View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14684_low_3 (Length: 612)
Name: NF14684_low_3
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 25)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 20 - 597
Target Start/End: Complemental strand, 17645710 - 17645133
Alignment:
| Q |
20 |
tcataggcaaagttgaactcgtagcattcagaaacactgaaggattagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttactaccatt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17645710 |
tcataggcaaagttgaactcgtagcattcagaaacactgaaggattagacacatttgtttgtgttgaaggaaaaccattcacaagttggttactaccatt |
17645611 |
T |
|
| Q |
120 |
tgtttgtgaagaatgaaaaccattaacaacttggttactaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17645610 |
tgtttgtgaagaatgaaaaccattaacaacttggttactaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttata |
17645511 |
T |
|
| Q |
220 |
ttgttgaatacttttggttgaggagggcatagttgaaactggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaag |
319 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17645510 |
ttgttgaatacttttggttgaggaggccatagttgaaactggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaag |
17645411 |
T |
|
| Q |
320 |
aaactggagactcaacaagattattttgtgagttgtaaacaatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttg |
419 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17645410 |
aaactggagactcaacaagattattctgtgaattgtaaacaagagaaggacgagtaataggttgcacatgatgtcctagcagcgcattgtatggagcttg |
17645311 |
T |
|
| Q |
420 |
tgaaggaggtactggagccggaaccttaaccgaaattggtatcctcacagtggacaatggtggaggccgaatcttctgcaaccttgtgacattttcctga |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17645310 |
tgaaggaggtactggagccggaaccttaaccgaaattggtatcctcacagtggacaatggtggaggccgaatcttctgcaaccttgtgacattttcctga |
17645211 |
T |
|
| Q |
520 |
tattttggtgaggaagggaaaccattcacaagttggttattggtgttaacattaaaagttggattggtagcatgaaaa |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17645210 |
tattttggtgaggaagggaaaccattcacaagttggttattggtgttaacattaaaagttggattggtagcatgaaaa |
17645133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 212 - 588
Target Start/End: Complemental strand, 17605437 - 17605061
Alignment:
| Q |
212 |
catttatattgttgaatacttttggttgaggagggcatagttgaaactggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcat |
311 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||||| | || | |||||||||||||||||||| | | ||||||| |||||| ||||||| ||||||||| |
|
|
| T |
17605437 |
catttatattgtttaatacttgtggttgaagagggtaaaggttaaactggttacctcttgaatcatcaaagttcattgttgggtcttgaacgtttctcat |
17605338 |
T |
|
| Q |
312 |
gaaagaagaaactggagactcaacaagattattttgtgagttgtaaacaatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtat |
411 |
Q |
| |
|
||||| ||| |||||| |||||||||||||||||| ||| ||||||||||||| ||| | ||||||||| ||||| ||||||||| || | ||||||| |
|
|
| T |
17605337 |
gaaagcagacactggaaactcaacaagattattttctgaattgtaaacaataggtggaaaattaataggttccacatgatgtcctagaagtgtattgtat |
17605238 |
T |
|
| Q |
412 |
ggagcttgtgaaggaggtactggagccggaaccttaaccgaaattggtatcctcacagtggacaatggtggaggccgaatcttctgcaaccttgtgacat |
511 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||| ||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17605237 |
ggagcttgtgaaggaggtactggttttgaaaccataaccggaatcggttgccttacaatggacaatggtggaggccgaatcttctgcaaccttgtaacca |
17605138 |
T |
|
| Q |
512 |
tttcctgatattttggtgaggaagggaaaccattcacaagttggttattggtgttaacattaaaagttggattggta |
588 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||| || |||||||| |
|
|
| T |
17605137 |
tttcctgagattttggtgtggaagagaaaccattcacaagttggttattgttgttaacatggaaaatttgattggta |
17605061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 116 - 597
