View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_61 (Length: 242)
Name: NF14684_low_61
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_61 |
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| [»] chr1 (4 HSPs) |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 2311442 - 2311207
Alignment:
| Q |
7 |
actccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctgatggatgggtacaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2311442 |
actccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctgatggatgggtacta |
2311343 |
T |
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| Q |
107 |
agaaaacctgtaaacataaaatcattgttatgtccgcttaactttcccagctcctcgtagactttaggtgccacccgaggatcatagccagctgctgcca |
206 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2311342 |
agaaaacctgtaaacataaaatcattgttatgtctgcttaactttcccagctcctcgtagactttaggtgccacccgaggatcatagccagctgctgcca |
2311243 |
T |
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| Q |
207 |
ttagttgaagcccgatgtaatcagcttcaaattcaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2311242 |
ttagttgaagcccgatgtaatcagcttcaaattcaa |
2311207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 2927828 - 2928063
Alignment:
| Q |
7 |
actccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctgatggatgggtacaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
2927828 |
actccttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctgatgaatgggtacta |
2927927 |
T |
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| Q |
107 |
agaaaacctgtaaacataaaatcattgttatgtccgcttaactttcccagctcctcgtagactttaggtgccacccgaggatcatagccagctgctgcca |
206 |
Q |
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| T |
2927928 |
agaaaacctgtaaacataaaatcattgttatgtccgcttaactttcccagctcctcgtagactttaggagccacccgaggatcatagccagctgctgcca |
2928027 |
T |
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| Q |
207 |
ttagttgaagcccgatgtaatcagcttcaaattcaa |
242 |
Q |
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| T |
2928028 |
ttagtagaagcccgatataatcagcttcaaattcaa |
2928063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 10173717 - 10173773
Alignment:
| Q |
185 |
ggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattca |
241 |
Q |
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| T |
10173717 |
ggatcatagccagcggctgccattagtagaagcccaatgtaatccgcttcaaattca |
10173773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 10173547 - 10173632
Alignment:
| Q |
15 |
ctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctgatggatgg |
100 |
Q |
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| T |
10173547 |
ctcttgcatctttatacaaaataagagcttcctgcattatctcaggtcgagccactgctttcgctctttctttacttgatggatgg |
10173632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 29088853 - 29088921
Alignment:
| Q |
174 |
gtgccacccgaggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattcaa |
242 |
Q |
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| T |
29088853 |
gtgccagccgaggatcatagccagctgatgccattagtagaagcccaatgtaatcaacttcaaattcaa |
29088921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 1175509 - 1175452
Alignment:
| Q |
185 |
ggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattcaa |
242 |
Q |
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| T |
1175509 |
ggatcatagccagctgctgccatcagtagaagcccaatgtaatcagcttcatattcaa |
1175452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 1237932 - 1237989
Alignment:
| Q |
185 |
ggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattcaa |
242 |
Q |
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| T |
1237932 |
ggatcatagccaactgctgccattagtagaagcccaatgtaatccgcttcaaattcaa |
1237989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 29088702 - 29088783
Alignment:
| Q |
11 |
cttgctcttgcatcattatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctg |
92 |
Q |
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| T |
29088702 |
cttgttcttgcatcattatacaaagtaagagcttcttccattatcttaggccgaagcaacgctttgactctttctcttcctg |
29088783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 23906457 - 23906529
Alignment:
| Q |
164 |
tagactttaggtgccacccgaggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaa |
236 |
Q |
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| T |
23906457 |
tagactttaggtgccacccggggatcatagccagccgatgcaagtaatagaagccgaatgtaatcagcttcaa |
23906529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 1237769 - 1237847
Alignment:
| Q |
22 |
atcattatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctgatggatgg |
100 |
Q |
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| T |
1237769 |
atcattatataaaagaagagcttccttcattatctctggtcgagccaccgctttggctctttctctacctgatggatgg |
1237847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 907876 - 907789
Alignment:
| Q |
149 |
tttcccagctcctcgtagactttaggtgccacccgaggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaa |
236 |
Q |
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||||||| || ||||||||||||||||||||| || || ||||| || || | ||||| || | |||| || |||||||||||||||| |
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| T |
907876 |
tttcccaacttctcgtagactttaggtgccacacgtgggtcataaccggcagatgccactaatagaagaccaatgtaatcagcttcaa |
907789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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