View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14684_low_5 (Length: 581)

Name: NF14684_low_5
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14684_low_5
NF14684_low_5
[»] chr6 (2 HSPs)
chr6 (397-572)||(6633722-6633896)
chr6 (479-572)||(18626264-18626357)
[»] chr7 (9 HSPs)
chr7 (397-572)||(16301862-16302037)
chr7 (442-572)||(16252516-16252646)
chr7 (400-530)||(5057701-5057831)
chr7 (400-500)||(7228032-7228132)
chr7 (418-500)||(2478648-2478730)
chr7 (397-439)||(16249835-16249877)
chr7 (414-519)||(23103082-23103186)
chr7 (397-528)||(25992414-25992545)
chr7 (398-517)||(45956271-45956389)
[»] chr1 (7 HSPs)
chr1 (398-572)||(17595873-17596047)
chr1 (412-572)||(30747511-30747670)
chr1 (412-572)||(30768962-30769121)
chr1 (409-572)||(30746234-30746397)
chr1 (409-572)||(30767685-30767848)
chr1 (401-502)||(19883679-19883780)
chr1 (400-500)||(15243805-15243905)
[»] scaffold0004 (1 HSPs)
scaffold0004 (398-572)||(382444-382619)
[»] chr4 (10 HSPs)
chr4 (409-572)||(9196759-9196921)
chr4 (398-503)||(2328946-2329051)
chr4 (410-572)||(9219327-9219488)
chr4 (398-503)||(38811591-38811699)
chr4 (398-555)||(9246676-9246833)
chr4 (398-572)||(5066260-5066426)
chr4 (398-500)||(27304187-27304289)
chr4 (426-514)||(11489820-11489908)
chr4 (414-500)||(19943553-19943639)
chr4 (19-63)||(50935222-50935266)
[»] chr2 (5 HSPs)
chr2 (398-572)||(30969180-30969353)
chr2 (411-524)||(1762695-1762807)
chr2 (398-519)||(24927820-24927940)
chr2 (398-519)||(25677444-25677564)
chr2 (461-500)||(1762811-1762850)
[»] chr8 (4 HSPs)
chr8 (409-538)||(15258589-15258722)
chr8 (416-500)||(9243032-9243116)
chr8 (398-518)||(33349956-33350075)
chr8 (400-472)||(25988216-25988288)
[»] scaffold0135 (1 HSPs)
scaffold0135 (410-572)||(29978-30139)
[»] scaffold1952 (1 HSPs)
scaffold1952 (398-528)||(573-703)
[»] scaffold1826 (1 HSPs)
scaffold1826 (398-545)||(786-933)
[»] chr3 (4 HSPs)
chr3 (420-518)||(14148832-14148931)
chr3 (400-467)||(14073198-14073265)
chr3 (420-517)||(13608278-13608375)
chr3 (414-488)||(4288314-4288388)
[»] chr5 (2 HSPs)
chr5 (414-521)||(27892796-27892902)
chr5 (414-493)||(32578411-32578490)


Alignment Details
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 397 - 572
Target Start/End: Complemental strand, 6633896 - 6633722
Alignment:
Q  397 gtgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtct 496  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||  |    
T  6633896 gtgataaccgaaaaataagttggttatcacgttgcacttagcccccataatggacaagtaattgaatgaatgcattgccttaaacatctaatcagtgctt 6633797  T
Q  497 attttagtattatatagttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    ||||||| ||| |||||| ||||||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||    
T  6633796 attttaggattttatagtcttaagtgtttttagtac-ttggaactagtaatgcttgtttatgatgtttgatgatgt 6633722  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 479 - 572
Target Start/End: Original strand, 18626264 - 18626357
Alignment:
Q  479 aacatctaatcagtgtctattttagtattatatagttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    ||||||||||||||||||||||||| ||| | ||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  18626264 aacatctaatcagtgtctattttaggattttttagtttttagtgtttttagtactttggaactagtaatgcttgtttatgatgtttgatgatgt 18626357  T

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Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 397 - 572
Target Start/End: Complemental strand, 16302037 - 16301862
Alignment:
Q  397 gtgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtct 496  Q
    ||||||||||  |||||||| | |||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||||||||  |    
T  16302037 gtgataaccggaaaataagtggtttatcacgttgcacttagcccccataatggacaagtaattgagtgattgcaatgccttaaacatataatcagtgcat 16301938  T
Q  497 attttagtattatatagttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    ||||||| ||| ||  |||||||||||||||| ||||||||||||||||||| |||||||| || |||||||||||    
