View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_54 (Length: 259)
Name: NF14684_low_54
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 74 - 245
Target Start/End: Complemental strand, 1763472 - 1763298
Alignment:
| Q |
74 |
gttacgatggaatcaatgattcaaaaaacatctaatatctttttaagnnnnnnnnn---gcatcttatattaactctaatgaagggaaagatgagaacaa |
170 |
Q |
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| T |
1763472 |
gttacaatggaatcaatgattcaaaaaacatctaatatctttttaagaaaaaaaaaaaagcatcttatattaactctaatgaagggaaatatgagaaaaa |
1763373 |
T |
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| Q |
171 |
gaattaagagaaatgtggcttctttgatggtgtattggttctagtgagcatatctcaatttgggaagaaaggtgg |
245 |
Q |
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| T |
1763372 |
gaattaagagaaatgtggcttctttgatggtgtattggttctagtgaacatatctcaatttgggaagaaaggtgg |
1763298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 1744522 - 1744621
Alignment:
| Q |
12 |
ttaactcttattttagttatccaaatactcattttacatcctcttattatagggcactcagcgttacgatggaatcaatgattcaaaaaacatctaatat |
111 |
Q |
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| T |
1744522 |
ttaacccttattttagttatccaaacactctttttacaccccctaattatggggcactcggtgttagaatggaatctatgattcaaaaaccatcttatat |
1744621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 1760229 - 1760329
Alignment:
| Q |
11 |
tttaactcttattttagttatccaaatactcattttacatcctcttattatagggcactcagcgttacgatggaatcaatgattcaaaaaacatctaata |
110 |
Q |
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| T |
1760229 |
tttaacccttattttagttatccagatactttttttacaccctcgtattatagggcactcggtgttggaatggaacctatgatccaaaaaccatctgata |
1760328 |
T |
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| Q |
111 |
t |
111 |
Q |
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| T |
1760329 |
t |
1760329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 1724588 - 1724677
Alignment:
| Q |
10 |
ctttaactcttattttagttatccaaatactcattttacatcctcttattatagggcactcagcgttacgatggaatcaatgattcaaaa |
99 |
Q |
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| T |
1724588 |
ctttaacctttattttagttatccaaatagcttttttacatccccttattatcggaaactcggcgttagagtggaatctatgattcaaaa |
1724677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 3167405 - 3167457
Alignment:
| Q |
10 |
ctttaactcttattttagttatccaaatactcattttacatcctcttattata |
62 |
Q |
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| T |
3167405 |
ctttaacccttattttagttatccaaatactctttttacaccctcttattata |
3167457 |
T |
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