View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14684_low_56 (Length: 257)

Name: NF14684_low_56
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14684_low_56
NF14684_low_56
[»] chr2 (11 HSPs)
chr2 (97-241)||(41009705-41009850)
chr2 (1-79)||(41009834-41009912)
chr2 (96-214)||(10498684-10498802)
chr2 (110-180)||(12287678-12287748)
chr2 (96-214)||(16644015-16644132)
chr2 (125-211)||(28235502-28235588)
chr2 (7-71)||(1377709-1377771)
chr2 (96-136)||(37599768-37599808)
chr2 (149-214)||(32033020-32033085)
chr2 (147-240)||(34878608-34878701)
chr2 (147-231)||(7700383-7700466)
[»] chr8 (4 HSPs)
chr8 (96-241)||(31235817-31235962)
chr8 (96-214)||(37044384-37044502)
chr8 (96-214)||(72564-72680)
chr8 (127-214)||(16863269-16863355)
[»] chr3 (11 HSPs)
chr3 (96-214)||(25735164-25735282)
chr3 (142-241)||(4137238-4137337)
chr3 (96-214)||(49907008-49907126)
chr3 (96-203)||(43426788-43426895)
chr3 (149-238)||(24309922-24310011)
chr3 (96-214)||(25203060-25203176)
chr3 (124-214)||(23778281-23778371)
chr3 (21-71)||(12005556-12005606)
chr3 (22-80)||(25374964-25375022)
chr3 (149-234)||(26285796-26285881)
chr3 (149-241)||(38573022-38573114)
[»] chr1 (9 HSPs)
chr1 (96-210)||(10160161-10160275)
chr1 (141-241)||(45867624-45867724)
chr1 (101-241)||(14230075-14230215)
chr1 (96-211)||(31860676-31860792)
chr1 (96-160)||(44942588-44942652)
chr1 (96-214)||(9367648-9367771)
chr1 (169-219)||(13694311-13694361)
chr1 (112-160)||(47508918-47508966)
chr1 (168-238)||(8065045-8065115)
[»] chr6 (5 HSPs)
chr6 (99-236)||(11380003-11380134)
chr6 (96-214)||(67191-67309)
chr6 (168-235)||(14430012-14430079)
chr6 (149-214)||(6689251-6689316)
chr6 (96-200)||(5161171-5161275)
[»] chr5 (13 HSPs)
chr5 (96-214)||(18475959-18476077)
chr5 (95-214)||(30335486-30335605)
chr5 (96-214)||(41047387-41047505)
chr5 (95-224)||(30485396-30485525)
chr5 (96-207)||(22229411-22229522)
chr5 (96-207)||(32868325-32868432)
chr5 (96-194)||(17109003-17109102)
chr5 (110-214)||(29456543-29456647)
chr5 (28-79)||(32868291-32868342)
chr5 (149-239)||(7607231-7607321)
chr5 (99-160)||(31280145-31280206)
chr5 (149-214)||(36744983-36745048)
chr5 (140-214)||(11079887-11079961)
[»] chr4 (8 HSPs)
chr4 (96-214)||(13216490-13216608)
chr4 (96-214)||(20526596-20526714)
chr4 (96-214)||(45538154-45538273)
chr4 (120-214)||(53840462-53840556)
chr4 (96-216)||(24571836-24571956)
chr4 (96-214)||(35765212-35765329)
chr4 (110-214)||(14272454-14272558)
chr4 (98-160)||(56341147-56341209)
[»] chr7 (5 HSPs)
chr7 (168-240)||(18114617-18114689)
chr7 (110-214)||(3855385-3855489)
chr7 (96-214)||(5467395-5467513)
chr7 (150-214)||(33941631-33941695)
chr7 (149-214)||(30074623-30074688)
[»] scaffold0684 (1 HSPs)
scaffold0684 (124-233)||(4126-4235)
[»] scaffold0163 (1 HSPs)
scaffold0163 (124-233)||(3883-3992)
[»] scaffold0051 (1 HSPs)
scaffold0051 (98-202)||(13319-13424)
[»] scaffold0042 (1 HSPs)
scaffold0042 (96-153)||(93916-93973)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 41009850 - 41009705
Alignment:
Q  97 atattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctattttt-catttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41009850 atattaaaagtaattgtagcaatcaaaattacaaagaaaatgctctattttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 41009751  T
Q  196 gaacatctctttctatatacattataagacaatcatttaaccattg 241  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  41009750 gaacatctctttctatatacattataagacgatcatttaaccattg 41009705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 41009912 - 41009834
Alignment:
Q  1 atcggagagacacaattttcttttgttaaataattatgtaaaactaaatttaataagatattatattaaaagtaattgt 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  41009912 atcggagagacacaattttcttttgttaaataattatgtaaaactaaatttaataagaaataatattaaaagtaattgt 41009834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 10498802 - 10498684
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| || |||||||||  ||||||| |||||||||  | ||||||| ||||||||||| |||   ||||||| |||||| || ||||||||||    
