View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14685_high_4 (Length: 292)
Name: NF14685_high_4
Description: NF14685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14685_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 3591092 - 3591365
Alignment:
| Q |
15 |
gttatcttcgtcctcaccggcaacatcaccttctaagaggttagacttatcatcagagacgacatgtgaatcatctctgatatctaatttctgcttttga |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3591092 |
gttatcttcgtcctcaccggcaacatcaccttctaagaggttagacttatcatcagagacgacatgtgaataatctctgatatctaatttctgcttttga |
3591191 |
T |
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| Q |
115 |
tggtcaatggcgctctttataagttgtacagcctcctcagcattcttaacattaactagtgtattcgcaatgtcagactgtaacaagagttcaagaagat |
214 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3591192 |
tggtcaatggtgctctttataagttgtacagcctcctcagcattcttaacattaactagtgtattcgcaatgtcagactgtaacaagagttcaagaagat |
3591291 |
T |
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| Q |
215 |
aaacaatgtcagaatggagagaaaaataaaactcaatgtgctaaataaatagtaaatgtcccaatacgactggt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3591292 |
aaacaatgtcagaatggagagaaaaataaaactcaatgtgctaaataaatagtaaatgtcccaatacgactggt |
3591365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 35718660 - 35718557
Alignment:
| Q |
131 |
ttataagttgtacagcctcctcagcattcttaacattaactagtgtattcgcaatgtcagactgtaacaagagttcaagaagataaacaatgtcagaatg |
230 |
Q |
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||||| |||||||| |||||||| |||||||||||| |||||||| || | ||||| |||||||| ||||||||||||| |||||| ||||||||||| |
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| T |
35718660 |
ttatacgttgtacatcctcctcaacattcttaacatcgactagtgtctttggaatgtaagactgta--aagagttcaagaaaataaac-atgtcagaatg |
35718564 |
T |
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| Q |
231 |
gagagaa |
237 |
Q |
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||||||| |
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| T |
35718563 |
gagagaa |
35718557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 35718831 - 35718779
Alignment:
| Q |
38 |
catcaccttctaagaggttagacttatcatcagagacgacatgtgaatcatct |
90 |
Q |
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|||||||||||||||||||||| ||| ||||||||| | |||||||||||||| |
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| T |
35718831 |
catcaccttctaagaggttagatttaccatcagagatggcatgtgaatcatct |
35718779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 28931110 - 28931155
Alignment:
| Q |
194 |
gtaacaagagttcaagaagataaacaatgtcagaatggagagaaaaa |
240 |
Q |
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| T |
28931110 |
gtaacaagagttcaagaaaataaac-atgtcataatggagagaaaaa |
28931155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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