T  16301937 attttaggattttaatgttttaagtgtttttagtactttggaactagtaatgcttgtttatgatatttgatgatgt 16301862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 442 - 572
Target Start/End: Original strand, 16252516 - 16252646
Alignment:
Q  442 catattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatatagttttaagtgtttttaatactttggaact 541  Q
    |||| |||| |||||||| |||||||||| | |||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||    
T  16252516 cataatggaaaagtaatttagtgattgcaataccttaaacatcttatcagtgtctattttaggattttatagttttaagtatttttagtactttggaact 16252615  T
Q  542 agtaatggttgtttataatgtttgatgatgt 572  Q
    ||||||  |||||||| || |||||||||||    
T  16252616 agtaattcttgtttatgatatttgatgatgt 16252646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 400 - 530
Target Start/End: Complemental strand, 5057831 - 5057701
Alignment:
Q  400 ataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctatt 499  Q
    |||||||  ||||||||||||||||| ||||||||||||   |||| ||||||| ||||||||||||| || ||||| | |||||||||||||| |||||    
T  5057831 ataaccggtaaataagttggttatcacgttgcacttagctctcataatggacaaataattgagtgattacaatgcctaagacatctaatcagtgactatt 5057732  T
Q  500 ttagtattatatagttttaagtgtttttaat 530  Q
    |||  ||| |||| |||||  ||||||||||    
T  5057731 ttaagattttataattttagttgtttttaat 5057701  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 500
Target Start/End: Original strand, 7228032 - 7228132
Alignment:
Q  400 ataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctatt 499  Q
    ||||||||||||  |||||||||||| ||||||||||||  | ||| || ||||| ||||||||||||| ||||||| | | |||||||||||| |||||    
T  7228032 ataaccgacaaaatagttggttatcacgttgcacttagctcctataatgaacaagaaattgagtgattgaattgcctaagagatctaatcagtgcctatt 7228131  T
Q  500 t 500  Q
    |    
T  7228132 t 7228132  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 418 - 500
Target Start/End: Complemental strand, 2478730 - 2478648
Alignment:
Q  418 ggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattt 500  Q
    ||||||||||||||||||| || ||||| || ||||| |||| ||||| |||||  ||| |||||||||||||||| ||||||    
T  2478730 ggttatcatgttgcacttatcccccataatgaacaagaaattaagtgaatgcatgacctaaaacatctaatcagtgactattt 2478648  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 439
Target Start/End: Original strand, 16249835 - 16249877
Alignment:
Q  397 gtgataaccgacaaataagttggttatcatgttgcacttagcc 439  Q
    |||||||||| |||||||||||||||||| |||||||||||||    
T  16249835 gtgataaccggcaaataagttggttatcacgttgcacttagcc 16249877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 519
Target Start/End: Original strand, 23103082 - 23103186
Alignment:
Q  414 agttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatatag 513  Q
    ||||||||||||||||||||||| || ||||| |  ||||| || ||||||| |||| || || || |||||||| |||| ||| ||||| ||| |||||    
T  23103082 agttggttatcatgttgcacttatcccccataattaacaagaaaatgagtgaatgcaatgtctaaagcatctaattagtgccta-tttaggattttatag 23103180  T
Q  514 ttttaa 519  Q
    ||||||    
T  23103181 ttttaa 23103186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 528
Target Start/End: Complemental strand, 25992545 - 25992414
Alignment:
Q  397 gtgataaccgacaaataagttggttatcatgttgcacttagcctccat-attggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtc 495  Q
    ||||||||| |||||| ||||||||||||  ||||||||| | ||| | | || || || |||| |||||||||||||||| | |||||||||  ||| |    
T  25992545 gtgataaccaacaaattagttggttatcacattgcacttaac-tccttgaatgaacgagaaatttagtgattgcattgcctaagacatctaattggtgac 25992447  T
Q  496 tattttagtattatatagttttaagtgttttta 528  Q
    |||||||| ||  ||||||||||  ||||||||    
T  25992446 tattttaggatgttatagttttagttgttttta 25992414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 517
Target Start/End: Original strand, 45956271 - 45956389
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    ||||||||| ||||  |||||||||||| |||||| ||| | |||||| || ||| | |||||||||||| ||||| || | |||| | ||| |||||||    
