View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14684_low_75 (Length: 203)
Name: NF14684_low_75
Description: NF14684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14684_low_75 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 45746738 - 45746877
Alignment:
| Q |
19 |
acatgatatttaacattcaccttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacc |
118 |
Q |
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| T |
45746738 |
acatgatatttaacattcaccttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacc |
45746837 |
T |
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| Q |
119 |
tttgtttttcatcaggatgaggacactccttgaagaaact |
158 |
Q |
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| T |
45746838 |
tttgtttttcatcaggatgaggacactccttgaagaaact |
45746877 |
T |
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Target: scaffold0198 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 9960 - 10081
Alignment:
| Q |
37 |
accttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggat |
136 |
Q |
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| T |
9960 |
accttcatctgagttcgccgattctgaaaccagaacttgacttgtttgtttgccaagccaagcttcttgctaaggtcagttctttgcttctcatcaggat |
10059 |
T |
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| Q |
137 |
gaggacactccttgaagaaact |
158 |
Q |
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| T |
10060 |
gtggacactccttgaagaaact |
10081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 12327055 - 12327178
Alignment:
| Q |
35 |
tcaccttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcagg |
134 |
Q |
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| T |
12327055 |
tcaccttcatttgtgttcttcgattttggaaccaaaacttaacttgtcttgtttccaaacaaagccttttgctaagttccaatctttgtttctcatctgg |
12327154 |
T |
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| Q |
135 |
atgaggacactccttgaagaaact |
158 |
Q |
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| T |
12327155 |
gtgaggacactccttaaacaaact |
12327178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 28597652 - 28597614
Alignment:
| Q |
114 |
caacctttgtttttcatcaggatgaggacactccttgaa |
152 |
Q |
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| T |
28597652 |
caacctttgtttctcatcaggatgaggacactccttgaa |
28597614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 146
Target Start/End: Original strand, 28599320 - 28599429
Alignment:
| Q |
37 |
accttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggat |
136 |
Q |
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| T |
28599320 |
accttcatttgtgttcttctattttggaaccaaaacttgacttgtcttgtttccaaacaaagccttttgctaagttcaagtctttgtttttcatcaggat |
28599419 |
T |
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| Q |
137 |
gaggacactc |
146 |
Q |
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| T |
28599420 |
gaggacactc |
28599429 |
T |
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