Target Start/End: Original strand, 16480667 - 16481148
Alignment:
| Q |
116 |
catttgtttgtgaagaatgaaaaccattaacaacttggttactaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatt |
215 |
Q |
| |
|
|||||||||||| ||| |||||||||| || |||||||||||||||||| |||||| ||| |||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
16480667 |
catttgtttgtgttgaaggaaaaccattgacgacttggttactaccattcgaaggataataatattcctgagattggattattggctgatattgcgcatt |
16480766 |
T |
|
| Q |
216 |
tatattgttgaatacttttggttgaggagggcatagttgaaactggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaa |
315 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | |||||| |||||||||||||||| | | || |||| ||| || |||||| |||||||||||||| |
|
|
| T |
16480767 |
tatattgttgaatacttgtggttgaggagggcaaacttgaaattggttacctcttgaataatcaaatttcattgtagggtcttgagagtttctcatgaaa |
16480866 |
T |
|
| Q |
316 |
gaagaaactggagactcaacaagattattttgtgagttgtaaacaatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggag |
415 |
Q |
| |
|
| ||| | |||| |||| ||||||||||||||| ||||||||| ||| ||||| | |||||| |||||||| || ||||| | | ||||||||||| |
|
|
| T |
16480867 |
gcagacattggaaactcgacaagattattttgtatattgtaaacagtaggaggacaattaatagattgcacatgattccctagaattgtattgtatggag |
16480966 |
T |
|
| Q |
416 |
cttgtgaaggaggtactggagccggaaccttaaccgaaattggtatcctcacagtggacaatggtggaggccgaatcttctgcaaccttgtgacattttc |
515 |
Q |
| |
|
||||||| |||||| || | || |||| | |||| ||||||| ||| ||| ||||||||||||||||||| || || ||||||||||| || | ||| |
|
|
| T |
16480967 |
cttgtgagtgaggtattgctgtcgaaaccatgaccggaattggtggccttacaatggacaatggtggaggccgcatattttgcaaccttgtaacctcttc |
16481066 |
T |
|
| Q |
516 |
ctgatattttggtgaggaagggaaaccattcacaagttggttattggtgttaacattaaaagttggattggtagcatgaaaa |
597 |
Q |
| |
|
||| ||||| ||| | |||| |||||||||||||||||||||||| |||||||||| ||| || |||||||| ||| |||| |
|
|
| T |
16481067 |
ttgagattttcgtgtgtaaggaaaaccattcacaagttggttattgttgttaacattgaaattttgattggtaccattaaaa |
16481148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 136 - 588
Target Start/End: Complemental strand, 17632096 - 17631644
Alignment:
| Q |
136 |
aaaccattaacaacttggttactaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttg |
235 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||| |||| ||||||| ||||||||||||| || |
|
|
| T |
17632096 |
aaaccattcacaacttggttactaccattcagaggatcgtaatattcatgagattgaattattggctgatattgagcatttatgttgttgaatacttgtg |
17631997 |
T |
|
| Q |
236 |
gttgaggagggcatagttgaaactggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaac |
335 |
Q |
| |
|
|||||| |||| | ||||||||| ||||| ||||||||| | | ||||||| | |||| |||||||||||||||||||||| || | ||||||||||| |
|
|
| T |
17631996 |
gttgagcagggtaaagttgaaacgggttaactcttgaatcatcaaagttcattattgggtcttgaaagtttctcatgaaagctgacaatggagactcaat |
17631897 |
T |
|
| Q |
336 |
aagattattttgtgagttgtaaacaatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttgtgaaggaggtactgga |
435 |
Q |
| |
|
||||||||| ||||||| |||||| ||| ||||| | ||| || |||||||| || || ||| || | ||||| |||||||||||||||||||| ||| |
|
|
| T |
17631896 |
gagattatttggtgagttataaacattaggaggactattaacagattgcacatgatttcttagaagtgtattgtttggagcttgtgaaggaggtagtggt |
17631797 |
T |
|
| Q |
436 |
gccggaaccttaaccgaaattggtatcctcacagtggacaatggtggaggccgaatcttctgcaaccttgtgacattttcctgatattttggtgaggaag |
535 |
Q |
| |
|
| || |||| || | ||||| | ||| ||| |||||||||| |||||||||| ||| ||||||||||| | |||||| || | |||||| | ||| |
|
|
| T |
17631796 |
gtcgaaaccacgactggaattgatggccttacaatggacaatggcggaggccgaaccttttgcaaccttgtaagcttttcccgagactttggtatgtaag |
17631697 |
T |
|
| Q |
536 |
ggaaaccattcacaagttggttattggtgttaacattaaaagttggattggta |