T  45956271 tgataaccggcaaaatagttggttatcacgttgcatttaacttccataatgaacacgaaattgagtgattacattgtctaagacatttgatcggtgtcta 45956370  T
Q  498 ttttagtattatatagtttt 517  Q
     ||||| ||| |||||||||    
T  45956371 -tttaggattttatagtttt 45956389  T

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Target: chr1 (Bit Score: 91; Significance: 8e-44; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 398 - 572
Target Start/End: Original strand, 17595873 - 17596047
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    |||||||| ||||||||||||||||||| |||||| | | ||   ||||| ||| ||| |||||||||||| |||||||| ||||||||| || ||||||    
T  17595873 tgataaccaacaaataagttggttatcacgttgcattcaacccttatatttgactagttattgagtgattgtattgccttcaacatctaaacaatgtcta 17595972  T
Q  498 ttttagtattatatagttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    |||||| ||| ||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  17595973 ttttaggattttatagttttaaatgtttttagtactttggaactagtaatgcttgtttatgatgtttgatgatgt 17596047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 412 - 572
Target Start/End: Original strand, 30747511 - 30747670
Alignment:
Q  412 taagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatat 511  Q
    |||||||||||||||||| ||||||||| | |||| | ||||||||| ||||||||||| |  |||||||||||||||| |||||||||||  ||| |||    
T  30747511 taagttggttatcatgttacacttagcccctatatag-acaagtaatcgagtgattgcaatttcttaaacatctaatcactgtctattttaagattttat 30747609  T
Q  512 agttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    |||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  30747610 agttttaaatgtttttattactttggaactagtaatgcttgtttattatgtttgatgatgt 30747670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 412 - 572
Target Start/End: Original strand, 30768962 - 30769121
Alignment:
Q  412 taagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatat 511  Q
    |||||||||||||||||| ||||||||| | |||| | ||||||||| ||||||||||| |  |||||||||||||||| |||||||||||  ||| |||    
T  30768962 taagttggttatcatgttacacttagcccctatatag-acaagtaatcgagtgattgcaatttcttaaacatctaatcactgtctattttaagattttat 30769060  T
Q  512 agttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    |||||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  30769061 agttttaaatgtttttattactttggaactagtaatgcttgtttattatgtttgatgatgt 30769121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 409 - 572
Target Start/End: Original strand, 30746234 - 30746397
Alignment:
Q  409 aaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtatta 508  Q
    |||||||||||||||||  || || |||||| | ||| | || ||||||| || |||||||| || ||||||||| |||||| |||||||||||| |||     
T  30746234 aaataagttggttatcacattccagttagcccctataatagataagtaatggaatgattgcaatgtcttaaacatttaatcaatgtctattttaggattt 30746333  T
Q  509 tatagttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    ||||||||||| | |||||| ||||||| ||||||||||| |||||||| ||||||||||||||    
T  30746334 tatagttttaaatatttttagtactttgaaactagtaatgcttgtttatgatgtttgatgatgt 30746397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 409 - 572
Target Start/End: Original strand, 30767685 - 30767848
Alignment:
Q  409 aaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtatta 508  Q
    |||||||||||||||||  || || |||||| | ||| | || ||||||| || |||||||| || ||||||||| |||||| |||||||||||| |||     
T  30767685 aaataagttggttatcacattccagttagcccctataatagataagtaatggaatgattgcaatgtcttaaacatttaatcaatgtctattttaggattt 30767784  T
Q  509 tatagttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    ||||||||||| | |||||| ||||||| ||||||||||| |||||||| ||||||||||||||    
T  30767785 tatagttttaaatatttttagtactttgaaactagtaatgcttgtttatgatgtttgatgatgt 30767848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 502
Target Start/End: Complemental strand, 19883780 - 19883679
Alignment:
Q  401 taaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattt 500  Q
    ||||||| || | |||||||||||| |||||||||| |  |||||  ||||||| ||| ||||||||||||||| | | |||||||||||||| ||||||    
