View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14685_low_14 (Length: 216)

Name: NF14685_low_14
Description: NF14685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14685_low_14
NF14685_low_14
[»] chr7 (6 HSPs)
chr7 (24-110)||(16803521-16803607)
chr7 (25-99)||(23103640-23103714)
chr7 (25-106)||(29542201-29542282)
chr7 (26-109)||(2476745-2476829)
chr7 (26-54)||(12865797-12865825)
chr7 (26-54)||(26572830-26572858)
[»] chr1 (5 HSPs)
chr1 (25-106)||(33078831-33078912)
chr1 (29-109)||(39440593-39440673)
chr1 (25-109)||(1972130-1972215)
chr1 (25-109)||(15244254-15244339)
chr1 (25-62)||(15731416-15731453)
[»] chr4 (5 HSPs)
chr4 (25-109)||(10179303-10179387)
chr4 (78-110)||(50979486-50979518)
chr4 (25-98)||(30500442-30500516)
chr4 (25-54)||(19941017-19941046)
chr4 (25-54)||(50688497-50688526)
[»] chr2 (3 HSPs)
chr2 (25-110)||(25895318-25895402)
chr2 (27-99)||(17558417-17558490)
chr2 (25-60)||(5369948-5369983)
[»] chr5 (2 HSPs)
chr5 (25-110)||(23361435-23361521)
chr5 (25-110)||(16511068-16511153)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 16803521 - 16803607
Alignment:
Q  24 acatctcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattacttggtgatgcttttagctcacca 110  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  16803521 acatctcatcttctccatagatgagcatgagggatagtttttagttaattatagttaggattacttggtgatgcttttagctcacca 16803607  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 23103640 - 23103714
Alignment:
Q  25 catctcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattacttggtgatgctt 99  Q
    ||||||||||||||||||||||||||| || ||| |||||||   ||| | |||||||||| |||||||||||||    
T  23103640 catctcatcttctccatagatgagcataagtgctggtttttatagaattaaagttaggatttcttggtgatgctt 23103714  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 29542282 - 29542201
Alignment:
Q  25 catctcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattacttggtgatgcttttagctc 106  Q
    |||||||||||||||||| ||||||||||| |||| || | | | ||| | ||||| ||| |||||||||||||||||||||    
T  29542282 catctcatcttctccatatatgagcatgagtgctatttctgattgaattagagttaagataacttggtgatgcttttagctc 29542201  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 2476829 - 2476745
Alignment:
Q  26 atctcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattactt-ggtgatgcttttagctcacc 109  Q
    |||||||||||| |||||||||||||||| ||||||| ||| | | | | ||| |||||||||| ||||||||||  ||||||||    
T  2476829 atctcatcttcttcatagatgagcatgagtgctagttcttagtgatttagagtcaggattacttgggtgatgcttcaagctcacc 2476745  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 12865825 - 12865797
Alignment:
Q  26 atctcatcttctccatagatgagcatgag 54  Q
    |||||||||||||||||||||||||||||    
T  12865825 atctcatcttctccatagatgagcatgag 12865797  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 26572858 - 26572830
Alignment:
Q  26 atctcatcttctccatagatgagcatgag 54  Q
    |||||||||||||||||||||||||||||    
T  26572858 atctcatcttctccatagatgagcatgag 26572830  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 33078831 - 33078912
Alignment:
Q  25 catctcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattacttggtgatgcttttagctc 106  Q
    |||||||||||||||||||||||||||||| | ||||||||| | ||| | |||||||||||||||||||||||||||||||    
T  33078831 catctcatcttctccatagatgagcatgagtgttagtttttagtgaattagagttaggattacttggtgatgcttttagctc 33078912  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 39440673 - 39440593
Alignment:
Q  29 tcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattacttggtgatgcttttagctcacc 109  Q
    |||||||||||||||||||||||||| | || || ||| | ||| | |||||||||||| |||||||| ||||||||||||    
T  39440673 tcatcttctccatagatgagcatgagtgttatttcttagtaaattagagttaggattacgtggtgatgtttttagctcacc 39440593  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 1972130 - 1972215
Alignment:
Q  25 catctcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattac-ttggtgatgcttttagctcacc 109  Q
    ||||||||||||| |||||||||||||||| ||||||| |||  |||  | |||||||||||| ||||||||||||  ||||||||    
