View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14684_low_53 (Length: 264)

Name: NF14684_low_53
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14684_low_53
NF14684_low_53
[»] chr3 (15 HSPs)
chr3 (12-247)||(46490395-46490629)
chr3 (12-244)||(46479478-46479707)
chr3 (36-246)||(46497654-46497864)
chr3 (34-247)||(5159982-5160195)
chr3 (49-247)||(5155967-5156165)
chr3 (69-139)||(46549300-46549370)
chr3 (33-139)||(47397635-47397741)
chr3 (82-196)||(45883991-45884105)
chr3 (33-233)||(51942836-51943036)
chr3 (82-151)||(46473684-46473753)
chr3 (92-148)||(46526729-46526785)
chr3 (92-135)||(46544222-46544265)
chr3 (64-130)||(4581744-4581810)
chr3 (92-126)||(4614165-4614199)
chr3 (96-138)||(45902723-45902765)
[»] chr7 (6 HSPs)
chr7 (96-246)||(17744877-17745027)
chr7 (93-213)||(17708039-17708159)
chr7 (93-219)||(16721916-16722042)
chr7 (93-219)||(17698930-17699056)
chr7 (92-219)||(17717862-17717989)
chr7 (92-219)||(17735692-17735819)
[»] chr4 (3 HSPs)
chr4 (33-151)||(35162145-35162263)
chr4 (60-212)||(35155151-35155303)
chr4 (33-247)||(15555718-15555932)
[»] chr8 (2 HSPs)
chr8 (33-196)||(9692974-9693136)
chr8 (33-212)||(9675936-9676115)
[»] chr2 (2 HSPs)
chr2 (82-151)||(20358884-20358953)
chr2 (82-151)||(20169333-20169402)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 46490395 - 46490629
Alignment:
Q  12 gtgagaagaactcaacttattatctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggc 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46490395 gtgaaaagaactcaacttattatctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggc 46490494  T
Q  112 tgcaaaagagacaaatggtattattaaacaacttcttccttccaggtcggttaacagcttaacaaggctaatcattgctaatgcactatacttcaaagga 211  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  46490495 tgcaaaa-agacaaatggtattattaaacaacttcttccttccaggtcggttaatagcttaaccaggctaatcattgctaatgcactatacttcaaagga 46490593  T
Q  212 gtgtggaatgataagtttgatgcttcaaaaacgaaa 247  Q
    ||||||||||||||||||||||||||||||||||||    
T  46490594 gtgtggaatgataagtttgatgcttcaaaaacgaaa 46490629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 46479478 - 46479707
Alignment:
Q  12 gtgagaagaactcaacttattatctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggc 111  Q
    |||| ||| ||||||||||||   ||| || |||||||||||| || ||||||||||||||||||||   ||||||| |||| |||||||||| ||||||    
T  46479478 gtgaaaagtactcaacttatt---tatatgcataattgatttttaaatttgatatggttttaaaggctgttgaagtgaccaatgaagtgaattcatgggc 46479574  T
Q  112 tgcaaaagagacaaatggtattattaaacaacttcttccttccaggtcggttaacagcttaacaaggctaatcattgctaatgcactatacttcaaagga 211  Q
    || |||||||||||||||  |||||||| |||||||||||    ||||||| ||||    |||  |||| ||| |||| |||||||||||||||||||||    
T  46479575 tgaaaaagagacaaatggccttattaaagaacttcttcctcttgggtcggtcaacaatgcaacccggctcatctttgccaatgcactatacttcaaagga 46479674  T
Q  212 gtgtggaatgataagtttgatgcttcaaaaacg 244  Q
    | |||||||||||||||||||||||||||||||    
T  46479675 gcgtggaatgataagtttgatgcttcaaaaacg 46479707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 36 - 246
Target Start/End: Original strand, 46497654 - 46497864
Alignment:
Q  36 tatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtattat 135  Q
    |||||| |||||||||||| | |||||||||||||||||||||   |||||||  ||| ||||||||||||||||||| || ||||||||||||| ||||    
T  46497654 tatttggataattgattttaatttttgatatggttttaaaggctgttgaagtgaacaatgaagtgaatttatgggctgaaagagagacaaatggtcttat 46497753  T
