View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14684_low_34 (Length: 336)

Name: NF14684_low_34
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14684_low_34
NF14684_low_34
[»] chr8 (4 HSPs)
chr8 (105-329)||(44806114-44806338)
chr8 (276-312)||(10987796-10987832)
chr8 (282-310)||(37051627-37051655)
chr8 (282-310)||(44617697-44617725)
[»] chr2 (9 HSPs)
chr2 (131-254)||(28136364-28136487)
chr2 (249-310)||(18103725-18103786)
chr2 (246-310)||(44460328-44460392)
chr2 (247-319)||(28804334-28804406)
chr2 (248-310)||(35199579-35199641)
chr2 (281-319)||(36300414-36300452)
chr2 (284-317)||(27309628-27309661)
chr2 (281-318)||(33623666-33623703)
chr2 (282-319)||(42616732-42616769)
[»] chr3 (3 HSPs)
chr3 (248-312)||(51616390-51616454)
chr3 (284-318)||(38692427-38692461)
chr3 (273-309)||(2990983-2991019)
[»] chr7 (4 HSPs)
chr7 (275-317)||(7245942-7245984)
chr7 (281-315)||(18679425-18679459)
chr7 (281-319)||(26850731-26850769)
chr7 (249-310)||(1110408-1110469)
[»] chr5 (8 HSPs)
chr5 (249-310)||(41015003-41015064)
chr5 (240-318)||(631483-631561)
chr5 (274-312)||(11257753-11257791)
chr5 (249-310)||(27731593-27731654)
chr5 (283-312)||(40433628-40433657)
chr5 (248-312)||(7430117-7430181)
chr5 (281-309)||(17755234-17755262)
chr5 (247-311)||(18551487-18551551)
[»] chr6 (7 HSPs)
chr6 (278-309)||(264584-264615)
chr6 (281-311)||(9053920-9053950)
chr6 (276-318)||(26373110-26373152)
chr6 (249-310)||(2732936-2732997)
chr6 (281-310)||(14399846-14399875)
chr6 (276-312)||(770369-770405)
chr6 (273-309)||(34881737-34881773)
[»] chr4 (9 HSPs)
chr4 (276-319)||(34581606-34581649)
chr4 (242-308)||(27722414-27722480)
chr4 (281-310)||(34417365-34417394)
chr4 (284-312)||(4148443-4148471)
chr4 (282-318)||(20989525-20989561)
chr4 (277-309)||(33792195-33792227)
chr4 (282-310)||(34417855-34417883)
chr4 (275-311)||(37579589-37579625)
chr4 (247-319)||(46714280-46714352)
[»] scaffold0245 (1 HSPs)
scaffold0245 (263-320)||(23133-23190)
[»] chr1 (3 HSPs)
chr1 (263-320)||(1295223-1295280)
chr1 (247-308)||(24808347-24808408)
chr1 (282-318)||(32721454-32721490)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 105 - 329
Target Start/End: Original strand, 44806114 - 44806338
Alignment:
Q  105 aattagtttttcaattatagcaatacttttttgtagtcaaattctacttgcaagagtttattttcaatcgtctaggtttagtgacaaaattcaataattc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44806114 aattagtttttcaattatagcaatacttttttgtagtcaaattctacttgcaagagtttattttcaatcgtctaggtttagtgacaaaattcaacaattc 44806213  T
Q  205 agtcttgaacagtgttgacgaatagcggcgccatcgtgtagtagaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44806214 agtcttgaacagtgttgacgaatagcggcgccatcgtgtagtagaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtca 44806313  T
Q  305 aatagcggatatagttagagtatta 329  Q
    |||||||||||||||||||||||||    
T  44806314 aatagcggatatagttagagtatta 44806338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 10987796 - 10987832
Alignment:
Q  276 gataggctatttagtacaaagtgttgtcaaatagcgg 312  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  10987796 gatatgctatttagtacaaagttttgtcaaatagcgg 10987832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 37051627 - 37051655
Alignment:
Q  282 ctatttagtacaaagtgttgtcaaatagc 310  Q
    |||||||||||||||||||||||||||||    
T  37051627 ctatttagtacaaagtgttgtcaaatagc 37051655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 44617697 - 44617725
Alignment:
Q  282 ctatttagtacaaagtgttgtcaaatagc 310  Q
    |||||||||||||||||||||||||||||    
T  44617697 ctatttagtacaaagtgttgtcaaatagc 44617725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 28136487 - 28136364
Alignment:
Q  131 ttttttgtagtcaaattctacttgcaagagtttattttcaatcgtctaggtttagtgacaaaattcaataattcagtcttgaacagtgttgacgaatagc 230  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  28136487 ttttttgtagtcaaattatatttgcaagagtttattttcaatcgtctaggttcagtgacaaaattcaacaattcagtcttgaatagtgttgacgaatagc 28136388  T
Q  231 ggcgccatcgtgtagtagaatttg 254  Q
      | |||| |||||||||||||||    
T  28136387 accaccattgtgtagtagaatttg 28136364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 18103725 - 18103786