588 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
17631696 |
ggaacccattcacaagttggttattgttgttaacattaaaagtttgattggta |
17631644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 59 - 385
Target Start/End: Original strand, 17663948 - 17664273
Alignment:
| Q |
59 |
aaggattagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttactaccatttgtttgtgaagaatgaaaaccattaacaacttggttact |
158 |
Q |
| |
|
||||||||||||| ||| ||||||| |||| |||||| |||||||||||||| | ||||||||||||| | ||| |||||||| |||| ||||||||| |
|
|
| T |
17663948 |
aaggattagacacgttttcttgtgttaaagggaaaccattcacaagttggttattgtcatttgtttgtgaggtatggaaaccattcacaagttggttact |
17664047 |
T |
|
| Q |
159 |
accattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggagggcatagttgaaac |
258 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||||||||| || ||| |||| || |||||||||||||| ||||||| ||||| | ||||||| |
|
|
| T |
17664048 |
accattcataggataatgatgttcctggtatggaattattggctaatattggacatctaaattgttgaatacttgtggttgatgagggtaggtttgaaac |
17664147 |
T |
|
| Q |
259 |
tggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaaa |
358 |
Q |
| |
|
|||||||||||||||||| || |||| ||| ||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
17664148 |
tggttacctcttgaatta-tcatattcatcattgaatcttgaaattttctcatgaaagcagaaattggagactcaaaaagattattttctgaattgtaaa |
17664246 |
T |
|
| Q |
359 |
caatagaaggacgagtaataggttgca |
385 |
Q |
| |
|
||| || | ||| || ||||||||||| |
|
|
| T |
17664247 |
caaaaggatgaccagaaataggttgca |
17664273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 40 - 383
Target Start/End: Complemental strand, 17650130 - 17649787
Alignment:
| Q |
40 |
gtagcattcagaaacactgaaggattagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttactaccatttgtttgtgaagaatgaaaac |
139 |
Q |
| |
|
|||||| || || ||| ||||||||||||||| ||| |||||||||||| |||||| |||||| ||||||| | ||||||||||||| | ||| |||| |
|
|
| T |
17650130 |
gtagcaatcggagacattgaaggattagacacgttttcttgtgttgaagggaaaccattcacaacttggttattgtcatttgtttgtgaggcatggaaac |
17650031 |
T |
|
| Q |
140 |
cattaacaacttggttactaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttg |
239 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||| || | |||||||| |||| ||| |||| || |||||||| ||||| |||||| |
|
|
| T |
17650030 |
cattcacaagttggttactaccattcataggataatgatgttcctggtatgggattattggttgatattggacatctaaattgttgactacttgtggttg |
17649931 |
T |
|
| Q |
240 |
aggagggcatagttgaaactggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaaga |
339 |
Q |
| |
|
| ||||| | ||||||||||| ||||||||||||| | | |||| ||| ||||||||| ||||||||||||| ||||| |||||| || |||||| |
|
|
| T |
17649930 |
atgagggaaaggttgaaactggctacctcttgaattgtcatatttcatcattgaatcttgaaattttctcatgaaagcagaaattggagattcgacaaga |
17649831 |
T |
|
| Q |
340 |
ttattttgtgagttgtaaacaatagaaggacgagtaataggttg |
383 |
Q |
| |
|
||||||| ||| |||||||||| || ||||| |||||| ||||| |
|
|
| T |
17649830 |
ttattttctgaattgtaaacaaaaggaggaccagtaattggttg |
17649787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 150 - 506
Target Start/End: Original strand, 20751374 - 20751730
Alignment:
| Q |
150 |
ttggttactaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggagggcat |
249 |
Q |
| |
|
||||| |||||||||||||||||| ||| ||| |||||||| |||||||||||| ||||||||||||||||||||||| || ||||||| ||||| | |
|
|
| T |
20751374 |
ttggtcactaccattcataggataataatattcttgagattgggttattggctgatattgaacatttatattgttgaataattgtggttgatgagggtaa |
20751473 |
T |
|
| Q |
250 |
agttgaaactggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtg |
349 |
Q |
| |
|
||||||| ||||||||| ||||||| | ||| ||| ||| |||||||||||||||||||||| ||||| || |||||| |||||||||||||| |
|
|
| T |