Q  136 taaacaacttcttccttccaggtcggttaacagcttaacaaggctaatcattgctaatgcactatacttcaaaggagtgtggaatgataagtttgatgct 235  Q
    |||| ||||||||||||   |||||||  ||  ||| ||   ||||||  ||||||||||||||||||| ||||||| |||||||||||| |||||||||    
T  46497754 taaagaacttcttcctttagggtcggtcgactactttactcagctaatatttgctaatgcactatactttaaaggagagtggaatgataattttgatgct 46497853  T
Q  236 tcaaaaacgaa 246  Q
    ||  |||||||    
T  46497854 tcggaaacgaa 46497864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 247
Target Start/End: Original strand, 5159982 - 5160195
Alignment:
Q  34 tctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtatt 133  Q
    |||||||| |||||||||||| || |||||||| ||||| ||||| | ||||||| | |||||||||||||||||||||| |||||||||||||||  ||    
T  5159982 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaaagagacaaatggcctt 5160081  T
Q  134 attaaacaacttcttccttccaggtcggttaacagcttaacaaggctaatcattgctaatgcactatacttcaaaggagtgtggaatgataagtttgatg 233  Q
    |||||| |||||||||||   || || ||| | || ||||| || || ||| ||||||||||||| ||||| |||||||  |||| ||||||||||||||    
T  5160082 attaaagaacttcttcctctaagatcagttgataggttaaccagactcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatg 5160181  T
Q  234 cttcaaaaacgaaa 247  Q
     ||| |||||||||    
T  5160182 tttcgaaaacgaaa 5160195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 49 - 247
Target Start/End: Original strand, 5155967 - 5156165
Alignment:
Q  49 gattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttctt 148  Q
    |||||| || |||||| |||||||||||||   ||||||| | ||||||| |||||||||||||| |||||||||||||||  |||||||| ||||||||    
T  5155967 gatttttaaatttgatttggttttaaaggctgttgaagtgactaaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttctt 5156066  T
Q  149 ccttccaggtcggttaacagcttaacaaggctaatcattgctaatgcactatacttcaaaggagtgtggaatgataagtttgatgcttcaaaaacgaaa 247  Q
    ||| | || || ||| | ||||||||  | || ||| ||||||||||||| ||||| |||||||  |||| ||| |||||||||| ||  |||||||||    
T  5156067 cctccaagatcagttgatagcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgagaagtttgatgttttgaaaacgaaa 5156165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 46549370 - 46549300
Alignment:
Q  69 ttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtattattaaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  46549370 ttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgaaaaagagacaaatggtcttattaaa 46549300  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 47397741 - 47397635
Alignment:
Q  33 atctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtat 132  Q
    ||||||||| |||| ||||||| || |||||||||| |||||||||   ||||||||| |||||||| |||||||||||   ||| |||||||||||| |    
T  47397741 atctatttgcataactgatttttaaatttgatatgggtttaaaggctgatgaagtggctaaagaagtaaatttatgggccaaaaatgagacaaatggttt 47397642  T
Q  133 tattaaa 139  Q
    |||||||    
T  47397641 tattaaa 47397635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 45884105 - 45883991
Alignment:
Q  82 tgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttcttccttccaggtcggttaacagcttaacaaggcta 181  Q
    ||||||| |||| || |||||||||||||||| |||||||||||||||| |||||||| || ||||| || |  |||| ||||||| |||||| || ||     
T  45884105 tgaagtgaccaatgacgtgaatttatgggctgaaaaagagacaaatggtcttattaaagaaattctttctccagggtcagttaacaacttaaccagactc 45884006  T
Q  182 atcattgctaatgca 196  Q
    ||  |||||||||||    
T  45884005 atatttgctaatgca 45883991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 51942836 - 51943036
