View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_50 (Length: 275)
Name: NF14684_low_50
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 37 - 239
Target Start/End: Original strand, 33224202 - 33224404
Alignment:
| Q |
37 |
ttttaaaatttgatatctaatttaaggatcgactaatctaaaaggtataattttaccgtccatttgcgagggtctcatttaaagtcagagtcaaaaattc |
136 |
Q |
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| T |
33224202 |
ttttaaaacttgatatctgatttaaggatcgattaatctaaaaagtataattttaccgtccatttacgagggtctcatttaaagtcagagtcaaaaattc |
33224301 |
T |
|
| Q |
137 |
cgcatggactagtcaaccaaaattgacacaagaggaaaattgaggttattctatattataaacttactttgttttgttgtatttcacgttattgaagatt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33224302 |
tgcatggactagtcaaccaaaattgacacaagaggaaaattgaggttattctatattataaacttactttgttttgttgtatttcacgttattgaagatt |
33224401 |
T |
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| Q |
237 |
aac |
239 |
Q |
| |
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||| |
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| T |
33224402 |
aac |
33224404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 72
Target Start/End: Complemental strand, 9110567 - 9110536
Alignment:
| Q |
41 |
aaaatttgatatctaatttaaggatcgactaa |
72 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
9110567 |
aaaatttgatatctaatttaaggatcgactaa |
9110536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 32845273 - 32845241
Alignment:
| Q |
41 |
aaaatttgatatctaatttaaggatcgactaat |
73 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
32845273 |
aaaatttgatatctaatttaagaatcgactaat |
32845241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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