20751474 |
ggttgaaaatggttaccttctgaattatcaaagctcatatttgactcttgaaagtttctcatgaaagcagaaattgaagactcgtcaagattattttgta |
20751573 |
T |
|
| Q |
350 |
agttgtaaacaatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttgtgaaggaggtactggagccggaaccttaac |
449 |
Q |
| |
|
| |||| ||| | || ||||| ||||| || ||||||| ||||||||| | | || |||||||| ||||||||||| |||| ||||||||| ||| |
|
|
| T |
20751574 |
aattgttaactagaggaggaccagtaaaagactgcacatgatgtcctagaaatgtgttatatggagcagttgaaggaggtaatggatccggaacctgaac |
20751673 |
T |
|
| Q |
450 |
cgaaattggtatcctcacagtggacaatggtggaggccgaatcttctgcaaccttgt |
506 |
Q |
| |
|
||||||||| ||||||| ||||||| |||||||| ||| | |||||||||||||| |
|
|
| T |
20751674 |
tgaaattggtggcctcacaatggacaaaggtggaggtcgatttttctgcaaccttgt |
20751730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 58 - 360
Target Start/End: Original strand, 17676238 - 17676540
Alignment:
| Q |
58 |
gaaggattagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttactaccatttgtttgtgaagaatgaaaaccattaacaacttggttac |
157 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| |||||| |||||| ||||||| | |||||||||| || | ||| |||| ||| |||| |||||||| |
|
|
| T |
17676238 |
gaaggattaggcacattttcatgtgttgaagggaaaccattcacaacttggttattgtcatttgtttgggaggcatggaaactattcacaagttggttac |
17676337 |
T |
|
| Q |
158 |
taccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggagggcatagttgaaa |
257 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||||||| |||| ||| |||| || |||||||| ||||| ||||||| ||||| | ||||||| |
|
|
| T |
17676338 |
taccattcataggataatgatgttcctggtatggaattattggttgatattggacatctaaattgttgactacttgtggttgatgagggaaaggttgaaa |
17676437 |
T |
|
| Q |
258 |
ctggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaa |
357 |
Q |
| |
|
|||||||||||||||||| | |||||| ||| ||||||||| | ||||||||||| ||||| ||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
17676438 |
ctggttacctcttgaattgtcatagttcatcattgaatcttgaaattctctcatgaaagcagaaattggagactcgacaagattattttctgaattgtaa |
17676537 |
T |
|
| Q |
358 |
aca |
360 |
Q |
| |
|
||| |
|
|
| T |
17676538 |
aca |
17676540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 57 - 451
Target Start/End: Original strand, 16481154 - 16481551
Alignment:
| Q |
57 |
tgaaggattagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttactaccatttgtttgtgaagaatgaaaaccattaacaacttggtta |
156 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||||| ||| |||||||||| || ||||||||||||| ||||| |||| ||| |||| ||||||| |
|
|
| T |
16481154 |
tgaaggattagccatatttgtttgtattgaaggaaaaccattcagaagttggttattagcatttgtttgtgaggaatggaaacaattcacaatttggtta |
16481253 |
T |
|
| Q |
157 |
ctaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggagggcatagttgaa |
256 |
Q |
| |
|
|||||||| || ||||| ||||||| || |||| |||||||||||||| |||||||||||| |||||||| |||| || |||| |||| | |||||| |
|
|
| T |
16481254 |
ctaccattaattggataataatgttcatgggatttaattattggctgatattgaacatttatgttgttgaagacttgtgattgatgaggataaggttgaa |
16481353 |
T |
|
| Q |
257 |
actggttacctcttgaattacccaagttcaatgttgga-----tcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgag |
351 |
Q |
| |
|
|||| ||||||| ||||||||| | |||| ||| ||| |||||| |||||||||| ||||||| | |||| ||| |||||||||| | || || |
|
|
| T |
16481354 |
actgattacctcctgaattaccaatgttcgatg--ggagtatgtcttgagagtttctcatcgaagaagatattggaaacttaacaagattactatgcgaa |
16481451 |
T |
|
| Q |
352 |
ttgtaaacaatagaagg--acgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttgtgaaggaggtactggagccggaaccttaac |
449 |
Q |
| |
|
|||| |||| |||||| || || ||||| |||||| |||| || | || ||||||||| | ||||||||||||||| |||||||| ||||| ||| |
|
|
| T |
16481452 |
