View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_7 (Length: 547)
Name: NF14684_low_7
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 4775641 - 4775115
Alignment:
| Q |
1 |
tggagggaaagaatgtgagagtgatagtgtgatatatatagcatttgggaagggaacaaatggtccaacattatacacaaaacaccgaaagttttagaat |
100 |
Q |
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| T |
4775641 |
tggagggaaagaatgtgagagtgatagtgtgatatatatagcatttgggaagggaacaaatggtccaacattatacacaaaacaccgaaagttttagaat |
4775542 |
T |
|
| Q |
101 |
taagattgcttgtcccaagaggacccaaaattccaaagcaaatggcccaccattttcagtgttcacacctaaaaagttcaaatttacctctaaataattt |
200 |
Q |
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| T |
4775541 |
taagattgcttgtcccaagaggacccaaaattccaaagcaaatggcccaccattttcagtgttcacacccaaaaagttcaaatttacctctaaataattt |
4775442 |
T |
|
| Q |
201 |
gtgaccgttgtttgttactttcttgttccaagaggcatggattatttccactgcacctatgagttgaacaaacaaacaaacaatggattcaacaactcag |
300 |
Q |
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| T |
4775441 |
gtgaccgttgtttgttactttcttgttccaagaggcatggattatttccactgcacctatgagttgaacaaacaaacaaacaatggattcaacaactcac |
4775342 |
T |
|
| Q |
301 |
aatgatcgcgtgttcacgattttcgtctctttattttaaatatacgagttttgataatgtggctaattaaatacttgacaacttagtcgatagcatgaaa |
400 |
Q |
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| T |
4775341 |
aatgatcgcgtgttcacgattttcgtctctttattttaaatatacgagttttgatgatgtggctaattaaatacttgacaatttagtcgataacatgaaa |
4775242 |
T |
|
| Q |
401 |
ataaattgttaagtgaaaagtaacctagtgtattgcatcaaatttggtcgcctttgtaatatatattttgataattcaattacatataaataattagtta |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775241 |
ataaattgttaagtgaaaagtaacctagtgtattgcatcaaatttggtcgcttttgtaatatatattttgataattcaattacatataaataattagtta |
4775142 |
T |
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| Q |
501 |
agtgggaattcccctaaacaatatcac |
527 |
Q |
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| T |
4775141 |
agtgggaattcccctaaacaatatcac |
4775115 |
T |
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