View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_22 (Length: 395)
Name: NF14684_low_22
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_22 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 7 - 395
Target Start/End: Complemental strand, 28899896 - 28899508
Alignment:
| Q |
7 |
catatgataaccaccttgtcttttacagctggagcttgagcagaaagccagaagtctgcatgaagatatcacaaaacatgtatgtcgcatatcaatatta |
106 |
Q |
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| T |
28899896 |
catatgataaccaccttgtcttttacagctggagcttgagcagaaagccagaagtctgcatgaagatatcacaaaacatgtatgtcgcatatcaatatta |
28899797 |
T |
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| Q |
107 |
ctgtgttgtgtaatataatcccttttttctattgtaaagatagagctcaatataattcaaagggaaatatcgtggaatctagcatgtgaagatgggctat |
206 |
Q |
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| T |
28899796 |
ctgtgttgtgtaatataatcccttttttctattgtaaagatagagctcaatataattcaaagggaaatatcgtggaatctagcatgtgaagatgggctat |
28899697 |
T |
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| Q |
207 |
taatcatgaaattcaacaagagaaaaggctctcttactattttcaacttacaaaaaacttactatacatgcatagaatttacattcacataattgtgaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28899696 |
taatcatgaaattcaacaagagaaaaggctctcttactattttcaacttacaaaaaacttactatacatgcatagaatttacattcacataattgtgaaa |
28899597 |
T |
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| Q |
307 |
tttatttgagcatgtgccaggaggctgtaaatctataaatcaaactgaaaatttaaaatctgccctcatgttatcaattcgatagttca |
395 |
Q |
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| T |
28899596 |
tttatttgagcatgtgccaggaggctgtaaatctataaatcaaactgaaaatttaaaatctgccctcatgttatcaattcgatagttca |
28899508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 10 - 359
Target Start/End: Complemental strand, 28914252 - 28913902
Alignment:
| Q |
10 |
atgataaccacctt-gtcttttacagctggagcttgagcagaaagccagaagtctgcatgaagatatcacaaaacatgtatgtcgcatatcaatattact |
108 |
Q |
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| T |
28914252 |
atgataaccacctttgtgtttcacagctggagcttgagcagaaagccagaactctgcatgaagatatcacaaagcatgtatgtcacatatcaatattatt |
28914153 |
T |
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| Q |
109 |
gtgttgtgtaatataatcccttttttctattgtaaagatagagctcaatataattcaaagggaaatatcgtggaatctagcatgtgaagatgggctatta |
208 |
Q |
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| T |
28914152 |
ctgttgtgtaatataatccct-ttttctattgtaaagatagagctcaatataattcaaggtgaagtttcttgcaatctagcatgtgaacatgggctatga |
28914054 |
T |
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| Q |
209 |
atcatgaaattcaacaagagaaaaggctctcttacta-ttttcaacttacaaaaaacttactatacatgcatagaatttacattcacataattgtgaaat |
307 |
Q |
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| T |
28914053 |
atcatgaaatttaaaaacggcaaaaactctctttctagttcccaacgtagaaaaaaattattatacatgcatagaatttacattcacataattgtgatat |
28913954 |
T |
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| Q |
308 |
ttatttgagcatgtgccaggaggctgtaaatctataaatcaaactgaaaatt |
359 |
Q |
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| T |
28913953 |
ttacttgagaatgtgccaggaggcagtaaatctacaaaacaaactggaaatt |
28913902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 301
Target Start/End: Complemental strand, 28923656 - 28923366
Alignment:
| Q |
10 |
atgataaccacc-ttgtcttttacagctggagcttgagcagaaagccagaagtctgcatgaagatatcacaaaacatgtatgtcgcatatcaatattact |
108 |
Q |
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|||||||||||| |||| ||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| ||||| ||||| | | |
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| T |
28923656 |
atgataaccaccgttgtgtttcacagctggagcttgagaagaaagccagaactctgcatgaagatatcacaaagcatgtatgtcacatataaatatcatt |
28923557 |
T |
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| Q |
109 |
gtgttgtgtaatataatcccttttttctattgtaaagatagagctcaatataattcaaagggaaatatcgtggaatctagcatgtgaagatgggctatta |
208 |
Q |
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| T |
28923556 |
ctgttgtgtaatataatccct-ttttctattgtaaatatagagctcaatataattcaaagtgaagtttcttgcaatctagcatgtgaacatgggctatga |
28923458 |
T |
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| Q |
209 |
atcatgaaattcaacaagagaaaaggctctcttactattt-tcaacttacaaaaaacttactatacatgcatagaatttacattcacataattg |
301 |
Q |
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| T |
28923457 |
atcatgaaatttaaaaacggcaca--aactctttctatttcccaacgtacaaaaagatgattatacatgcatagaatttacattcacataattg |
28923366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 28932504 - 28932338
Alignment:
| Q |
22 |
ttgtcttttacagctggagcttgagcagaaagccagaagtctgcatgaagatatcacaaaacatgtatgtcgcatatcaatattactgtgttgtgtaata |
121 |
Q |
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|||| ||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||| |||||||||| ||||||| | |||||||||||| |
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| T |
28932504 |
ttgtgtttcacagctggagcttgagcagaaagctagaactctgcatgaagatattacaaagcatgtgtgtcgcatattaatattattctgttgtgtaata |
28932405 |
T |
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| Q |
122 |
taatcccttttttctattgtaaagatagagctcaatataattcaaagggaaatatcgtggaatctag |
188 |
Q |
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| T |
28932404 |
tactcccttttttctattttaaatatagagctcaatataattcaaagtgaaatttcttcgaatctag |
28932338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 28889729 - 28889661
Alignment:
| Q |
31 |
acagctggagcttgagcagaaagccagaagtctgcatgaagatatcacaaaacatgtatgtcgcatatc |
99 |
Q |
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| T |
28889729 |
acagatggagcttgagcagaaagccagaactctgcatgaagatatgataaagcatgtatgtcgtatatc |
28889661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 368
Target Start/End: Complemental strand, 28889654 - 28889584
Alignment:
| Q |
298 |
attgtgaaatttatttgagcatgtgccaggaggctgtaaatctataaatcaaactgaaaatttaaaatctg |
368 |
Q |
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| T |
28889654 |
attgtgaaatttacttaagtgcgtgtcaggaggcagtaaatctataaaacaaactgaaaatttaaaatctg |
28889584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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