ttgtcaaca--agaaggttaccggtgataggctgcacaagatgtgctggaagtgcattgtatagcgcttgtgaaggaggtcttggagccgaaacctgaac |
16481549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 63 - 438
Target Start/End: Complemental strand, 17605040 - 17604662
Alignment:
| Q |
63 |
attagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttactaccatttgtttgtgaagaatgaaaaccattaacaacttggttactacca |
162 |
Q |
| |
|
||||| || |||||||||||||||||| |||||| ||| || ||||||| || ||||||||||| | ||||||||| |||| |||| ||||||||||||| |
|
|
| T |
17605040 |
attagccatatttgtttgtgttgaagggaaaccattcagaatttggttattagcatttgtttgtaaggaatgaaaatcattcacaaattggttactacca |
17604941 |
T |
|
| Q |
163 |
ttcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggagggcatagttgaaactggt |
262 |
Q |
| |
|
|| ||||||| ||||||| ||||||| ||||||||| |||| ||||| ||||||||||||||| |||| || |||| ||||| | | |||||||| | |
|
|
| T |
17604940 |
ttagtaggataataatgttcttgagatttaattattggatgatattgaaaatttatattgttgaagacttgtgattgatgagggtaaggctgaaactgat |
17604841 |
T |
|
| Q |
263 |
tacctcttgaattacccaagttcaatg---ttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaaac |
359 |
Q |
| |
|
|||||| ||||||||| | ||||| | | | |||||| |||||||||| |||||||| | |||| ||||||||| |||| ||||||| || | ||| |
|
|
| T |
17604840 |
tacctcctgaattaccaatgttcagcggaaataggtcttgagagtttctcatcaaagaagatattggaaactcaacaatattactttgtgaattttcaac |
17604741 |
T |
|
| Q |
360 |
aatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttgtgaaggaggtactggagcc |
438 |
Q |
| |
|
|| | | || |||||||| |||| | || | || | || ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
17604740 |
aagatgattaccggtaataggctgcataggatatactggaagtgcattgtatagagcctgtgaaggaggtactggagcc |
17604662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 57 - 394
Target Start/End: Complemental strand, 17645127 - 17644787
Alignment:
| Q |
57 |
tgaaggattagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttactaccatttgtttgtgaagaatgaaaaccattaacaacttggtta |
156 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| || || |||||||||||||||| |||||||||||| ||||||| |||||| |||| |||| || |
|
|
| T |
17645127 |
tgaaagattggacacatttgtttgtgttgaagggaagcctttcacaagttggttactgtaatttgtttgtgaggaatgaataccattcacaagttggcta |
17645028 |
T |
|
| Q |
157 |
ctaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggagggcatagttgaa |
256 |
Q |
| |
|
||| ||| |||||||| |||||| |||||||||| |||||| |||| |||||||||| ||||||| || ||| || |||||||||| | |||| | |
|
|
| T |
17645027 |
ctatgattgataggataataatgtttttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtgattgaggagggtaaggttgga |
17644928 |
T |
|
| Q |
257 |
actggttacctcttgaattacccaagttca---atgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagtt |
353 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||| |||||||||||||||||| ||| ||| |||||| || || ||||||| ||||||| || |
|
|
| T |
17644927 |
actggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagatactggaaacccagaaagattactttgtgaatt |
17644828 |
T |
|
| Q |
354 |
gtaaacaatagaaggacgagtaataggttgcacataatgtc |
394 |
Q |
| |
|
|| ||||| ||||| || |||||| ||||||| ||||| |
|
|
| T |
17644827 |
gttaacaaggagaggaccagaaataggatgcacatgatgtc |
17644787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 150 - 506
Target Start/End: Original strand, 17950001 - 17950357
Alignment:
| Q |
150 |
ttggttactaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggagggcat |
249 |
Q |
| |
|
||||| ||| |||||||||||||| ||| ||| |||||||| ||||||| | || ||| ||||||||||||||||||| || ||||||| ||||| | |
|
|
| T |
17950001 |
ttggtcactgccattcataggataataatattcttgagattgggttattggattatattggacatttatattgttgaataattgtggttgatgagggtaa |
17950100 |
T |
|
| Q |
250 |
agttgaaactggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtg |
