View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14684_low_49 (Length: 278)

Name: NF14684_low_49
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14684_low_49
NF14684_low_49
[»] chr2 (1 HSPs)
chr2 (20-171)||(6667029-6667180)
[»] chr3 (2 HSPs)
chr3 (174-227)||(29314441-29314494)
chr3 (231-260)||(32135870-32135899)
[»] chr8 (3 HSPs)
chr8 (186-257)||(37506341-37506411)
chr8 (174-225)||(36713607-36713658)
chr8 (186-257)||(39527439-39527509)
[»] chr7 (1 HSPs)
chr7 (186-257)||(26013728-26013798)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 6667180 - 6667029
Alignment:
Q  20 gagatgagatcatgcaatttttggggaaaaattgaagaacacaaccattcacttcacaaatactccatagcggttgctgccccaaacgaaggatctgaac 119  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6667180 gagatgagagcatgcaatttttggggaaaaattgaagaacacaaccattcaattcacaaatactccatagctgttgctgccccaaacgaaggatctgaac 6667081  T
Q  120 cagcatcacattcacaacaacttggcggctcataaccatgcttcaaccttca 171  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6667080 cagcatcacattcacaacaacttggcagctcataaccatgcttcaaccttca 6667029  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 29314494 - 29314441
Alignment:
Q  174 acctaaatcatctaaacatcaaccaaaaatcaaatctttccctaagtttcacaa 227  Q
    |||||||||| |||||||||||||||||| |||||||||||| || ||||||||    
T  29314494 acctaaatcaactaaacatcaaccaaaaaacaaatctttccccaaatttcacaa 29314441  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 260
Target Start/End: Original strand, 32135870 - 32135899
Alignment:
Q  231 tgtcaagtcaaattattccaataaactatc 260  Q
    ||||||||||||||||||||||||||||||    
T  32135870 tgtcaagtcaaattattccaataaactatc 32135899  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 37506411 - 37506341
Alignment:
Q  186 taaacatcaaccaaaaatcaaatctttccctaagtttcacaaaagtgtcaagtcaaattattccaataaact 257  Q
    ||||||||||||||||| ||||||||| || || ||||| ||| | |||||||| |||||||||||||||||    
T  37506411 taaacatcaaccaaaaaccaaatcttttcccaaatttcataaagg-gtcaagtctaattattccaataaact 37506341  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 36713658 - 36713607
Alignment:
Q  174 acctaaatcatctaaacatcaaccaaaaatcaaatctttccctaagtttcac 225  Q
    |||||||||| ||||| |||||||||||| |||||||||||| || ||||||    
T  36713658 acctaaatcagctaaagatcaaccaaaaaacaaatctttccccaaatttcac 36713607  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 39527509 - 39527439
Alignment:
Q  186 taaacatcaaccaaaaatcaaatctttccctaagtttcacaaaagtgtcaagtcaaattattccaataaact 257  Q
    ||||||||||||||||| ||||||||| || || |||||   ||| |||||||| |||||||||||||||||    
T  39527509 taaacatcaaccaaaaaccaaatcttttcccaaatttca-ttaagggtcaagtctaattattccaataaact 39527439  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 26013798 - 26013728
Alignment:
Q  186 taaacatcaaccaaaaatcaaatctttccctaagtttcacaaaagtgtcaagtcaaattattccaataaact 257  Q
    ||||||||||||||||| ||||||||| || |  ||||| ||| | |||||||| |||||||||||||||||    
T  26013798 taaacatcaaccaaaaaccaaatcttttcccacatttcataaagg-gtcaagtctaattattccaataaact 26013728  T

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