T  19883780 taaccgaaaatttagttggttatcacgttgcacttaactcccataagggacaagaaatcgagtgattgcattgcttaagacatctaatcagtgactattt 19883681  T
Q  501 ta 502  Q
    ||    
T  19883680 ta 19883679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 400 - 500
Target Start/End: Original strand, 15243805 - 15243905
Alignment:
Q  400 ataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctatt 499  Q
    |||||| ||||||  || |||||||||||| |||||| || ||||| || ||||| |||||||||| |||||  ||| |||||||||||||||| |||||    
T  15243805 ataaccaacaaatttgtaggttatcatgttacacttatcccccataatgaacaagaaattgagtgaatgcatgacctaaaacatctaatcagtgactatt 15243904  T
Q  500 t 500  Q
    |    
T  15243905 t 15243905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 398 - 572
Target Start/End: Original strand, 382444 - 382619
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    ||||||||| ||||| ||||||||||||||||||||| | || | |||||||||||||  |||||||||||||||| ||| |||||||||| ||||||||    
T  382444 tgataaccggcaaatcagttggttatcatgttgcactaaacccctatattggacaagttgttgagtgattgcattgtctttaacatctaattagtgtcta 382543  T
Q  498 ttttagta-ttatatagttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    |||||| | || |||||||||| ||| ||||| ||||||||||||||||||| || |||||  |||||||||||||    
T  382544 ttttaggatttttatagttttatgtgcttttagtactttggaactagtaatgcttatttatgttgtttgatgatgt 382619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 409 - 572
Target Start/End: Original strand, 9196759 - 9196921
Alignment:
Q  409 aaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtatta 508  Q
    |||||| ||| |||||| |||||||||| |    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| || |||     
T  9196759 aaataaattgattatcacgttgcacttaactgttatattggacaagtaattgagtgattgcattgcctttaacatctaatctgtgtttattt-aggattt 9196857  T
Q  509 tatagttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| |||||||    
T  9196858 tatagttttaagtgtttttagtactttggaactagtaatgcttgtttatcatgtttaatgatgt 9196921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 398 - 503
Target Start/End: Complemental strand, 2329051 - 2328946
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    |||||||||||||||||||||||||||| |||||||||||||  ||||  | ||||||||||||||||||||| ||||||||||||||||||| || |||    
T  2329051 tgataaccgacaaataagttggttatcacgttgcacttagcccacataacgtacaagtaattgagtgattgcaatgccttaaacatctaatcattgccta 2328952  T
Q  498 ttttag 503  Q
    ||||||    
T  2328951 ttttag 2328946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 410 - 572
Target Start/End: Original strand, 9219327 - 9219488
Alignment:
Q  410 aataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattat 509  Q
    ||||| ||||||| || |||||||||| |    ||||||||||||||||| |||||||||| ||| |||| ||||||||  |||| |||||||| ||| |    
T  9219327 aataaattggttaccacgttgcacttaactcttatattggacaagtaatttagtgattgcagtgctttaa-catctaatatgtgtttattttagaatttt 9219425  T
Q  510 atagttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    ||  ||||||||||||||| || |||||||||||||||| |||||||| ||||||||||||||    
T  9219426 atgcttttaagtgtttttagtattttggaactagtaatgcttgtttatgatgtttgatgatgt 9219488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 398 - 503
Target Start/End: Original strand, 38811591 - 38811699
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtg---attgcattgccttaaacatctaatcagtgt 494  Q
    ||||||||| | |||||||||||||||| ||||||||||||| || || ||||||||||||||||||   ||||||||| |||||||||||||||||||     
T  38811591 tgataaccggctaataagttggttatcacgttgcacttagcccccgtaatggacaagtaattgagtgattattgcattgtcttaaacatctaatcagtgc 38811690  T
Q  495 ctattttag 503  Q
    |||||||||    
T  38811691 ctattttag 38811699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 398 - 555
Target Start/End: Original strand, 9246676 - 9246833
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    |||||||||  |||||| ||||||||||  ||||||||| |    ||||||||||||||| ||||||||||||||| ||| |||||||||||  ||  ||    
T  9246676 tgataaccggtaaataaattggttatcagattgcacttaactcttatattggacaagtaactgagtgattgcattgtctttaacatctaatctatgctta 9246775  T
