View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_20 (Length: 432)
Name: NF14684_low_20
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_20 |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 714158 - 713744
Alignment:
| Q |
18 |
ataagattacaaacattctctttatttgccaatcacaatgctagagtgtgtgtagtattatgtctggcccatatttatgtaataaagctaaagtaaattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
714158 |
ataagattacaaacattctctttatttgccaatcacaatgctagagtgtgtgtagtattatgtctggcccatatttatgtaataaagctaaagtaaattt |
714059 |
T |
|
| Q |
118 |
tgttcacgacttcatgccttgtttaataagtttctgatcattcttatcaaggtttaattgtttttgcttttcagtataaatagtaagaaggaaagaaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
714058 |
tgttcacgacttcatgccttgtttaataagtttctgatcattcttatcaaggtttaattgtttttgcttttcagtataaatagtaagaaggaaagaaaaa |
713959 |
T |
|
| Q |
218 |
ccacctcattgatctatttatttaataagtttctgcatgcttttatgtacctttttggatttttggtgttgtaaatcatcaatcattcctaaatagaatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
713958 |
ccacctcattgatctatttatttaataagtttctgcatgcttttatgtacctttttggatttttggtgttgtaaatcatcaatcattcctaaatagcatg |
713859 |
T |
|
| Q |
318 |
caagcaccggtagaaattttgttggttttcttttttaaattggtgtttaaatagatttccattttatgttattgacccttaattttatgatgattctgca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
713858 |
caagcaccggtagaaattttgttggttttcttttttaaattggtgtttaaatagatttccattttatgttattgacccttaattttatgatgattctgca |
713759 |
T |
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| Q |
418 |
tgttaaactatattt |
432 |
Q |
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| T |
713758 |
tgttaaactatattt |
713744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 21368540 - 21368658
Alignment:
| Q |
309 |
aatagaatgcaagcaccggtagaaattttgttggttttcttttttaaattggtgtttaaatagatttccattttatgttattgacccttaattttatgat |
408 |
Q |
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||||| |||||||||| | |||||||| |||||||||||||||| |||| |||||||| || |||| ||||||||||||||||||||||||| ||||| |
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| T |
21368540 |
aatagcatgcaagcactgttagaaattctgttggttttcttttt-aaatgggtgtttagatggattgccattttatgttattgacccttaatcttatgtc |
21368638 |
T |
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| Q |
409 |
gattctgcatgttaaactat |
428 |
Q |
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|| |||| ||||||||||| |
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| T |
21368639 |
gagtctgggtgttaaactat |
21368658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 157 - 432
Target Start/End: Complemental strand, 3763868 - 3763589
Alignment:
| Q |
157 |
attcttatcaaggtttaattgtttttgcttttcagtataaatagtaagaaggaaagaaaaaccacctcattgatctatttatttaataagtttctgcatg |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3763868 |
attcttatcaaggtttaattgtttttgcttttcagtataaatagtaagaaggaaagaaaaaccacctcattgatctatttatttaataagtttctacatg |
3763769 |
T |
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| Q |
257 |
cttttatgtacctttttggatttttggtgttgtaaatcatcaatcattcctaaatagaatgcaagcaccggtagaaattttgttggttttcttttttaaa |
356 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3763768 |
cttttatgtacctttttggatttttggtgttgtaagtcatcaatcattcttaaatagcatgcaagcaccggtagaaattttgttagttttcttttttaaa |
3763669 |
T |
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| Q |
357 |
ttggtgtttaaatagatttccattttatgttattgacccttaattttat----gatgattctgcatgttaaactatattt |
432 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3763668 |
ttggtgtttaaatagatttccattttatgtttttgacccttaattttatgatggatgattctgcatgttaaactatattt |
3763589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 13065 - 13183
Alignment:
| Q |
309 |
aatagaatgcaagcaccggtagaaattttgttggttttcttttttaaattggtgtttaaatagatttccattttatgttattgacccttaattttatgat |
408 |
Q |
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||||| |||||||||| | |||||||| |||||||||||||||| |||| |||||||| || |||| ||||||||||||||||||||||||| ||||| |
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| T |
13065 |
aatagcatgcaagcactgttagaaattctgttggttttcttttt-aaatgggtgtttagatggattgccattttatgttattgacccttaatcttatgtc |
13163 |
T |
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| Q |
409 |
gattctgcatgttaaactat |
428 |
Q |
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|| |||| ||||||||||| |
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| T |
13164 |
gagtctgggtgttaaactat |
13183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 23900029 - 23899911
Alignment:
| Q |
309 |
aatagaatgcaagcaccggtagaaattttgttggttttcttttttaaattggtgtttaaatagatttccattttatgttattgacccttaattttatgat |
408 |
Q |
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||||| |||||||||| | |||||||| |||||||||||||||| |||| |||||||| || |||| ||||||||||||||||||||||||| ||||| |
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| T |
23900029 |
aatagcatgcaagcactgttagaaattctgttggttttcttttt-aaatgggtgtttagatggattgccattttatgttattgacccttaatcttatgtc |
23899931 |
T |
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| Q |
409 |
gattctgcatgttaaactat |
428 |
Q |
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|| |||| ||||||||||| |
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| T |
23899930 |
gagtctgggtgttaaactat |
23899911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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