View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_47 (Length: 284)
Name: NF14684_low_47
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 58 - 268
Target Start/End: Complemental strand, 8403703 - 8403493
Alignment:
| Q |
58 |
accttcttcaaggaaaatggagagtccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacga |
157 |
Q |
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| T |
8403703 |
accttcttcaaggaaaatggagagtccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacga |
8403604 |
T |
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| Q |
158 |
tgcataacacccataaaatgacacacatgcaccacattcacaatctgtctcataatagtagcagcttcgcgttccgtatagtttcctttttcaataatcc |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8403603 |
tgcataacacccataaaatgacacacatgcaccacattcacaatctgtctcataatagtagcagcttcgcgttccgtatagtttcctttttcaataatcc |
8403504 |
T |
|
| Q |
258 |
tatcaaaaagt |
268 |
Q |
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||||||||||| |
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| T |
8403503 |
tatcaaaaagt |
8403493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 8405088 - 8404966
Alignment:
| Q |
82 |
tccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacgatgcataacacccataaaatgacac |
181 |
Q |
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|||||||||||| ||||| | || ||| || | |||||| ||||||||||||||||||||||||||| || | |||||| || |||||||||||||| |
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| T |
8405088 |
tccaaaatcagtggctttcaaaggagccttatgatctttactagcaagcaagaaattctcaggcttaaggtccctatgcatgacccccataaaatgacaa |
8404989 |
T |
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| Q |
182 |
acatgcaccacattcacaatctg |
204 |
Q |
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|||| |||||||||| |||||| |
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| T |
8404988 |
gcatgaaccacattcataatctg |
8404966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 55168322 - 55168269
Alignment:
| Q |
127 |
aagcaagaaattctcaggcttaagatcacgatgcataacacccataaaatgaca |
180 |
Q |
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| T |
55168322 |
aagcaagaaattctcaggcttcaaatcgcgatgcaaaacacccataaaatgaca |
55168269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 44509861 - 44509813
Alignment:
| Q |
134 |
aaattctcaggcttaagatcacgatgcataacacccataaaatgacaca |
182 |
Q |
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| T |
44509861 |
aaattctccggcttaagatcccgatgcataacaccattaacatgacaca |
44509813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 207
Target Start/End: Complemental strand, 20501601 - 20501451
Alignment:
| Q |
57 |
taccttcttcaaggaaaatggagagtccaaaatcagtagctttaacagcagcattctcatcttttgaagcaagcaagaaattctcaggcttaagatcacg |
156 |
Q |
| |
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|||||||||||| ||||| || | |||||||||||||| |||| | ||||| |||||||| ||| | |||||||||||| || || ||||| | |
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| T |
20501601 |
taccttcttcaatgaaaacagacaaaccaaaatcagtagccttaagaagtgcattttcatctttactagccaacaagaaattctctggtttcagatccct |
20501502 |
T |
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| Q |
157 |
atgcataacacccataaaatgacacacatgcaccacattcacaatctgtct |
207 |
Q |
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||||||||| |||||||||||||| | || || ||||| ||||||||||| |
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| T |
20501501 |
atgcataactcccataaaatgacaaatattaacaacattaacaatctgtct |
20501451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 43453461 - 43453429
Alignment:
| Q |
133 |
gaaattctcaggcttaagatcacgatgcataac |
165 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
43453461 |
gaaattttcaggcttaagatcacgatgcataac |
43453429 |
T |
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