Q  498 ttttagtattatatagttttaagtgtttttaatactttggaactagtaatggttgttt 555  Q
     ||||| ||| || ||||||||||||||||| ||||||| ||||||||||| ||||||    
T  9246776 gtttaggattttaaagttttaagtgtttttagtactttgaaactagtaatgcttgttt 9246833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 398 - 572
Target Start/End: Original strand, 5066260 - 5066426
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    ||||||| || ||||||||| ||||||| |||||||||| || ||||| |||||| ||        ||||| | ||||||||| || |||| ||||  ||    
T  5066260 tgataactgaaaaataagttagttatcacgttgcacttaacccccataatggacaggt--------gattgtaatgccttaaaaatttaattagtgcata 5066351  T
Q  498 ttttagtattatatagttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    |||||| ||| |||||||||||||||||||  ||||||||||||||||||| |||||| | ||||||||||||||    
T  5066352 ttttaggattttatagttttaagtgttttttgtactttggaactagtaatgcttgtttgtgatgtttgatgatgt 5066426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 398 - 500
Target Start/End: Original strand, 27304187 - 27304289
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    ||||||| ||||||  ||||| |||||||||||||||||||  ||||| |||| ||| ||||||||||||||||||||| | || |||||| |||| |||    
T  27304187 tgataactgacaaaatagttgattatcatgttgcacttagctcccataatggataagaaattgagtgattgcattgcctgagacgtctaattagtgccta 27304286  T
Q  498 ttt 500  Q
    |||    
T  27304287 ttt 27304289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 426 - 514
Target Start/End: Complemental strand, 11489908 - 11489820
Alignment:
Q  426 tgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatatagt 514  Q
    |||||||||||||| | ||| ||||||  ||||||||||||| || ||||| ||| ||||||||| |||||||||||| ||| ||||||    
T  11489908 tgttgcacttagcccctataatggacatataattgagtgatttcaatgcctcaaatatctaatcattgtctattttaggattttatagt 11489820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 500
Target Start/End: Complemental strand, 19943639 - 19943553
Alignment:
Q  414 agttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattt 500  Q
    ||||||||||||||||||||||| |  ||||| || || || |||||||| | |||||  ||| |||||| ||||||||||||||||    
T  19943639 agttggttatcatgttgcacttatctcccataatgaacgaggaattgagtaaatgcatgacctaaaacatataatcagtgtctattt 19943553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 50935222 - 50935266
Alignment:
Q  19 tatatggattaaagcaagctcctagagcatagaataagagaattg 63  Q
    |||||||||||||||| ||||||||||||| ||| |||| |||||    
T  50935222 tatatggattaaagcaggctcctagagcatggaacaagaaaattg 50935266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 398 - 572
Target Start/End: Original strand, 30969180 - 30969353
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    |||||||| | ||||||||||||||||| ||||||||||||| | ||| |||| |||||||||| |||||||| || |||| ||||||||||| || |||    
T  30969180 tgataaccaagaaataagttggttatcacgttgcacttagcccctataatggataagtaattgaatgattgcaatgtcttacacatctaatcaatgccta 30969279  T
Q  498 ttttagtattatatagttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    |||||| ||| ||||| |||||||| ||||| |||||||||| |||||||  |||||||| ||||||||||||||    
T  30969280 ttttagaatt-tatagctttaagtggttttagtactttggaattagtaatacttgtttatgatgtttgatgatgt 30969353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 411 - 524
Target Start/End: Original strand, 1762695 - 1762807
Alignment:
Q  411 ataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattata 510  Q
    ||||||| ||||||| |||||||||  || | ||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||||||||  ||| |     
T  1762695 ataagttagttatcacgttgcacttgacccctatattggacaaataat-gagtgattgcattgcctttaacatctaatcggtgtctattttaagattttt 1762793  T
Q  511 tagttttaagtgtt 524  Q
    ||||||||||||||    
T  1762794 tagttttaagtgtt 1762807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 519
Target Start/End: Original strand, 24927820 - 24927940
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    ||||||||| ||||  |||||||||||||||||||||||||  |  || || ||| | |||||||||||| |||| ||| | |||||||||| ||| |||    