Alignment:
Q  249 aatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagc 310  Q
    |||||||||||| ||||||| |||||| |||  |||||| ||||||||||||||||||||||    
T  18103725 aatttgaacaaattgctactgtttcacaatacactatttggtacaaagtgttgtcaaatagc 18103786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 44460328 - 44460392
Alignment:
Q  246 tagaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagc 310  Q
    ||||||||||||||| ||||||| || || ||||  |||||||||||||| ||||||||||||||    
T  44460328 tagaatttgaacaaaatgctactgttccatgatacactatttagtacaaaatgttgtcaaatagc 44460392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 28804334 - 28804406
Alignment:
Q  247 agaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagcggatatagt 319  Q
    ||||||||||||||  |||| | |||||  ||| ||||||||||||||||| |||||||||| ||| ||||||    
T  28804334 agaatttgaacaaatcgctattgtttcagaataagctatttagtacaaagtattgtcaaataacggctatagt 28804406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 35199579 - 35199641
Alignment:
Q  248 gaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagc 310  Q
    |||||| | |||| ||||| | |||||||||| || ||||||| |||||||||||||||||||    
T  35199579 gaattttagcaaattgctattgtttcacgatacgcgatttagttcaaagtgttgtcaaatagc 35199641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 36300414 - 36300452
Alignment:
Q  281 gctatttagtacaaagtgttgtcaaatagcggatatagt 319  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  36300414 gctatttagtacaaaatgttgtcaaatagtggatatagt 36300452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 27309628 - 27309661
Alignment:
Q  284 atttagtacaaagtgttgtcaaatagcggatata 317  Q
    |||||||| |||||||||||||||||||||||||    
T  27309628 atttagtataaagtgttgtcaaatagcggatata 27309661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 33623703 - 33623666
Alignment:
Q  281 gctatttagtacaaagtgttgtcaaatagcggatatag 318  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  33623703 gctatttagtacaaagtgttgtcatatagaggatatag 33623666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 42616769 - 42616732
Alignment:
Q  282 ctatttagtacaaagtgttgtcaaatagcggatatagt 319  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  42616769 ctatttagtacaaagtgttgtcaaatagcagttatagt 42616732  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 51616454 - 51616390
Alignment:
Q  248 gaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagcgg 312  Q
    |||||||||||||||| || | || ||||||| |||||||| |||| ||||||||||||||||||    
T  51616454 gaatttgaacaaactggtattgttccacgatacgctatttaatacagagtgttgtcaaatagcgg 51616390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 38692461 - 38692427
Alignment:
Q  284 atttagtacaaagtgttgtcaaatagcggatatag 318  Q
    ||||||||||||||||||||||||||||| |||||    
T  38692461 atttagtacaaagtgttgtcaaatagcggctatag 38692427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 2991019 - 2990983
Alignment:
Q  273 cacgataggctatttagtacaaagtgttgtcaaatag 309  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  2991019 cacgatacgctatttagtacaaaatgttgtcaaatag 2990983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 7245984 - 7245942
Alignment:
Q  275 cgataggctatttagtacaaagtgttgtcaaatagcggatata 317  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  7245984 cgatacgctatttagtacaaagtgttgtcaaatagcggctata 7245942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 18679425 - 18679459
Alignment:
Q  281 gctatttagtacaaagtgttgtcaaatagcggata 315  Q
    ||||||||||| |||||||||||||||||||||||    
T  18679425 gctatttagtataaagtgttgtcaaatagcggata 18679459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 26850769 - 26850731
Alignment:
Q  281 gctatttagtacaaagtgttgtcaaatagcggatatagt 319  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  26850769 gctatttagtacaaagtgtagtcaaatagcggctatagt 26850731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 1110469 - 1110408
Alignment:
Q  249 aatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagc 310  Q
    |||||||||||| ||||| | ||||  |||| |||||||||| | |||||||||||||||||    
