View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_44 (Length: 298)
Name: NF14684_low_44
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 147 - 285
Target Start/End: Complemental strand, 34533937 - 34533799
Alignment:
| Q |
147 |
tcatagtacttttaattgttaaacaattaataagtcatgattatgttaaagttgaagaatgtcttgttctatatactctcatatcaatctcaacatggat |
246 |
Q |
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| T |
34533937 |
tcatagtacttttaattgttaaacaattaataagtcatgattatgttaaagttgaagaatgtcttgttctatatactctcatatcaatctcaacatggat |
34533838 |
T |
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| Q |
247 |
cttctctaccttcactttgcacaactcacatattcatct |
285 |
Q |
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| T |
34533837 |
cttctctaccttcactttgcacaactcacatattcatct |
34533799 |
T |
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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 41069459 - 41069551
Alignment:
| Q |
150 |
tagtacttttaattgttaaacaattaataagtcatgattatgttaaagttgaagaatgtcttgttctatatactctcatatcaatctcaacat |
242 |
Q |
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|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| | | || ||||||||| |
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| T |
41069459 |
tagtacttttaactgttaaacaattaataactcttgattatgttaaagttgaagaatgtcttgttctatgtactcttagagcagtctcaacat |
41069551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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