T  1972130 catctcatcttcttcatagatgagcatgagtgctagttcttagataactagagttaggattactttggtgatgcttcaagctcacc 1972215  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 15244254 - 15244339
Alignment:
Q  25 catctcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattactt-ggtgatgcttttagctcacc 109  Q
    |||||||||||||| ||||||||||||||| ||||||| | ||||| | | || |||||||| || ||||||| ||| ||||||||    
T  15244254 catctcatcttctctatagatgagcatgagagctagttctcaattatttagagctaggattatttaggtgatgatttaagctcacc 15244339  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 15731416 - 15731453
Alignment:
Q  25 catctcatcttctccatagatgagcatgagggctagtt 62  Q
    |||||||||||||||||||||||||||||| |||||||    
T  15731416 catctcatcttctccatagatgagcatgagtgctagtt 15731453  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 10179303 - 10179387
Alignment:
Q  25 catctcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattacttggtgatgcttttagctcacc 109  Q
    |||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||||||||||||| |||||||| |||||||||    
T  10179303 catctcatcttctccatagatgagcatgagtgctagttcttagtgaattagagttaggattacttgatgatgcttctagctcacc 10179387  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 50979486 - 50979518
Alignment:
Q  78 ttaggattacttggtgatgcttttagctcacca 110  Q
    |||||||||||||||||||||||||||||||||    
T  50979486 ttaggattacttggtgatgcttttagctcacca 50979518  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 30500442 - 30500516
Alignment:
Q  25 catctcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattac-ttggtgatgct 98  Q
    ||||||||||||  |||||||||||||||| ||||||| ||| | ||| | | |||||||||| |||||||||||    
T  30500442 catctcatcttcctcatagatgagcatgagtgctagttcttagtgaattagatttaggattactttggtgatgct 30500516  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 19941046 - 19941017
Alignment:
Q  25 catctcatcttctccatagatgagcatgag 54  Q
    ||||||||||||||||||||||||||||||    
T  19941046 catctcatcttctccatagatgagcatgag 19941017  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 50688497 - 50688526
Alignment:
Q  25 catctcatcttctccatagatgagcatgag 54  Q
    ||||||||||||||||||||||||||||||    
T  50688497 catctcatcttctccatagatgagcatgag 50688526  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 25895402 - 25895318
Alignment:
Q  25 catctcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattacttggtgatgcttttagctcacca 110  Q
    |||||||||||||||||||||||||||||| | |||||||||   ||| |  ||| ||||||||||||||||||||||||||||||    
T  25895402 catctcatcttctccatagatgagcatgagtgttagtttttagacaattagggtt-ggattacttggtgatgcttttagctcacca 25895318  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 17558490 - 17558417
Alignment:
Q  27 tctcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattactt-ggtgatgctt 99  Q
    |||||||||||||||||||||||||||| ||||||| ||| | | |   |||||||||||||| ||||||||||    
T  17558490 tctcatcttctccatagatgagcatgagtgctagttcttagtgattttaagttaggattacttaggtgatgctt 17558417  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 5369948 - 5369983
Alignment:
Q  25 catctcatcttctccatagatgagcatgagggctag 60  Q
    |||||||||||||||||||||||||||||| |||||    
T  5369948 catctcatcttctccatagatgagcatgagtgctag 5369983  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 23361435 - 23361521
Alignment:
Q  25 catctcatcttctccatagatgagcatgagggcta-gtttttaattaataatagttaggattacttggtgatgcttttagctcacca 110  Q
    |||||||| ||||||||||||||||||||||||||  |||||| | ||| | |||| ||||||| |||||||| ||| |||||||||    
T  23361435 catctcattttctccatagatgagcatgagggctatttttttagtgaattagagtttggattacgtggtgatgttttcagctcacca 23361521  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 16511068 - 16511153
Alignment:
Q  25 catctcatcttctccatagatgagcatgagggctagtttttaattaataatagttaggattacttggtgatgcttttagctcacca 110  Q
    |||||||||||||||| | ||| ||||||  ||||| ||||||| ||| | ||||||||||||||  ||||||||||||| |||||    
T  16511068 catctcatcttctccacaaatgtgcatgaccgctaggttttaataaattaaagttaggattacttattgatgcttttagcacacca 16511153  T

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