Alignment:
Q  33 atctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtat 132  Q
    ||||||||| |||||||||||| || ||||||||||||||  ||||    ||||||   || ||||||||  |||||| || |||||||||||||||  |    
T  51942836 atctatttgcataattgatttttaaatttgatatggttttttaggctccagaagtgcgtaaggaagtgaacatatgggttgaaaaagagacaaatggcct 51942935  T
Q  133 tattaaacaacttcttccttccagg-tcggttaacagcttaacaaggctaatcattgctaatgcactatacttcaaaggagtgtggaatgataagtttga 231  Q
    ||||||| ||||| |||| |||||| || ||| | |||||||| || || ||| ||||||||||  | ||||| | |||||  |||||||| ||||||||    
T  51942936 tattaaagaacttattcc-tccaggatcagttgatagcttaactagcctcatctttgctaatgcgttgtactttagaggagcatggaatgagaagtttga 51943034  T
Q  232 tg 233  Q
    ||    
T  51943035 tg 51943036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 46473684 - 46473753
Alignment:
Q  82 tgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttcttcct 151  Q
    ||||||| |||| ||||||||  ||||||||| |||||||||||||||| |||||||| || ||||||||    
T  46473684 tgaagtgaccaatgaagtgaacatatgggctgaaaaagagacaaatggtcttattaaagaaattcttcct 46473753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 46526785 - 46526729
Alignment:
Q  92 aaagaagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttctt 148  Q
    |||||||||||||||||||||| |||||||||||||||  |||||| | ||||||||    
T  46526785 aaagaagtgaatttatgggctgaaaaagagacaaatggccttattagagaacttctt 46526729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 46544222 - 46544265
Alignment:
Q  92 aaagaagtgaatttatgggctgcaaaagagacaaatggtattat 135  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  46544222 aaagaagtgaatttatgggctgaaaaagagacaaatggtcttat 46544265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 4581810 - 4581744
Alignment:
Q  64 tatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggt 130  Q
    ||||||||||||||| |  ||||||    ||||||||||||||||||||| ||||||||||||||||    
T  4581810 tatggttttaaaggctaccgaagtgcttcaagaagtgaatttatgggctgaaaaagagacaaatggt 4581744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 4614199 - 4614165
Alignment:
Q  92 aaagaagtgaatttatgggctgcaaaagagacaaa 126  Q
    |||||||||||||||||||||| ||||||||||||    
T  4614199 aaagaagtgaatttatgggctgaaaaagagacaaa 4614165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 45902723 - 45902765
Alignment:
Q  96 aagtgaatttatgggctgcaaaagagacaaatggtattattaa 138  Q
    |||||||||||||||||| |||||||||||||||  |||||||    
T  45902723 aagtgaatttatgggctgaaaaagagacaaatggccttattaa 45902765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 246
Target Start/End: Original strand, 17744877 - 17745027
Alignment:
Q  96 aagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttcttccttccaggtcggttaacagcttaacaaggctaatcattgctaatgc 195  Q
    |||||||||||||||||| |||  ||||||| ||  ||||| || | ||||||||   | | || |||||||||||||| || |||||| ||||||||||    
T  17744877 aagtgaatttatgggctgaaaagaagacaaaagggcttattcaagatcttcttccacacggatcagttaacagcttaaccagcctaatctttgctaatgc 17744976  T
Q  196 actatacttcaaaggagtgtggaatgataagtttgatgcttcaaaaacgaa 246  Q
    |||||||||||||||||| |||||  | ||||||||| |||||||||||||    
T  17744977 actatacttcaaaggagtatggaaacaaaagtttgatacttcaaaaacgaa 17745027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 17708039 - 17708159
Alignment:
Q  93 aagaagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttcttccttccaggtcggttaacagcttaacaaggctaatcattgctaa 192  Q
