View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_63 (Length: 236)
Name: NF14684_low_63
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 54236263 - 54236474
Alignment:
| Q |
1 |
gttgtatattttcagcaagcactgcagggtcgttgttgagaaaagggaaatttaattatattgcttgttattataaagtttgtaaactgtaattgtattg |
100 |
Q |
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| T |
54236263 |
gttgtatattttcagcaagcactgcagggtcgttgttgagaaaagggaaatttaattatattg-ttattat-ataaagtttgtaaactgtaattgtattg |
54236360 |
T |
|
| Q |
101 |
aaaaagaagagggaataagattagtggatcggtaacatgaatattttaattggtgtacagtgtaaaaaggttatataaagtatgggaattggatatctat |
200 |
Q |
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| T |
54236361 |
aaaaagaagagggaataagattagtggatcggtaacatgaata-tttaattggtgtacagtgtaaaaaggttatataaagtatgggaattggatatctat |
54236459 |
T |
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| Q |
201 |
ccaccaccacagtca |
215 |
Q |
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||||||||||||||| |
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| T |
54236460 |
ccaccaccacagtca |
54236474 |
T |
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