349 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||| ||| |||||||||||||||||||||| ||||| ||||||||| |||||||||| |||| |
|
|
| T |
17950101 |
ggttgaaaagggttaccttatgaattaccaaagttcatatttgactcttgaaagtttctcatgaaagcagaaattggagactcgtcaagattattctgtg |
17950200 |
T |
|
| Q |
350 |
agttgtaaacaatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttgtgaaggaggtactggagccggaaccttaac |
449 |
Q |
| |
|
| |||| ||| | || ||||| ||||| | ||||||| ||||||| | | || || |||||||| |||||||| | || || | ||||| ||| ||| |
|
|
| T |
17950201 |
aattgttaactagaggaggactagtaacatactgcacatgatgtcctggaaatgcgttatatggagcctgtgaaggcgataatgcatccggagcctgaac |
17950300 |
T |
|
| Q |
450 |
cgaaattggtatcctcacagtggacaatggtggaggccgaatcttctgcaaccttgt |
506 |
Q |
| |
|
||| ||| ||||||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
17950301 |
taaaaccggtggcctcacaatggacaatggtggaggtcgattcttctgcaaccttgt |
17950357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 150 - 506
Target Start/End: Original strand, 17953853 - 17954209
Alignment:
| Q |
150 |
ttggttactaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggagggcat |
249 |
Q |
| |
|
||||| ||| |||||||||||||| ||| ||| |||||||| ||||||| | || ||| ||||||||||||||||||| || ||||||| ||||| | |
|
|
| T |
17953853 |
ttggtcactgccattcataggataataatattcttgagattgggttattggattatattggacatttatattgttgaataattgtggttgatgagggtaa |
17953952 |
T |
|
| Q |
250 |
agttgaaactggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtg |
349 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||| ||| |||||||||||||||||||||| ||||| ||||||||| |||||||||| |||| |
|
|
| T |
17953953 |
ggttgaaaagggttaccttatgaattaccaaagttcatatttgactcttgaaagtttctcatgaaagcagaaattggagactcgtcaagattattctgtg |
17954052 |
T |
|
| Q |
350 |
agttgtaaacaatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttgtgaaggaggtactggagccggaaccttaac |
449 |
Q |
| |
|
| |||| ||| | || ||||| ||||| | ||||||| ||||||| | | || || |||||||| |||||||| | || || | ||||| ||| ||| |
|
|
| T |
17954053 |
aattgttaactagaggaggactagtaacatactgcacatgatgtcctggaaatgcgttatatggagcctgtgaaggcgataatgcatccggagcctgaac |
17954152 |
T |
|
| Q |
450 |
cgaaattggtatcctcacagtggacaatggtggaggccgaatcttctgcaaccttgt |
506 |
Q |
| |
|
||| ||| ||||||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
17954153 |
taaaaccggtggcctcacaatggacaatggtggaggtcgattcttctgcaaccttgt |
17954209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 57 - 278
Target Start/End: Complemental strand, 17631629 - 17631408
Alignment:
| Q |
57 |
tgaaggattagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttactaccatttgtttgtgaagaatgaaaaccattaacaacttggtta |
156 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| |||||| | | ||||||| || || ||||||||||||| |||| ||||||| |||| |||||| |
|
|
| T |
17631629 |
tgaaggattagccacatttgtttgtaatgaagggaaaccattgagaagttgggtattagcatttgtttgtgaggaattggaaccattcacaaattggttg |
17631530 |
T |
|
| Q |
157 |
ctaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggagggcatagttgaa |
256 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||| ||||||||| | || ||||||||||||||||||||| |||| || |||| |||| | ||||| |
|
|
| T |
17631529 |
ctaccattaataggataataatgttcttgagatgtaattattggattatattgaacatttatattgttgaagacttgtgattgattagggtaagattgaa |
17631430 |
T |
|
| Q |
257 |
actggttacctcttgaattacc |
278 |
Q |
| |
|
|||| ||||||| ||||||||| |
|
|
| T |
17631429 |
actgattacctcctgaattacc |
17631408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 150 - 394
Target Start/End: Complemental strand, 18766710 - 18766466
Alignment:
| Q |
150 |
ttggttactaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggagggcat |
