View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14685_low_3 (Length: 385)
Name: NF14685_low_3
Description: NF14685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14685_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 369
Target Start/End: Original strand, 8065063 - 8065418
Alignment:
| Q |
12 |
taatactaacataattacaatataaaatagaataatataaaagaatcacaaacatatgtaacataccccctcaaactcaatttgtccttacccttgctct |
111 |
Q |
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| T |
8065063 |
taatcctaacataattaggatataaaatagaataata--aaagaatcataaacatatgtaacataccccctcaaactcaatttgtccttacccttgctct |
8065160 |
T |
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| Q |
112 |
tatcggttatacatgcataatctagttgtgccacttcataaacattatttctaactggttcatcacaaaactaaattgtatccatacaaccttcaccctc |
211 |
Q |
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| T |
8065161 |
tatcatttatacatgcataatctagttgtgccactccacaaacattatttctaactggttcatcacaaaactaatttgtatccatacaaccttcacccta |
8065260 |
T |
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| Q |
212 |
atgaataggtttgtcatctacttccttagcaaaattaccttctagatcaacctcttcttttgagtcatcaaaattaatgttaagggcaccgttttcttcc |
311 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8065261 |
atgaataggtttttcatctacttccttagcaaaattaccttctagatcaacctcttcttttgagtcatcaaaattaatgttaagggcaccgttttcttcc |
8065360 |
T |
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| Q |
312 |
gagtcccggtggtggagctatgctatgactagggaaggccacggcatgcaatcatttg |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8065361 |
gagtcccggtggtggagctatgctatgactagggaaggccacggcatgcaatcatttg |
8065418 |
T |
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Back To:
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 2511495 - 2511418
Alignment:
| Q |
12 |
taatactaacataattacaatataaaatagaataatataaaagaatcacaaacatatg-taacataccccctcaaactcaa |
91 |
Q |
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|||| |||||||||||||||||||||||| |||||| | |||||||||| ||||| |||||| ||||||||||||||| |
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| T |
2511495 |
taatcctaacataattacaatataaaatacaataatg--agagaatcacaa-catatcataacatcccccctcaaactcaa |
2511418 |
T |
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