T  10498802 tatattaaaaatagttgtagcaacgaaaattataaagaaaataatatattttttatttgttgaaaatgaactaaaattatatcattactaattgttctaa 10498703  T
Q  196 gaacatctctttctatata 214  Q
    |||||||||||||||||||    
T  10498702 gaacatctctttctatata 10498684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 12287748 - 12287678
Alignment:
Q  110 ttgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcat 180  Q
    |||||||||  |||||||||||||||||| | ||||||||||||||||||| ||||  |||||||||||||    
T  12287748 ttgtagcaactaaaattacaaagaaaatgctatatttttcatttgttgaaaatgagctaaaattacatcat 12287678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 16644132 - 16644015
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    ||||||| || || ||||||||||||||||||||||||||||  |||||||   ||||||| ||| | | | ||||||| ||||||  | ||| ||||||    
T  16644132 tatattagaaatagttgtagcaatcaaaattacaaagaaaat-atctatttcctatttgttaaaaataaattaaaattatatcattattaatttttctaa 16644034  T
Q  196 gaacatctctttctatata 214  Q
    |||||||||||| ||||||    
T  16644033 gaacatctctttttatata 16644015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 28235588 - 28235502
Alignment:
Q  125 ttacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctat 211  Q
    |||||||||||||  | ||| || ||||| |||||| | ||| ||||| ||||||||| | |||||||||||||||||| |||||||    
T  28235588 ttacaaagaaaatagtttatcttccatttattgaaaattagttaaaataacatcatttataattgttctaagaacatctttttctat 28235502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 1377771 - 1377709
Alignment:
Q  7 gagacacaattttcttttgttaaataattatgtaaaactaaatttaataagatattatattaaaa 71  Q
    |||||||||||||  ||||| |||||||||  |||||||||||||||||| | ||||||||||||    
T  1377771 gagacacaatttt--tttgtcaaataattaaataaaactaaatttaataaaaaattatattaaaa 1377709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 37599808 - 37599768
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaa 136  Q
    |||||||||| |||||||||||| |||||||||||||||||    
T  37599808 tatattaaaaataattgtagcaaccaaaattacaaagaaaa 37599768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 32033020 - 32033085
Alignment:
Q  149 catttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatata 214  Q
    |||||||| ||| ||||| ||||| |||||| | || ||||||  |||||||||||||||||||||    
T  32033020 catttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctctttctatata 32033085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 34878701 - 34878608
Alignment:
Q  147 ttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacaatcatttaaccatt 240  Q
    |||||||||||||| ||||| ||||  || |||||  | ||||||  |||||||| | ||||||||||  ||| ||||| ||||||||||||||    
T  34878701 ttcatttgttgaaaatgagttaaaaagacgtcattgttaattgttaaaagaacatatatttctatataagttacaagacgatcatttaaccatt 34878608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 7700383 - 7700466
Alignment:
Q  147 ttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacaatcat 231  Q
    ||||| |||||||| ||||  ||||| |||||||| || ||||||  |||||||| ||||||||||||  ||| |||||||||||    
T  7700383 ttcatatgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacat-tctttctatataagttacaagacaatcat 7700466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 241
Target Start/End: Complemental strand, 31235962 - 31235817
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| || ||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||  |||||||||||||| || ||||||  ||    
T  31235962 tatattaaaaatagttgtagcaaccaaaattacaaagaaaatgctctattttccatttgttgaaaatgagctaaaattacatcattactaattgtttcaa 31235863  T
Q  196 gaacatctctttctatatacattataagacaatcatttaaccattg 241  Q
    |||||||||| ||||| ||| ||| ||||| ||||||||| |||||    
T  31235862 gaacatctctctctatgtacgttacaagacgatcatttaaacattg 31235817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 37044502 - 37044384
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| || ||||||||| |||||  ||||| |||||  ||||||||||||||||||||| |||   || ||||||||||| || | ||||||||    
T  37044502 tatattaaaaatagttgtagcaaccaaaaccacaaataaaataatctatttttcatttgttgaaaatgaactaatattacatcattactaactgttctaa 37044403  T