249 |
Q |
| |
|
||||| ||||||||||||| |||| ||| ||| |||||||| |||||||||||| ||| ||||||||||||||||||| || ||||||| ||||| | |
|
|
| T |
18766710 |
ttggtcactaccattcataagataataatattcttgagattgggttattggctgatattggacatttatattgttgaataattgtggttgatgagggtaa |
18766611 |
T |
|
| Q |
250 |
agttgaaactggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtg |
349 |
Q |
| |
|
||||||| ||||||| ||||||||| ||||||| ||| ||||||||||||||||| |||| ||||| || ||||||| |||||||||| || |
|
|
| T |
18766610 |
ggttgaaaaatgttaccttctgaattaccaaagttcatatttgactcttgaaagtttctcataaaagcagaaattgaagactcatagagattattttatg |
18766511 |
T |
|
| Q |
350 |
agttgtaaacaatagaaggacgagtaataggttgcacataatgtc |
394 |
Q |
| |
|
| |||| ||| | || ||||| ||||| || ||||||| ||||| |
|
|
| T |
18766510 |
aattgttaactagaggaggaccagtaacagactgcacatgatgtc |
18766466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 17605558 - 17605450
Alignment:
| Q |
40 |
gtagcattcagaaacactgaaggattagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttactaccatttgtttgtgaagaatgaaaac |
139 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||| ||||||||| ||| | ||||||||||||||||||| |||| |
|
|
| T |
17605558 |
gtagcattcagagatactgaaggattagacacatttgtttgtgtcgaagggaaaccattcacaagttcattaatgacatttgtttgtgaagaatggaaac |
17605459 |
T |
|
| Q |
140 |
cattaacaa |
148 |
Q |
| |
|
|||| |||| |
|
|
| T |
17605458 |
cattcacaa |
17605450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 85 - 337
Target Start/End: Complemental strand, 29883565 - 29883313
Alignment:
| Q |
85 |
gaaggaaaaccaatcacaagttggttactaccatttgtttgtgaagaatgaaaaccattaacaacttggttactaccattcataggatacaaatgttcct |
184 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||| |||| || || | |||||||| |||| ||| ||||||||||||||||||| | ||| | |
|
|
| T |
29883565 |
gaaggaaaaccgttcacatgttggttaataccatttatttgcgataaaaggaaaccattcacaagctggctactaccattcataggataatattgtggtt |
29883466 |
T |
|
| Q |
185 |
gagattgaattattggctgatgttgaacatttatattgttgaatacttttggttgaggagggcatagttgaaactggttacctcttgaattacccaagtt |
284 |
Q |
| |
|
| |||||||||||| ||| ||||||||| | |||||| ||||||| || ||||| |||| | ||||||||||||||||||||||| || | ||||| |
|
|
| T |
29883465 |
gggattgaattattaattgagattgaacattcacattgttcaatacttgtgattgagtagggtaaggttgaaactggttacctcttgaactatcaaagtt |
29883366 |
T |
|
| Q |
285 |
caatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaa |
337 |
Q |
| |
|
|| ||| | |||||| ||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
29883365 |
catcattgagttttgaaaatttctcatgaaagcagaaattggagattcaacaa |
29883313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 16480616 - 16480715
Alignment:
| Q |
20 |
tcataggcaaagttgaactcgtagcattcagaaacactgaaggattagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttactaccatt |
119 |
Q |
| |
|
||||||||||||||| | | |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | || | ||||||||||||||| |
|
|
| T |
16480616 |
tcataggcaaagttggattggtagcattcagagtcactgaagaattagacacatttgtttgtgttgaaggaaaaccattgacgacttggttactaccatt |
16480715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 17632147 - 17632068
Alignment:
| Q |
40 |
gtagcattcagaaacactgaaggattagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttactaccatt |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||| ||||||||||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
17632147 |
gtagcattcagagacactgaaggattagacatatttatttgtgttgaagggaaaccattcacaacttggttactaccatt |
17632068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 16480517 - 16480610
Alignment:
| Q |
20 |
tcataggcaaagttgaactcgtagcattcagaaacactgaaggattagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttact |
113 |