    ||||||||||||||||||||| ||| |||||||| ||  |||||||| | ||||||||   |||||| ||| |||||||||| || || ||  |||||||    
T  17708039 aagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacacaggtcagttgacagcttaaccagcctcatatttgctaa 17708138  T
Q  193 tgcactatacttcaaaggagt 213  Q
    ||||||||| |||||||||||    
T  17708139 tgcactatatttcaaaggagt 17708159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 219
Target Start/End: Original strand, 16721916 - 16722042
Alignment:
Q  93 aagaagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttcttccttccaggtcggttaacagcttaacaaggctaatcattgctaa 192  Q
    ||||||||||||| ||||||| ||| |||||||| ||  |||||||| | ||||||||  |  | || ||||||||||||||  | || ||| |||||||    
T  16721916 aagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacctggctcagttaacagcttaacccgcctcatctttgctaa 16722015  T
Q  193 tgcactatacttcaaaggagtgtggaa 219  Q
    ||||||||| |||||||||||||||||    
T  16722016 tgcactatatttcaaaggagtgtggaa 16722042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 219
Target Start/End: Original strand, 17698930 - 17699056
Alignment:
Q  93 aagaagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttcttccttccaggtcggttaacagcttaacaaggctaatcattgctaa 192  Q
    ||||||||||||| ||||||| ||| |||||||| ||  |||||||| | ||||||||  |  | || ||||||||||||||  | || ||| |||||||    
T  17698930 aagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacctggctcagttaacagcttaacccgcctcatctttgctaa 17699029  T
Q  193 tgcactatacttcaaaggagtgtggaa 219  Q
    ||||||||| |||||||||||||||||    
T  17699030 tgcactatatttcaaaggagtgtggaa 17699056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 17717862 - 17717989
Alignment:
Q  92 aaagaagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttcttccttccaggtcggttaacagcttaacaaggctaatcattgcta 191  Q
    |||||||||||| ||||||||| ||| |||||||| ||  |||||||| | |||||||   |  | || ||| |||||||||| || |||||  |||| |    
T  17717862 aaagaagtgaatgtatgggctgaaaaggagacaaaagggcttattaaaaatcttcttcaacctggctcagttcacagcttaacgagtctaatatttgcaa 17717961  T
Q  192 atgcactatacttcaaaggagtgtggaa 219  Q
    |||||||||| |||||||||||||||||    
T  17717962 atgcactatatttcaaaggagtgtggaa 17717989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 17735692 - 17735819
Alignment:
Q  92 aaagaagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttcttccttccaggtcggttaacagcttaacaaggctaatcattgcta 191  Q
    |||||||||||||||||||||   || |||||||| ||  |||||||  | ||||||||   | |||| ||| |||||||||| || || ||| |||| |    
T  17735692 aaagaagtgaatttatgggctaataaggagacaaaggggtttattaatgatcttcttccacgcgggtcagttgacagcttaaccagcctcatctttgcga 17735791  T
Q  192 atgcactatacttcaaaggagtgtggaa 219  Q
    |||||||||||||||||||||| |||||    
T  17735792 atgcactatacttcaaaggagtttggaa 17735819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 35162145 - 35162263
Alignment:
Q  33 atctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtat 132  Q
    ||||||||| || | ||||||  || ||||| |||||||||||||| | ||||||| | |||||||||||||||||||||| |||||| ||||||||  |    
T  35162145 atctatttgcattactgatttgtaaatttgacatggttttaaaggctattgaagtgactaaagaagtgaatttatgggctgaaaaagaaacaaatggcct 35162244  T
Q  133 tattaaacaacttcttcct 151  Q
    ||||||| |||||||||||    
T  35162245 tattaaagaacttcttcct 35162263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 35155151 - 35155303
Alignment:
Q  60 ttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttcttccttccag-gt 158  Q