Q  196 gaacatctctttctatata 214  Q
    ||||||||||||| |||||    
T  37044402 gaacatctctttcaatata 37044384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 72564 - 72680
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| || ||||||||| |||||||||||||  |||  |||| ||| |||||||||||| |||   ||||| | |||||| || ||| ||||||    
T  72564 tatattaaaaatagttgtagcaaccaaaattacaaag--aataatctactttccatttgttgaaaatgaagtaaaatcatatcattactaatttttctaa 72661  T
Q  196 gaacatctctttctatata 214  Q
    ||| |||||||||||||||    
T  72662 gaatatctctttctatata 72680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 16863269 - 16863355
Alignment:
Q  127 acaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatata 214  Q
    |||||||||||  | |||||| |||||||||||| ||| | |||||||||||||| || ||||||| || || || ||||||||||||    
T  16863269 acaaagaaaataatatattttccatttgttgaaaatgaattaaaattacatcattgctaattgttccaataa-atatctttctatata 16863355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 25735164 - 25735282
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| || ||||||||| ||||||||||||||||||  |||||||||| |||||||||| ||| | ||||||| |||||| || ||| ||| ||    
T  25735164 tatattaaaaatagttgtagcaaccaaaattacaaagaaaataatctatttttcgtttgttgaaaatgaattaaaattatatcattactaattattcaaa 25735263  T
Q  196 gaacatctctttctatata 214  Q
    |||||||||||||||||||    
T  25735264 gaacatctctttctatata 25735282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 241
Target Start/End: Complemental strand, 4137337 - 4137238
Alignment:
Q  142 tatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacaatcatttaaccattg 241  Q
    |||||| |||||||||||| ||||| ||||| ||||| || || ||||||||||||||||||||| |||||||  ||| ||||| |||||||||| ||||    
T  4137337 tattttccatttgttgaaaatgagttaaaatgacatcgttactaattgttctaagaacatctcttactatatatgttacaagacgatcatttaactattg 4137238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 49907126 - 49907008
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    ||||| |||| || |||||||||  ||||||||||| |||||  | || ||||||||||| |||| |||   ||||||| |||||| || ||||||||||    
T  49907126 tatataaaaaatagttgtagcaactaaaattacaaataaaataatgtacttttcatttgtagaaaatgaaataaaattatatcattactaattgttctaa 49907027  T
Q  196 gaacatctctttctatata 214  Q
    |||||||||||||||||||    
T  49907026 gaacatctctttctatata 49907008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 43426788 - 43426895
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| || |||||| || ||||||||||||||||||  |||||||| ||||||  |||| |||   ||||||| |||||| || ||||||||||    
T  43426788 tatattaaaaatagttgtagtaaccaaaattacaaagaaaataatctattttccatttgaagaaaatgaactaaaattatatcattgctaattgttctaa 43426887  T
Q  196 gaacatct 203  Q
    ||||||||    
T  43426888 gaacatct 43426895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 24309922 - 24310011
Alignment:
Q  149 catttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacaatcatttaacca 238  Q
    |||||||||||| | ||||||||| ||||||||  | ||||||  |||||||||||||||||| ||  ||| |||||| |||||||||||    
T  24309922 catttgttgaaaataagtcaaaatcacatcattgttaattgttaaaagaacatctctttctatgtaagttacaagacattcatttaacca 24310011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 25203176 - 25203060
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    ||||||| || || |||||| || |||||||||||||||  | || | |||||  |||||||||| |||   ||||||| |||||| || ||| ||||||    
T  25203176 tatattagaaatagttgtagtaaccaaaattacaaagaatttttttttttttt--tttgttgaaaatgaactaaaattatatcattactaattattctaa 25203079  T
Q  196 gaacatctctttctatata 214  Q
    |||||||||||||||||||    
T  25203078 gaacatctctttctatata 25203060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 214
Target Start/End: Original strand, 23778281 - 23778371
Alignment:
Q  124 attacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatata 214  Q
    |||||||  |||||| ||| || | |||||||||||| ||||  ||||| |||||||| || ||||||  |||||||||||||||||||||    
T  23778281 attacaataaaaatggtctcttatccatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctttctatata 23778371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 12005606 - 12005556