Q |
| |
|
||||||||||||||| | | |||||||||||| ||| |||| |||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
16480517 |
tcataggcaaagttggattggtagcattcagagtcaccgaagaattagacacatttgtttgtgaggaagaaaaaccaatcacaggttggttact |
16480610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 219 - 336
Target Start/End: Original strand, 29880324 - 29880441
Alignment:
| Q |
219 |
attgttgaatacttttggttgaggagggcatagttgaaactggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaa |
318 |
Q |
| |
|
|||||| ||||||| || |||||||||| | ||||| |||||||||||||||||| | ||||||| |||| | |||||| ||||||||||||| | |
|
|
| T |
29880324 |
attgttcaatacttgtgattgaggagggtaagactgaaattggttacctcttgaattatcaaagttcatcgttgagttttgaaaatttctcatgaaagca |
29880423 |
T |
|
| Q |
319 |
gaaactggagactcaaca |
336 |
Q |
| |
|
|| ||| |||| |||||| |
|
|
| T |
29880424 |
gacactagagattcaaca |
29880441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 561
Target Start/End: Complemental strand, 18766839 - 18766800
Alignment:
| Q |
522 |
ttttggtgaggaagggaaaccattcacaagttggttattg |
561 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18766839 |
tttttgtgaggaagggaaaccattcaaaagttggttattg |
18766800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 528
Target Start/End: Original strand, 17676643 - 17676708
Alignment:
| Q |
463 |
ctcacagtggacaatggtggaggccgaatcttctgcaaccttgtgacattttcctgatattttggt |
528 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||||| |||||||| || || ||||| |||||||| |
|
|
| T |
17676643 |
ctcacaatggacaatggtggaggtcgattcttctgtaaccttgtaaccttagcctgagattttggt |
17676708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 506
Target Start/End: Complemental strand, 17649708 - 17649664
Alignment:
| Q |
462 |
cctcacagtggacaatggtggaggccgaatcttctgcaaccttgt |
506 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
17649708 |
cctcacaatggacaatggtggaggtcgattcttctgtaaccttgt |
17649664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 561
Target Start/End: Original strand, 17663975 - 17664003
Alignment:
| Q |
533 |
aagggaaaccattcacaagttggttattg |
561 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17663975 |
aagggaaaccattcacaagttggttattg |
17664003 |
T |
|
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Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 32670122 - 32670006
Alignment:
| Q |
40 |
gtagcattcagaaacactgaaggattagacacatttgtttgtgttgaaggaaaaccaatcacaagttggttactaccatttgtttgtgaagaatgaaaac |
139 |
Q |
| |
|
|||||||||||| |||||||||||||||||| || |||||||| || || ||||||| | |||||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
32670122 |
gtagcattcagagacactgaaggattagacagatatgtttgtgatggagcaaaaccattgacaagttggttactaccatttgcttgtgatgtgtgaaaac |
32670023 |
T |
|
| Q |
140 |
cattaacaacttggtta |
156 |
Q |
| |
|
||| |||| ||||||| |
|
|
| T |
32670022 |
aattcacaagttggtta |
32670006 |
T |
|
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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 32669717 - 32669674
Alignment:
| Q |
463 |
ctcacagtggacaatggtggaggccgaatcttctgcaaccttgt |
506 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32669717 |
ctcacaatggacaatggtggaggccgattcttctgcaaccttgt |
32669674 |
T |
|
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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 32669883 - 32669827
Alignment:
| Q |
294 |
atcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtga |
350 |
Q |
| |
|
||||||||| | ||||||||||| ||||| |||||| ||||||||||| |||||||| |
|
|
| T |
32669883 |
atcttgaaaatctctcatgaaagcagaaattggagattcaacaagattgttttgtga |
32669827 |
T |
|
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