T  24927820 tgataaccggcaaaatagttggttatcatgttgcacttagctcctgtaatgaacaggaaattgagtgatttcattacctaagacatctaatcggtgccta 24927919  T
Q  498 ttttagtattatatagttttaa 519  Q
     ||||| ||| |||||||||||    
T  24927920 -tttaggattttatagttttaa 24927940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 519
Target Start/End: Original strand, 25677444 - 25677564
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    ||||||||| ||||   |||||||||||||||||||||| |  | ||| || ||||| |||||||||||| |||| ||| | |||||||||| ||| |||    
T  25677444 tgataaccggcaaaattgttggttatcatgttgcacttaactcctataatgaacaagaaattgagtgatttcattacctaagacatctaatcggtgccta 25677543  T
Q  498 ttttagtattatatagttttaa 519  Q
     ||||| ||| |||||||||||    
T  25677544 -tttaggattttatagttttaa 25677564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 500
Target Start/End: Original strand, 1762811 - 1762850
Alignment:
Q  461 agtgattgcattgccttaaacatctaatcagtgtctattt 500  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  1762811 agtgattgcattgcctttaacatctaatcggtgtctattt 1762850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 409 - 538
Target Start/End: Complemental strand, 15258722 - 15258589
Alignment:
Q  409 aaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaaca----tctaatcagtgtctattttagt 504  Q
    |||||||||||||||||  |||||||||||| |||||||||||||||| |||||||||||||||| |||||  |    | |||||||||||||||||||     
T  15258722 aaataagttggttatcacattgcacttagcccccatattggacaagtatttgagtgattgcattgacttaagtaatagtttaatcagtgtctattttagg 15258623  T
Q  505 attatatagttttaagtgtttttaatactttgga 538  Q
    ||| ||||||||||||| |||||| |||||||||    
T  15258622 attttatagttttaagtatttttagtactttgga 15258589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 416 - 500
Target Start/End: Complemental strand, 9243116 - 9243032
Alignment:
Q  416 ttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattt 500  Q
    |||||||| |||||||||||| || ||||| |||||||| |||| |||||||| ||||||| | |||| |||||| |||||||||    
T  9243116 ttggttatgatgttgcacttaacccccataatggacaagaaatttagtgattgaattgcctaagacatttaatcaatgtctattt 9243032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 518
Target Start/End: Complemental strand, 33350075 - 33349956
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    ||||||| | ||||| ||||||||||||  |||||||||||   |||| |||||||| |||| ||||||||||||| || | |||||| |||| || |||    
T  33350075 tgataactggcaaattagttggttatcacattgcacttagctctcataatggacaagaaattaagtgattgcattggctaagacatcttatca-tgacta 33349977  T
Q  498 ttttagtattatatagtttta 518  Q
    |||||| ||| |||| |||||    
T  33349976 ttttaggattttataatttta 33349956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 472
Target Start/End: Original strand, 25988216 - 25988288
Alignment:
Q  400 ataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcatt 472  Q
    ||||||| ||||  |||| ||||||| |||||||||||| | |||| || ||||| |||||||||| ||||||    
T  25988216 ataaccggcaaaatagtttgttatcacgttgcacttagctttcataatgaacaagaaattgagtgaatgcatt 25988288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 410 - 572
Target Start/End: Original strand, 29978 - 30139
Alignment:
Q  410 aataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattat 509  Q
    ||||| ||||||| || |||||||||| |    ||||||||||||||||| |||||||||| ||| |||| ||||||||  |||| |||||||| ||| |    
T  29978 aataaattggttaccacgttgcacttaactcttatattggacaagtaatttagtgattgcagtgctttaa-catctaatatgtgtttattttagaatttt 30076  T
Q  510 atagttttaagtgtttttaatactttggaactagtaatggttgtttataatgtttgatgatgt 572  Q
    ||  ||||||||||||||| || |||||||||||||||| |||||||| ||||||||||||||    
T  30077 atgcttttaagtgtttttagtattttggaactagtaatgcttgtttatgatgtttgatgatgt 30139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1952 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold1952
Description:

Target: scaffold1952; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 398 - 528