T  1110469 aatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaatagc 1110408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 41015064 - 41015003
Alignment:
Q  249 aatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagc 310  Q
    |||||||||||||||||| | || |  |||| |||||||||||||||||||||||| |||||    
T  41015064 aatttgaacaaactgctattgttccgtgatatgctatttagtacaaagtgttgtcatatagc 41015003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 631561 - 631483
Alignment:
Q  240 gtgtagtagaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagcggatatag 318  Q
    |||||| ||||||| ||| ||| | | ||||||| ||||| ||||||||||||||| | |||||| ||||||| |||||    
T  631561 gtgtagcagaatttcaacgaaccgttgctatttcgcgatacgctatttagtacaaaatattgtcatatagcggctatag 631483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 11257753 - 11257791
Alignment:
Q  274 acgataggctatttagtacaaagtgttgtcaaatagcgg 312  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  11257753 acgatatgctatttagtacaaaatgttgtcaaatagcgg 11257791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 27731654 - 27731593
Alignment:
Q  249 aatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagc 310  Q
    ||||| ||||||| |||| | |||  ||||| ||||||||||||||||| ||||||||||||    
T  27731654 aatttaaacaaaccgctattgtttaccgatatgctatttagtacaaagttttgtcaaatagc 27731593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 312
Target Start/End: Original strand, 40433628 - 40433657
Alignment:
Q  283 tatttagtacaaagtgttgtcaaatagcgg 312  Q
    ||||||||||||||||||||||||||||||    
T  40433628 tatttagtacaaagtgttgtcaaatagcgg 40433657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 7430117 - 7430181
Alignment:
Q  248 gaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagcgg 312  Q
    ||||||| |||||| |||| | || ||| ||| ||||||||||||||  ||||||||||||||||    
T  7430117 gaatttggacaaaccgctattgttccacaatacgctatttagtacaagatgttgtcaaatagcgg 7430181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 309
Target Start/End: Complemental strand, 17755262 - 17755234
Alignment:
Q  281 gctatttagtacaaagtgttgtcaaatag 309  Q
    |||||||||||||||||||||||||||||    
T  17755262 gctatttagtacaaagtgttgtcaaatag 17755234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 18551551 - 18551487
Alignment:
Q  247 agaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagcg 311  Q
    ||||||| ||||||| |||| | ||||  |||| || ||||||||||||||||||||| ||||||    
T  18551551 agaattttaacaaacagctattgtttcgagatatgcaatttagtacaaagtgttgtcatatagcg 18551487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 309
Target Start/End: Original strand, 264584 - 264615
Alignment:
Q  278 taggctatttagtacaaagtgttgtcaaatag 309  Q
    ||||||||||||||||||||||||||||||||    
T  264584 taggctatttagtacaaagtgttgtcaaatag 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 311
Target Start/End: Complemental strand, 9053950 - 9053920
Alignment:
Q  281 gctatttagtacaaagtgttgtcaaatagcg 311  Q
    |||||||||||||||||||||||||||||||    
T  9053950 gctatttagtacaaagtgttgtcaaatagcg 9053920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 26373110 - 26373152
Alignment:
Q  276 gataggctatttagtacaaagtgttgtcaaatagcggatatag 318  Q
    |||| ||||||||||||||||||||||||||||| || |||||    
T  26373110 gatacgctatttagtacaaagtgttgtcaaatagtggttatag 26373152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 2732936 - 2732997
Alignment:
Q  249 aatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagc 310  Q
    ||||||||||||  |||| | |||  ||||| ||||||||||||||| ||||||||||||||    
T  2732936 aatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagc 2732997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 310
Target Start/End: Original strand, 14399846 - 14399875
Alignment:
Q  281 gctatttagtacaaagtgttgtcaaatagc 310  Q
    ||||||||||||||||||||||||||||||    
T  14399846 gctatttagtacaaagtgttgtcaaatagc 14399875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 770369 - 770405
Alignment:
Q  276 gataggctatttagtacaaagtgttgtcaaatagcgg 312  Q
    |||| |||||||||||||||| |||||||||||||||    
