View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14685_high_3 (Length: 300)
Name: NF14685_high_3
Description: NF14685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14685_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 48861829 - 48862100
Alignment:
| Q |
24 |
aggccacatattctcatcattgttataattagtcttgttctat-gcataatcattatatctcatcaatattccttaatagctt---cgacactccaactt |
119 |
Q |
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| T |
48861829 |
aggccacatattctcatcattgttataattagtcttgttctattgcataatcattatatctcatcaatattccttaatagctttaccgacactccaactt |
48861928 |
T |
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| Q |
120 |
taaatctcaacttgagatttgaaagtactgcgaagtagcaattgtgttttgaaaattgggggtatgaacatcatcaactgcatcatcaacaa---tgtgt |
216 |
Q |
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| T |
48861929 |
ttaatctcaacttgagatttgaaagtactgcgaagtagcaattgtgttttgaaaattgggggtatgagcatcatcaactgcatcatcaacaatgttgtgt |
48862028 |
T |
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| Q |
217 |
gaatatggagtataataacttaaatatcttttatctttacccgaaagataaaacaaagttggcatattcttc |
288 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48862029 |
gaatatggagtataataacttaaatatgttttatctttacccgaaagataaaacaaagttggcattttcttc |
48862100 |
T |
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