Alignment:
Q  21 ttttgttaaataattatgtaaaactaaatttaataagatattatattaaaa 71  Q
    |||||| |||||||||  |||||||||||||||||||| ||| ||||||||    
T  12005606 ttttgtcaaataattaaataaaactaaatttaataagaaattgtattaaaa 12005556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 25374964 - 25375022
Alignment:
Q  22 tttgttaaataattatgtaaaactaaatttaataagatattatattaaaagtaattgtt 80  Q
    ||||||||||||||| |||| |||||||| |||||||  ||||||||||| || |||||    
T  25374964 tttgttaaataattaagtaatactaaattcaataagaagttatattaaaaatagttgtt 25375022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 26285881 - 26285796
Alignment:
Q  149 catttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacaatcattta 234  Q
    |||||||||||| ||||| ||||  |||||||| || ||||||  |||||||| |||||||| |||  ||| |||||| |||||||    
T  26285881 catttgttgaaaatgagttaaaaggacatcattgctaattgttaaaagaacatatctttctacatatgttacaagacagtcattta 26285796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 38573022 - 38573114
Alignment:
Q  149 catttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacaatcatttaaccattg 241  Q
    |||||||||||| ||||  ||||| ||| |||| || ||||||   ||||||||||||||||||||  ||| | ||| |||||||| ||||||    
T  38573022 catttgttgaaaatgagctaaaatgacagcattgctaattgttaatagaacatctctttctatataagttacacgacgatcatttagccattg 38573114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 10160275 - 10160161
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| || |||||||||| |||||||||| ||||||| |||||||||| |||||||||| ||| | ||||||| |||||| || ||| ||||||    
T  10160275 tatattaaaaatagttgtagcaattaaaattacaatgaaaatgatctatttttcgtttgttgaaaatgaattaaaattatatcattactaattattctaa 10160176  T
Q  196 gaacatctctttcta 210  Q
    |||||||||||||||    
T  10160175 gaacatctctttcta 10160161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 45867624 - 45867724
Alignment:
Q  141 ctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacaatcatttaaccatt 240  Q
    |||||||||||||||||| | ||||| |||||| |||| || || |||||||||||||||||| ||| ||||||||||| ||||| ||| ||||| ||||    
T  45867624 ctatttttcatttgttgagaatgagttaaaattgcatcgttactaattgttctaagaacatctatttttatatacattacaagacgatcgtttaaacatt 45867723  T
Q  241 g 241  Q
    |    
T  45867724 g 45867724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 14230215 - 14230075
Alignment:
Q  101 taaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaaca 200  Q
    ||||| || ||||||||| |||||||||||||||||   |||| | | |||||||||||| ||||  ||||||| || ||| || | |||| ||||||||    
T  14230215 taaaaatagttgtagcaaccaaaattacaaagaaaaaactctagtatccatttgttgaaaatgagctaaaattatattattactaactgttttaagaaca 14230116  T
Q  201 tctctttctatatacattataagacaatcatttaaccattg 241  Q
    | ||||||||||||  ||| ||||  ||||||||| |||||    
T  14230115 tttctttctatatatcttacaagatgatcatttaatcattg 14230075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 31860676 - 31860792
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgt-tctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttcta 194  Q
    |||||||| | || ||||||||| |||||||||||| ||||    ||||||||| ||||||||||| |||   ||||||| |||||| ||  ||||||||    
T  31860676 tatattaagaatagttgtagcaaacaaaattacaaaaaaaaaaaatctattttttatttgttgaaaatgaactaaaattatatcattactatttgttcta 31860775  T
Q  195 agaacatctctttctat 211  Q
    |||||||||||||||||    
T  31860776 agaacatctctttctat 31860792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 44942652 - 44942588
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaa 160  Q
    ||||||||||||  ||||||||| ||||||||||||| ||||| |||||||| ||||||||||||    
T  44942652 tatattaaaagtggttgtagcaaccaaaattacaaagcaaatgctctattttccatttgttgaaa 44942588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 9367771 - 9367648
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaa-----tgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgt 190  Q
    ||||||||||||| |||||||||  ||||||||||| ||||     || | |||||| |||||||||||| ||||  ||||||| || ||| || |||||    