Target Start/End: Original strand, 573 - 703
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    |||||||||  |||||| ||||||| |||||||| |||| |    ||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||    
T  573 tgataaccggtaaataacttggttaccatgttgcgcttaactcttatattggacaagtaattgagtgattgcattgcctttaacatctaatctgtgttta 672  T
Q  498 ttttagtattatatagttttaagtgttttta 528  Q
    |||||| ||| ||| ||||||||||| ||||    
T  673 ttttaggattttatggttttaagtgtgttta 703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1826 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold1826
Description:

Target: scaffold1826; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 398 - 545
Target Start/End: Original strand, 786 - 933
Alignment:
Q  398 tgataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtcta 497  Q
    |||||||||  |||||| ||| |||||| |||||||||  |    ||| ||||||||||||||||||||||||||| ||| |||||||||||  ||  ||    
T  786 tgataaccggtaaataaattgattatcaggttgcactttactcttatagtggacaagtaattgagtgattgcattgtctttaacatctaatctatgctta 885  T
Q  498 ttttagtattatatagttttaagtgtttttaatactttggaactagta 545  Q
     ||||| ||| || ||||||||||||||||| ||||||||||| ||||    
T  886 gtttaggattttaaagttttaagtgtttttagtactttggaacaagta 933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 420 - 518
Target Start/End: Complemental strand, 14148931 - 14148832
Alignment:
Q  420 ttatcatgttgcacttagcc-tccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatatagtttta 518  Q
    |||||| ||||||||||||| |||||| ||||||||||||||||||| || | ||||||||||||||||| |||| ||||||||  ||| ||||||||||    
T  14148931 ttatcaagttgcacttagccctccataatggacaagtaattgagtgaatgtaatgccttaaacatctaattagtgcctattttaagattttatagtttta 14148832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 400 - 467
Target Start/End: Complemental strand, 14073265 - 14073198
Alignment:
Q  400 ataaccgacaaataagttggttatcatgttgcacttagcctccatattggacaagtaattgagtgatt 467  Q
    |||||||  ||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||    
T  14073265 ataaccggaaaataagttggttatcacgttgcacttagcccccataatggacaagtaattaagtgatt 14073198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 517
Target Start/End: Complemental strand, 13608375 - 13608278
Alignment:
Q  420 ttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatatagtttt 517  Q
    ||||||||||||| | |||| ||||| | ||| ||||||| |||||||| | | |||||| ||||||||||||| ||||||||  ||| |||||||||    
T  13608375 ttatcatgttgcaataagcccccataatagactagtaattaagtgattgtaattccttaatcatctaatcagtgcctattttaagattttatagtttt 13608278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 488
Target Start/End: Complemental strand, 4288388 - 4288314
Alignment:
Q  414 agttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaat 488  Q
    |||||||||||| |||||||||| |  ||||| || ||||| || ||||||| |||||||||| || ||||||||    
T  4288388 agttggttatcacgttgcacttatctcccataatgaacaagaaactgagtgaatgcattgcctaaagcatctaat 4288314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 521
Target Start/End: Original strand, 27892796 - 27892902
Alignment:
Q  414 agttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtgtctattttagtattatatag 513  Q
    |||||||||||| |||||||||| |    ||| |||||||| |||||| |||| ||||||||| | | ||||||| |||||||| ||||||||| |||||    
T  27892796 agttggttatcacgttgcacttaactctaataatggacaagaaattgattgatcgcattgcctaagatatctaataagtgtcta-tttagtattttatag 27892894  T
Q  514 ttttaagt 521  Q
     |||||||    
T  27892895 atttaagt 27892902  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 493
Target Start/End: Original strand, 32578411 - 32578490
Alignment:
Q  414 agttggttatcatgttgcacttagcctccatattggacaagtaattgagtgattgcattgccttaaacatctaatcagtg 493  Q
    |||||||||||| ||||||||||||  ||||| |||  ||  ||||||||||||||||||||| | ||||| ||| ||||    
T  32578411 agttggttatcacgttgcacttagctcccataatgggtaaagaattgagtgattgcattgcctaagacatcaaataagtg 32578490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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