View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14684_low_71 (Length: 212)

Name: NF14684_low_71
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14684_low_71
NF14684_low_71
[»] chr2 (5 HSPs)
chr2 (1-198)||(41657491-41657690)
chr2 (110-198)||(43226423-43226508)
chr2 (112-198)||(43204715-43204800)
chr2 (150-198)||(41651630-41651678)
chr2 (154-198)||(43211738-43211782)
[»] chr8 (1 HSPs)
chr8 (110-197)||(25928703-25928787)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 41657491 - 41657690
Alignment:
Q  1 attttgggttctcattacgccaact---ttgtatgttatcgtcattctattattgttttaattgtaacaaacaaataatcaagatgactcctgcatatta 97  Q
    |||||||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41657491 attttgggttctcattacgccaactaatttgtatgttaccgtcattctattattgttttaattgtaacaaacacataatcaagatgactcctgcatatta 41657590  T
Q  98 tatttttctttccatccttttatggatctgttatatcattccttactttttggtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggt 197  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41657591 tatttttctttccatccttttatggatctgtgatatcattcctta-tttttggtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggt 41657689  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 43226508 - 43226423
Alignment:
Q  110 catccttttatggatctgttatatcattccttactttttggtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggtg 198  Q
    ||||||||||||||||  | ||||||||||||| |||   ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43226508 catccttttatggatccatgatatcattccttatttt---gtatagggaactgttgttcttgtttttcaaccagcagaagaaggaggtg 43226423  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 43204800 - 43204715
Alignment:
Q  112 tccttttatggatctgttatatcattccttactttttggtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggtg 198  Q
    ||||| |||| |||||| ||||||||||||| |||||  ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  43204800 tccttctatgtatctgtgatatcattcctta-tttttattatagggaacaatagttcttgtttttcaaccagcagaagaaggaggtg 43204715  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 41651630 - 41651678
Alignment:
Q  150 gtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggtg 198  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41651630 gtatagggaactgttgttcttgtttttcaaccagcagaagaaggaggtg 41651678  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 43211782 - 43211738
Alignment:
Q  154 agggaacagttgttcttgtttttcaaccagcagaagaaggaggtg 198  Q
    |||||||  ||||||||||||||||||||||||||||||||||||    
T  43211782 agggaacgattgttcttgtttttcaaccagcagaagaaggaggtg 43211738  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 25928787 - 25928703
Alignment:
Q  110 catccttttatggatctgttatatcattccttactttttggtatagggaacagttgttcttgtttttcaaccagcagaagaaggaggt 197  Q
    ||||||||||||||||  | ||||||||||||| |||   ||| ||||||  ||||||||||||||||||||||| ||||||||||||    
T  25928787 catccttttatggatccatgatatcattccttatttt---gtacagggaaatgttgttcttgtttttcaaccagccgaagaaggaggt 25928703  T

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