T  9367771 tatattaaaagtagttgtagcaactaaaattacaaaaaaaaaaaaatgctatattttccatttgttgaaaatgagctaaaattagattattactgattgt 9367672  T
Q  191 tctaagaacatctctttctatata 214  Q
    |  |||||||||| ||||||||||    
T  9367671 ttgaagaacatctatttctatata 9367648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 13694361 - 13694311
Alignment:
Q  169 aaattacatcatttcttattgttctaagaacatctctttctatatacatta 219  Q
    |||||| |||||| || ||||||||||||||||||||||||||||| ||||    
T  13694361 aaattatatcattactaattgttctaagaacatctctttctatatagatta 13694311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 47508918 - 47508966
Alignment:
Q  112 gtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaa 160  Q
    ||||||| ||||||||| ||||||||| |||||||| ||||||||||||    
T  47508918 gtagcaaccaaaattactaagaaaatgctctattttccatttgttgaaa 47508966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 8065045 - 8065115
Alignment:
Q  168 aaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacaatcatttaacca 238  Q
    ||||| |||||||| || ||||||  |||||||||||||| ||||||  |||||||||  |||||||||||    
T  8065045 aaaatgacatcattgctaattgttaaaagaacatctctttttatataagttataagacggtcatttaacca 8065115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 11380134 - 11380003
Alignment:
Q  99 attaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaa 198  Q
    |||||||||  ||||||||| ||||||||||||| ||||| ||||||||||||||||||||| ||      |||||||||||| || |||||| ||||||    
T  11380134 attaaaagtggttgtagcaaccaaaattacaaagcaaatgctctatttttcatttgttgaaaatg------aattacatcattactaattgttttaagaa 11380041  T
Q  199 catctctttctatatacattataagacaatcatttaac 236  Q
    |||| ||||| |||||  ||| ||||| ||||||||||    
T  11380040 catcactttcaatatatgttacaagacgatcatttaac 11380003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 67309 - 67191
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| || ||| ||||| ||||||||||||||||||  ||||||||| |||||||||||  ||   ||||||| || ||| || ||||||||||    
T  67309 tatattaaaaatagttgaagcaaccaaaattacaaagaaaattatctattttttatttgttgaaaacgaactaaaattatattattactaattgttctaa 67210  T
Q  196 gaacatctctttctatata 214  Q
    |||||||| | ||||||||    
T  67209 gaacatctatgtctatata 67191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 14430079 - 14430012
Alignment:
Q  168 aaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacaatcatttaa 235  Q
    |||||||||||||| || |||||| ||||||||||||||||||||||| ||| ||||  |||||||||    
T  14430079 aaaattacatcattactaattgttttaagaacatctctttctatatacgttacaagatgatcatttaa 14430012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 6689251 - 6689316
Alignment:
Q  149 catttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatata 214  Q
    ||||| |||||||||||  ||||| |||||||| || ||||||  |||| ||||||||||||||||    
T  6689251 catttattgaaattgagctaaaatgacatcattgctaattgttaaaagatcatctctttctatata 6689316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 5161275 - 5161171
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| |  |||| ||||  |||||||||||||||||  | |||||| |||||||||||| | |   ||||||| ||||||  | ||||||||||    
T  5161275 tatattaaaaatggttgtggcaactaaaattacaaagaaaataatttattttccatttgttgaaaataaactaaaattatatcattattaattgttctaa 5161176  T
Q  196 gaaca 200  Q
    |||||    
T  5161175 gaaca 5161171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 18476077 - 18475959
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| || |||||| ||  ||||||||||| |||||  ||||||||||||||||||||| |||   ||||||| || ||| || ||||||||||    
T  18476077 tatattaaaaatagttgtagtaacaaaaattacaaataaaataatctatttttcatttgttgaaaatgaactaaaattatataattactaattgttctaa 18475978  T
Q  196 gaacatctctttctatata 214  Q
    |||||||||||||||||||    
T  18475977 gaacatctctttctatata 18475959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 30335605 - 30335486
Alignment:
Q  95 atatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttcta 194  Q
    ||||||||||| || ||||||||||||||||||||||||||||  ||||||||| ||||||||||  | |   ||||||| || ||| || |||||||||    
