View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14685_high_2 (Length: 358)
Name: NF14685_high_2
Description: NF14685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14685_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 16216841 - 16216513
Alignment:
| Q |
19 |
ctacttactccaattccaagtgcacaattaacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaatatccacaac |
118 |
Q |
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| T |
16216841 |
ctacttactccaattccaagtgcacaattaacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaatatccacaac |
16216742 |
T |
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| Q |
119 |
ttcttcaaaacaatctcacaagtttctgtaacatctcttcatcaccttctttcaacattgtttgctcaaagaatcatgtaacagaattaacaatcattgg |
218 |
Q |
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| T |
16216741 |
ttcttcaaaacaatctcacaaatttctgtaacatctcttcatcaccttctttcaacattgtctgcacaaagaatcatgtaacagaattaacaatcattgg |
16216642 |
T |
|
| Q |
219 |
aaacaaaataagcccagtttcttggaactcaaggaaaactctttctgaaagattttctattgattcttttttcactgttttaacaaagctttcaaacatg |
318 |
Q |
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|||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
16216641 |
aaacaaaacaaggccagtttcttggaagtcaaggaaaacgctttctgaaagattttctattgattcttttttcactgttttgacaaaactttcaaacatg |
16216542 |
T |
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| Q |
319 |
aaggttttgtcattggtttcacttggttt |
347 |
Q |
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| T |
16216541 |
aaggttttgtcattggttttacttggttt |
16216513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 16964097 - 16963769
Alignment:
| Q |
19 |
ctacttactccaattccaagtgcacaattaacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaatatccacaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16964097 |
ctacttactccaattccaagtgcacaattaacaaatagtgaaactagaattcttcttcaacttcaaacacttcttgaatatcctcaagaatatccacaac |
16963998 |
T |
|
| Q |
119 |
ttcttcaaaacaatctcacaagtttctgtaacatctcttcatcaccttctttcaacattgtttgctcaaagaatcatgtaacagaattaacaatcattgg |
218 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
16963997 |
ttcttcaaaacaatctcacaaatttctgtaacatctcttcatcaccttctttcaacattgtctgcacaaagaatcatgtaacagaattaacaatcattgg |
16963898 |
T |
|
| Q |
219 |
aaacaaaataagcccagtttcttggaactcaaggaaaactctttctgaaagattttctattgattcttttttcactgttttaacaaagctttcaaacatg |
318 |
Q |
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|||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| ||| |
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| T |
16963897 |
aaacaaaacaagaccagtttcttggaagtcaaggaaaactctttctgaaagattttctattgattctttttttactgttgtgacaaagctttcaaagatg |
16963798 |
T |
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| Q |
319 |
aaggttttgtcattggtttcacttggttt |
347 |
Q |
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| T |
16963797 |
aaggttttgtcattggtttcacttggttt |
16963769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 24825131 - 24825191
Alignment:
| Q |
279 |
tgattcttttttcactgttttaacaaagctttcaaacatgaaggttttgtcattggtttca |
339 |
Q |
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|||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
24825131 |
tgattcatttttcactgttttgacaaaactttcaaatttgaaggttttgtcattggtttca |
24825191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 48896246 - 48896157
Alignment:
| Q |
254 |
aaactctttctgaaagattttctattgattcttttttcactgttttaacaaagctttcaaacatgaaggttttgtcattggtttcacttgg |
344 |
Q |
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|||||||||| || | ||| | |||||| ||| | || |||||||| |||||||||||||| ||||||| |||| ||||||| |||||||| |
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| T |
48896246 |
aaactctttcagataaattatttattgactctctctttactgttttgacaaagctttcaaatatgaagg-tttgccattggtgtcacttgg |
48896157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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