    |||| |||||||| ||||| | ||||||| | |||||||||||||||||||||  |||||||||||||||  |||||||| || || || | || || ||    
T  35155151 ttgacatggttttgaaggctattgaagtgactaaagaagtgaatttatgggctaaaaaagagacaaatggccttattaaaaaagttgttgc-tcaagagt 35155249  T
Q  159 cggttaacagcttaacaaggctaatcattgctaatgcactatacttcaaaggag 212  Q
    |||| |||| |||||| || || ||| ||||||||||||| || || |||||||    
T  35155250 cggtcaacaacttaaccagactcatctttgctaatgcactgtattttaaaggag 35155303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 247
Target Start/End: Original strand, 15555718 - 15555932
Alignment:
Q  33 atctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtat 132  Q
    ||||| ||| |||||| |||||||| |||||||||   ||  ||||   ||||||| |||| ||||| |||| ||||| || ||| |||||||||||  |    
T  15555718 atctacttgcataatttattttgaaatttgatatgaaattttaggctgttgaagtgaccaatgaagtcaattcatgggttgaaaaggagacaaatggcct 15555817  T
Q  133 tattaaacaacttcttccttccaggtcggttaacagcttaacaaggctaatcattgctaatgcactatacttcaaaggagtgtggaatgataagtttgat 232  Q
    |||||||  | || |||   |  ||||||| ||||||||||| || || ||| |||| |||||||| ||||| |||||| | ||| || | |||||||||    
T  15555818 tattaaaggagttattcaaccagggtcggtcaacagcttaaccagactcatctttgcaaatgcactgtactttaaaggactatggtatcagaagtttgat 15555917  T
Q  233 gcttcaaaaacgaaa 247  Q
    ||||| |||||||||    
T  15555918 gcttccaaaacgaaa 15555932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 9693136 - 9692974
Alignment:
Q  33 atctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtat 132  Q
    ||||||||| |||| ||||||| || ||||||||| |||||||||| | ||||||| | ||| |||||||||||||||||| |||||||||| ||||  |    
T  9693136 atctatttgcataactgatttttaaatttgatatg-ttttaaaggctattgaagtgactaaacaagtgaatttatgggctgaaaaagagacatatggcct 9693038  T
Q  133 tattaaacaacttcttccttccag-gtcggttaacagcttaacaaggctaatcattgctaatgca 196  Q
    ||||||| || ||||||| || || ||| ||| |||||||||| || || ||| |||||||||||    
T  9693037 tattaaagaaattcttcc-tcaagcgtcagttgacagcttaaccagactcatctttgctaatgca 9692974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 9676115 - 9675936
Alignment:
Q  33 atctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtat 132  Q
    |||||||||||||| ||||||| || ||||||||  | || ||||| | ||||||| | ||||| |||||||||||||||| |||||| ||| | ||  |    
T  9676115 atctatttgaataactgatttttaaatttgatattttatttaaggctattgaagtgactaaagaggtgaatttatgggctgaaaaagaaacatacggcct 9676016  T
Q  133 tattaaacaacttcttccttccaggtcggttaacagcttaacaaggctaatcattgctaatgcactatacttcaaaggag 212  Q
    ||||||| || ||||||||    ||||||| |||| |||||| || || ||| |||||||||||||||| || |||||||    
T  9676015 tattaaagaaattcttcctgaagggtcggtcaacaacttaaccagactcatctttgctaatgcactatattttaaaggag 9675936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 20358884 - 20358953
Alignment:
Q  82 tgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttcttcct 151  Q
    ||||||| | ||| |||||||||||||| ||| ||||||||||| |||  |||||||| |||||||||||    
T  20358884 tgaagtgacaaaaaaagtgaatttatggtctgaaaaagagacaattggccttattaaagaacttcttcct 20358953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 20169402 - 20169333
Alignment:
Q  82 tgaagtggccaaagaagtgaatttatgggctgcaaaagagacaaatggtattattaaacaacttcttcct 151  Q
    ||||||| | ||| |||||||||||||| | | ||||||||||| |||  |||||||| |||||||||||    
T  20169402 tgaagtgacaaaaaaagtgaatttatggtcggaaaaagagacaattggccttattaaagaacttcttcct 20169333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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