T  30335605 atatattaaaaatagttgtagcaatcaaaattacaaagaaaataatctattttttatttgttgaatataaactaaaattatataattactaattgttcta 30335506  T
Q  195 agaacatctctttctatata 214  Q
    |||| ||| |||||||||||    
T  30335505 agaatatccctttctatata 30335486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 41047387 - 41047505
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||| ||| || ||||||||| |||||| |||||||||||  | || ||||||||| |||||| ||| | ||||||||||||||  | ||||||||||    
T  41047387 tatattgaaaatagttgtagcaaccaaaataacaaagaaaataatttaattttcatttattgaaaatgaattaaaattacatcattagtaattgttctaa 41047486  T
Q  196 gaacatctctttctatata 214  Q
    |||||||| ||||||||||    
T  41047487 gaacatctttttctatata 41047505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 30485396 - 30485525
Alignment:
Q  95 atatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttcta 194  Q
    ||||||||||| || |||| |||| |||||||||||||||||   ||||||||||||||||||||  | |   ||||||| || ||| || |||||||||    
T  30485396 atatattaaaaatagttgttgcaaccaaaattacaaagaaaagtatctatttttcatttgttgaatataaactaaaattatataattactaattgttcta 30485495  T
Q  195 agaacatctctttctatatacattataaga 224  Q
    |||||||| ||||||||||| |||| ||||    
T  30485496 agaacatccctttctatatagattacaaga 30485525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 22229522 - 22229411
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| |||||||||||| |||||||| |||||||||  ||| |||| |||||||||||| | |   ||||||| || ||| || ||||||||||    
T  22229522 tatattaaaaataattgtagcaaccaaaattataaagaaaataatctcttttccatttgttgaaaataaactaaaattatattattactaattgttctaa 22229423  T
Q  196 gaacatctcttt 207  Q
    ||||||||||||    
T  22229422 gaacatctcttt 22229411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 32868325 - 32868432
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| |||||||||||| ||||||||||||   ||| || |||||| |||||||| ||| ||| | ||||||||||||||  | ||||||||||    
T  32868325 tatattaaaaataattgtagcaaccaaaattacaaa---aatattatatttt-catttgttaaaaatgaattaaaattacatcattaataattgttctaa 32868420  T
Q  196 gaacatctcttt 207  Q
    ||||||||||||    
T  32868421 gaacatctcttt 32868432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 17109003 - 17109102
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaa-tgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttcta 194  Q
    |||||||||| || ||||||||| |||||||||||| |||| |  ||||||||||||||||||||| ||||  |||||| ||||||| || |||||||||    
T  17109003 tatattaaaaatagttgtagcaaccaaaattacaaaaaaaaatactctatttttcatttgttgaaaatgagctaaaattgcatcattactaattgttcta 17109102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 214
Target Start/End: Complemental strand, 29456647 - 29456543
Alignment:
Q  110 ttgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttct 209  Q
    ||||||||||||||||||||||||||||  |||||||| |||||||| ||| |||   |||| || ||| || || ||| || ||||||||||| |||||    
T  29456647 ttgtagcaatcaaaattacaaagaaaataatctattttccatttgttaaaaatgaactaaaactatatcgttactaattattttaagaacatctatttct 29456548  T
Q  210 atata 214  Q
    |||||    
T  29456547 atata 29456543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 32868291 - 32868342
Alignment:
Q  28 aaataattatgtaaaactaaatttaataagatattatattaaaagtaattgt 79  Q
    |||||||||  |||||||||||||||||||| |||||||||||| |||||||    
T  32868291 aaataattaaataaaactaaatttaataagaaattatattaaaaataattgt 32868342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 7607321 - 7607231
Alignment:
Q  149 catttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacaatcatttaaccat 239  Q
    |||||||||||| ||||  ||||| ||||||||  | ||||||   ||||||||||||||||||||  ||| |||||| ||||||||||||    
T  7607321 catttgttgaaaatgagctaaaatgacatcattgttaattgttaatagaacatctctttctatataagttacaagacactcatttaaccat 7607231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 31280145 - 31280206
Alignment:
Q  99 attaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaa 160  Q
    ||||||| || ||||||||| | ||||||| ||||||||| |||||||| ||||||||||||    
T  31280145 attaaaaatagttgtagcaaacgaaattacgaagaaaatgctctattttccatttgttgaaa 31280206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 36744983 - 36745048