T  770369 gatacgctatttagtacaaagggttgtcaaatagcgg 770405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 34881737 - 34881773
Alignment:
Q  273 cacgataggctatttagtacaaagtgttgtcaaatag 309  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  34881737 cacgatacgctatttagtacaaagtcttgtcaaatag 34881773  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 319
Target Start/End: Original strand, 34581606 - 34581649
Alignment:
Q  276 gataggctatttagtacaaagtgttgtcaaatagcggatatagt 319  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||    
T  34581606 gatacgctatttagtacaaaatgttgtcaaatagcggctatagt 34581649  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 27722480 - 27722414
Alignment:
Q  242 gtagtagaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaata 308  Q
    |||||||||||||||| || ||||| | || ||||||| |||||| |||||||| | ||||||||||    
T  27722480 gtagtagaatttgaactaattgctattgttccacgatatgctattaagtacaaaatattgtcaaata 27722414  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 310
Target Start/End: Original strand, 34417365 - 34417394
Alignment:
Q  281 gctatttagtacaaagtgttgtcaaatagc 310  Q
    ||||||||||||||||||||||||||||||    
T  34417365 gctatttagtacaaagtgttgtcaaatagc 34417394  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 4148443 - 4148471
Alignment:
Q  284 atttagtacaaagtgttgtcaaatagcgg 312  Q
    |||||||||||||||||||||||||||||    
T  4148443 atttagtacaaagtgttgtcaaatagcgg 4148471  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 20989525 - 20989561
Alignment:
Q  282 ctatttagtacaaagtgttgtcaaatagcggatatag 318  Q
    |||||||||||||| |||||||||||||||| |||||    
T  20989525 ctatttagtacaaaatgttgtcaaatagcggctatag 20989561  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 33792195 - 33792227
Alignment:
Q  277 ataggctatttagtacaaagtgttgtcaaatag 309  Q
    |||||||||||||||||||||||||| ||||||    
T  33792195 ataggctatttagtacaaagtgttgttaaatag 33792227  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 34417855 - 34417883
Alignment:
Q  282 ctatttagtacaaagtgttgtcaaatagc 310  Q
    |||||||||||||||||||||||||||||    
T  34417855 ctatttagtacaaagtgttgtcaaatagc 34417883  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 37579625 - 37579589
Alignment:
Q  275 cgataggctatttagtacaaagtgttgtcaaatagcg 311  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  37579625 cgatatgctatttagtactaagtgttgtcaaatagcg 37579589  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 46714280 - 46714352
Alignment:
Q  247 agaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaatagcggatatagt 319  Q
    |||||| ||| ||||||||| | || | ||| | |||||||| | ||||||||||||||||||||| ||||||    
T  46714280 agaattggaagaaactgctattgttccgcgaaacgctatttaatgcaaagtgttgtcaaatagcggctatagt 46714352  T

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Target: scaffold0245 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 23133 - 23190
Alignment:
Q  263 gctactatttcacgataggctatttagtacaaagtgttgtcaaatagcggatatagtt 320  Q
    ||||||||| || ||||  |||||| |||||||||||||||||||| ||| |||||||    
T  23133 gctactattccatgatacactatttggtacaaagtgttgtcaaataacggctatagtt 23190  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 1295223 - 1295280
Alignment:
Q  263 gctactatttcacgataggctatttagtacaaagtgttgtcaaatagcggatatagtt 320  Q
    ||||||||| || ||||  |||||| |||||||||||||||||||| ||| |||||||    
T  1295223 gctactattccatgatacactatttggtacaaagtgttgtcaaataacggctatagtt 1295280  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 24808347 - 24808408
Alignment:
Q  247 agaatttgaacaaactgctactatttcacgataggctatttagtacaaagtgttgtcaaata 308  Q
    |||||||||||||| | ||| |||| | ||||| | |||||||| |||||||||||||||||    
T  24808347 agaatttgaacaaattactattattccgcgatatggtatttagttcaaagtgttgtcaaata 24808408  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 32721454 - 32721490
Alignment:
Q  282 ctatttagtacaaagtgttgtcaaatagcggatatag 318  Q
    |||||||||||||| |||||||||||||| |||||||    
T  32721454 ctatttagtacaaaatgttgtcaaatagccgatatag 32721490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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