View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_41 (Length: 310)
Name: NF14684_low_41
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 10640521 - 10640803
Alignment:
| Q |
12 |
ataagaatgaaagaaaaaacatgactcacagcaacttcaccatcaacatggctttgattttcatcaaacccactaaaatcatcaatatcaccatcaatat |
111 |
Q |
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| T |
10640521 |
ataagaatgaaagaaaaaacatgactcacagcaacttcaccatcaacatggctttgattttcatcaaacccactaaaatcatcaatatcaccatcaatat |
10640620 |
T |
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| Q |
112 |
catcctcagcaacaatgggaacattgggagcctcttcgacaccacgaaacgagtttctagtaacattttgttcatcagcttcatcttcctcttcaacctc |
211 |
Q |
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| T |
10640621 |
catcctcagcaacaatgggaacattgggagcctcttcgacaccgcgaaacgagtttctagtaacattttgttcatcagcttcatcttcctcttcaacctc |
10640720 |
T |
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| Q |
212 |
tctcaattgaagcttagcttccttgataatttttgaactgatgtgagaatcaatcaactcgccttctttctggtggcgctttg |
294 |
Q |
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| T |
10640721 |
tctcaattgaagcttagcttccttgataatttttgaactgatgtgagaatcaatcaactcgccttctttctggtggcgctttg |
10640803 |
T |
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Back To:
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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 11213470 - 11213412
Alignment:
| Q |
40 |
cagcaacttcaccatcaacatggctttgattttcatcaaacccactaaaatcatcaata |
98 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
11213470 |
cagcaaattcaccatcaacatggctttgattttcatcaaatccaccaaaatcatcaata |
11213412 |
T |
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