View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_60 (Length: 245)
Name: NF14684_low_60
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 38419565 - 38419440
Alignment:
| Q |
118 |
tatctgagtatttgagacaaggcacttgatcgccttgcatcaggcatacttcaccgtatctgagtatttgagagacaatggcgtactttgtctcaaaaac |
217 |
Q |
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| T |
38419565 |
tatctgagtatttgagacaaggcacttgatcgccttgcatcaggcatacttcaccgtatctgagtatttgagagacaatggcgtactttgtctcaaaaac |
38419466 |
T |
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| Q |
218 |
ctaattaatttcaaaataattcatct |
243 |
Q |
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| T |
38419465 |
ctaattaatttcaaaataattcatct |
38419440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 38420268 - 38420161
Alignment:
| Q |
14 |
agaataacatatgacatgtaactttttggtgtttcggtctcctatatgaaaatataatttgctaatctactattgtttcatcatcctccttggcagacaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38420268 |
agaataacatatgacatgtaactttttggtgttttggtctcctatatgaaaatataatttgctaatctactattgtttcatcatcctccttggcagacaa |
38420169 |
T |
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| Q |
114 |
accatatc |
121 |
Q |
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|||||||| |
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| T |
38420168 |
accatatc |
38420161 |
T |
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