Alignment:
Q  149 catttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatata 214  Q
    |||||||||||| ||||  ||||| |||||||| || ||||||  |||||||||||||||||||||    
T  36744983 catttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctttctatata 36745048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 11079961 - 11079887
Alignment:
Q  140 tctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatata 214  Q
    |||| |||||||||||||||| |||   ||||| | ||||||  | |||||||||||||||||||||| ||||||    
T  11079961 tctacttttcatttgttgaaaatgaaataaaatcatatcattattaattgttctaagaacatctctttttatata 11079887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 13216490 - 13216608
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| || ||||||||| |||||||||  |||||||  |||| ||| |||||||||||| |||  |||||| | |||||| || ||||||||||    
T  13216490 tatattaaaaatagttgtagcaaccaaaattacttagaaaataatctactttccatttgttgaaaatgaaacaaaatcatatcattactaattgttctaa 13216589  T
Q  196 gaacatctctttctatata 214  Q
    |||||||||||||||||||    
T  13216590 gaacatctctttctatata 13216608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 20526714 - 20526596
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| |  ||||||||| ||||||||||||||||||  ||||||||||||||||| ||| |||   ||||||| |||||| || ||||||||||    
T  20526714 tatattaaaaatggttgtagcaaccaaaattacaaagaaaataatctatttttcatttgttaaaaatgaactaaaattatatcattactaattgttctaa 20526615  T
Q  196 gaacatctctttctatata 214  Q
     || ||||| |||||||||    
T  20526614 aaatatctcattctatata 20526596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 45538154 - 45538273
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgt-tctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttcta 194  Q
    |||||||||| || ||||||||| ||||||| |||||||||    | |||||| |||||||||||| |||   ||||||| |||||| || |||||||||    
T  45538154 tatattaaaaatagttgtagcaaccaaaatttcaaagaaaacaaatatattttacatttgttgaaaatgaactaaaattatatcattactgattgttcta 45538253  T
Q  195 agaacatctctttctatata 214  Q
    |||||||||| |||||||||    
T  45538254 agaacatctccttctatata 45538273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 53840556 - 53840462
Alignment:
Q  120 caaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatata 214  Q
    ||||||||||||||||||  ||||||||  ||||||||||| |||   ||||||| |||||| || |||||| ||||||||||||||| ||||||    
T  53840556 caaaattacaaagaaaataatctattttctatttgttgaaaatgaactaaaattatatcattactaattgttttaagaacatctctttatatata 53840462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 24571836 - 24571956
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| ||  |||||||||||||||||||||||||||  |||| ||| |||||||| ||| |||   ||||| | ||||||  | |||||| |||    
T  24571836 tatattaaaaatagctgtagcaatcaaaattacaaagaaaataatctactttccatttgtttaaaatgaaataaaatcatatcattattaattgttttaa 24571935  T
Q  196 gaacatctctttctatataca 216  Q
    ||| |||||||| ||||||||    
T  24571936 gaatatctctttatatataca 24571956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 35765212 - 35765329
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| || ||||||||| ||||||||||||||||||   ||| ||| ||||| |||||| |||   ||||| | |||||| || ||||||||||    
T  35765212 tatattaaaa-tagttgtagcaaccaaaattacaaagaaaataaactactttccatttattgaaaatgaactaaaatcatatcattactaattgttctaa 35765310  T
Q  196 gaacatctctttctatata 214  Q
    |||||||||| ||| ||||    
T  35765311 gaacatctctctctgtata 35765329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 214
Target Start/End: Complemental strand, 14272558 - 14272454
Alignment:
Q  110 ttgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttct 209  Q
    ||||||||| |||||||||||| |||||  |||||||| |||||||||||| |||   | ||||| |||| |  | |||||| |||||||| ||||||||    
T  14272558 ttgtagcaaccaaaattacaaataaaataatctattttgcatttgttgaaaatgaactagaattaaatcaatagtaattgttataagaacaactctttct 14272459  T
Q  210 atata 214  Q
    |||||    
T  14272458 atata 14272454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 56341147 - 56341209
Alignment:
