View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14685_low_1 (Length: 568)
Name: NF14685_low_1
Description: NF14685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14685_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 20 - 547
Target Start/End: Complemental strand, 27745472 - 27744949
Alignment:
| Q |
20 |
tgctacacgacaagaaaggtaggaagaagaaaaaagaacgatattttcttagtcaccatgtttacacattactcttcagtgttaaagtaagcttggaaca |
119 |
Q |
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| T |
27745472 |
tgctacacgacaagaaaggtatgaagaagaaaaaagaacgatatttt-taagtctccatgtttacacattactcttcagtgttaaagtaagcttggaaca |
27745374 |
T |
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| Q |
120 |
ccatgcaatacttacagaatgatacaatgaatgcttaaaaggatgttcaacaatcttcaattctaaatgttggtaagaagcactatgaaactgataaaat |
219 |
Q |
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| T |
27745373 |
ccatgcaatacttacagaatgatacaatgaatgcttaaaaggaagttcaacaatcttcaattctaaatgttggtaagaagcactatgaaactgataaaat |
27745274 |
T |
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| Q |
220 |
tattattattataaagttatgcttgaatattcaagctgaaatcaaatcgaagagctttatctatatgccattcaggccaatgtgtcacggaacaagtcag |
319 |
Q |
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| T |
27745273 |
tattattattataaagttatgcttga---ttcaagctgaaatcaaattgaagagctttatctatatgccattcaggccaatgtgtcacggcacaagtcag |
27745177 |
T |
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| Q |
320 |
ttttatggttattatatataccgcatcatgctcttctgataggcacgcatattctcattgatatcttcatcacttatatcattttcattgtgaaatagaa |
419 |
Q |
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| T |
27745176 |
ttttatggttattatatataccgcatcatgctcttctgataggcacgcatattctcattgatatcttcatcacttatatcattttcattgtgaaatagaa |
27745077 |
T |
|
| Q |
420 |
caggtccatgaatattctcctctttcaaacgttgaaggccaaactcagttggatagatagctacagatttgatcattccattaggtgggacaaatgaatt |
519 |
Q |
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| T |
27745076 |
caggtccatgaatattctcctctttcaaacgttgaaggccaaactcagttggatagatagctacagatttgatcattccattaggtgggacaaatgaatt |
27744977 |
T |
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| Q |
520 |
gaatactacatacaagtcaacagcctac |
547 |
Q |
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| T |
27744976 |
gaatactacatacaagtcaacagcctac |
27744949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 436 - 547
Target Start/End: Original strand, 38529391 - 38529502
Alignment:
| Q |
436 |
ctcctctttcaaacgttgaaggccaaactcagttggatagatagctacagatttgatcattccattaggtgggacaaatgaattgaatactacatacaag |
535 |
Q |
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|||||| |||| |||||||||||||||||| |||||||| |||| ||| |||||||||| |||| ||| |||| | |||||| | |||| |||||||||| |
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| T |
38529391 |
ctcctcattcatacgttgaaggccaaactcggttggataaatagttaccgatttgatcagtccactagttggggctaatgaactaaataatacatacaag |
38529490 |
T |
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| Q |
536 |
tcaacagcctac |
547 |
Q |
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|||||||||||| |
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| T |
38529491 |
tcaacagcctac |
38529502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 49513833 - 49513670
Alignment:
| Q |
28 |
gacaagaaaggtaggaagaagaaaaaagaacgatattttcttagtcaccatgtttacacattactcttcagtgttaaagtaagcttggaacaccatgcaa |
127 |
Q |
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||||| |||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||||| || |||||||||||| | |||||||| ||||||| |
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| T |
49513833 |
gacaaaaaaggtaggaagaagaaaaaagaatgatgttgtcttattcaccatgtttacacattacttttgagtgttaaagtatgtttggaacatcatgcaa |
49513734 |
T |
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| Q |
128 |
tacttacagaatgatacaatgaatgcttaaaaggatgttcaacaatcttcaattctaaatgttg |
191 |
Q |
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||||||||| ||||| ||||||| |||||| ||| ||| |||||| || ||||| |||||||| |
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| T |
49513733 |
tacttacagcttgatataatgaattcttaaagggaagtttaacaatattaaattccaaatgttg |
49513670 |
T |
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