View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14685_low_2 (Length: 395)
Name: NF14685_low_2
Description: NF14685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14685_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 35876018 - 35875645
Alignment:
| Q |
14 |
ataataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaaaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35876018 |
ataataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaaaaat |
35875919 |
T |
|
| Q |
114 |
gaaaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagctcctttttccctccaatctacaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35875918 |
gaaaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagctcctttttccctccaatctacaga |
35875819 |
T |
|
| Q |
214 |
agtgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcc---ttggacggtatctgcatctctatctttggtaagtaggttttactaaac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35875818 |
agtgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcccgattggacggtacctgcatctctatctttggtaagtaggttttactaaac |
35875719 |
T |
|
| Q |
311 |
tcctcaggattcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgcattcat |
384 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35875718 |
tcctcaggactcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgcattcat |
35875645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 24450219 - 24449846
Alignment:
| Q |
14 |
ataataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaaaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24450219 |
ataataacatctaaaataacttcaaaatctatattcctatactgtctaagggtataaaattattaaattcataaacatagatgagatgaaatgcaaaaat |
24450120 |
T |
|
| Q |
114 |
gaaaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagctcctttttccctccaatctacaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24450119 |
gaaaattagtaataaagaatgatataattaataaaatcttacgacaatctccttggtccctaacttcagtcacagctcctttttccctccaatctacaga |
24450020 |
T |
|
| Q |
214 |
agtgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcc---ttggacggtatctgcatctctatctttggtaagtaggttttactaaac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24450019 |
agtgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcccgattggacggtacctgcatctctatctttggtaagtaggttttactaaac |
24449920 |
T |
|
| Q |
311 |
tcctcaggattcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgcattcat |
384 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24449919 |
tcctcaggactcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgcattcat |
24449846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University