Q  98 tattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaa 160  Q
    |||||||| || |||||||||  |||||||||||| ||||  | |||||||||||||||||||    
T  56341147 tattaaaaatagttgtagcaactaaaattacaaaggaaataatatatttttcatttgttgaaa 56341209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 18114689 - 18114617
Alignment:
Q  168 aaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacaatcatttaaccatt 240  Q
    ||||||||||||||  | |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  18114689 aaaattacatcattaataattgttctaagaacatttctttctatatacattacaagacgatcatttaaccatt 18114617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 214
Target Start/End: Original strand, 3855385 - 3855489
Alignment:
Q  110 ttgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttct 209  Q
    ||||||||| |||||||| |||||||||  | ||||||||||||| ||||| |||   ||||||| |||||| || ||||| ||||||||||||||||||    
T  3855385 ttgtagcaaccaaaattataaagaaaataatatatttttcatttgctgaaaatgaactaaaattatatcattactaattgtcctaagaacatctctttct 3855484  T
Q  210 atata 214  Q
     ||||    
T  3855485 gtata 3855489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 5467395 - 5467513
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaa 195  Q
    |||||||||| || || || ||| ||||||||||||||||||  ||||||||||||||||||||| |||   ||||||| |||||| ||  |||||  ||    
T  5467395 tatattaaaaatagttataacaaccaaaattacaaagaaaataatctatttttcatttgttgaaaatgaagtaaaattatatcattactatttgtttaaa 5467494  T
Q  196 gaacatctctttctatata 214  Q
     ||| ||||||||||||||    
T  5467495 aaacgtctctttctatata 5467513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 33941695 - 33941631
Alignment:
Q  150 atttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatata 214  Q
    ||||||||||| ||||| ||||| |||||||| || ||||||  |||||||| ||||||||||||    
T  33941695 atttgttgaaaatgagttaaaataacatcattgctaattgttaaaagaacatttctttctatata 33941631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 30074688 - 30074623
Alignment:
Q  149 catttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatata 214  Q
    |||||||||||| | ||| ||||| ||||||||  | ||||||  |||||||||||||||||||||    
T  30074688 catttgttgaaaataagttaaaatgacatcattgttaattgttaaaagaacatctctttctatata 30074623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 4126 - 4235
Alignment:
Q  124 attacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataag 223  Q
    ||||||||| ||| | ||||||||  ||| ||||||| ||||| |||||||||| ||| || ||| || ||||||||||||||||||||||  ||| |||    
T  4126 attacaaagcaaaagatctattttcaattagttgaaaatgagttaaaattacataattactaattattttaagaacatctctttctatatatgttacaag 4225  T
Q  224 acaatcattt 233  Q
    ||||||||||    
T  4226 acaatcattt 4235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 3992 - 3883
Alignment:
Q  124 attacaaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataag 223  Q
    ||||||||| ||| | ||||||||  ||| ||||||| ||||| |||||||||| ||| || ||| || ||||||||||||||||||||||  ||| |||    
T  3992 attacaaagcaaaagatctattttcaattagttgaaaatgagttaaaattacataattactaattattttaagaacatctctttctatatatgttacaag 3893  T
Q  224 acaatcattt 233  Q
    ||||||||||    
T  3892 acaatcattt 3883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 13319 - 13424
Alignment:
Q  98 tattaaaagtaattgtagcaatcaaaattac-aaagaaaatgttctatttttcatttgttgaaattgagtcaaaattacatcatttcttattgttctaag 196  Q
    |||||||| || || |||||| ||||||||| ||| ||||   |||| |||||||||||||||| ||||  ||||||||||| || || |||||||||||    
T  13319 tattaaaaatagttttagcaaccaaaattaccaaaaaaaaaactctaattttcatttgttgaaaatgagctaaaattacatcgttactaattgttctaag 13418  T
Q  197 aacatc 202  Q
    ||||||    
T  13419 aacatc 13424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 93916 - 93973
Alignment:
Q  96 tatattaaaagtaattgtagcaatcaaaattacaaagaaaatgttctatttttcattt 153  Q
    |||||||||| || ||||||||| ||||| |||||||||||||||||||||| |||||    
T  93916 tatattaaaaatagttgtagcaaccaaaactacaaagaaaatgttctattttccattt 93973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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