View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14685_low_9 (Length: 260)
Name: NF14685_low_9
Description: NF14685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14685_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 16963788 - 16963536
Alignment:
| Q |
1 |
tcattggtttcacttggtttctggggtccactaccttccaagattagtaggtttaagtcacttgaagttttcaacatttcatcaaatttcttgtatggaa |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16963788 |
tcattggtttcacttggtttgtggggtccactaccttccaagattagtaggtttaagtcacttgaagttttcaacatttcatcaaatttcttgtatggaa |
16963689 |
T |
|
| Q |
101 |
aaattccatcatcagtttcttcaatgaaaaatctcaggagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctc |
200 |
Q |
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|||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16963688 |
aaattccatcatcagtttcttcaatgaaaagtcttaagagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctc |
16963589 |
T |
|
| Q |
201 |
tcttgaagagattaatcttgctaacaacaaattaggacctgcatttccttcat |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16963588 |
tcttgaagagattaatcttgctaacaacaaattaggacctggatttccttcat |
16963536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 16216532 - 16216281
Alignment:
| Q |
1 |
tcattggtttcacttggtttctggggtccactaccttccaagattagtaggtttaagtcacttgaagttttcaacatttcatcaaatttcttgtatggaa |
100 |
Q |
| |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16216532 |
tcattggttttacttggtttgtggggtccactaccttccaagattagtaggtt-aagtcacttgaagttttcaacatttcatcaaatttcttgtatggaa |
16216434 |
T |
|
| Q |
101 |
aaattccatcatcagtttcttcaatgaaaaatctcaggagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctc |
200 |
Q |
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| T |
16216433 |
aaattccattatcagtttcttcaatgaaaaatctcaagagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctc |
16216334 |
T |
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| Q |
201 |
tcttgaagagattaatcttgctaacaacaaattaggacctgcatttccttcat |
253 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
16216333 |
tcttgaagaggttaattttgctaacaacaaattaggacctggatttccttcat |
16216281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 24825180 - 24825395
Alignment:
| Q |
1 |
tcattggtttcacttggtttctggggtccactaccttccaagattagtaggtttaagtcacttgaagttttcaacatttcatcaaatttcttgtatggaa |
100 |
Q |
| |
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|||||||||||| | ||||| ||||||||| ||||| | || || | |||||| |||||| ||| || |||||||| ||||||||| | | ||| |
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| T |
24825180 |
tcattggtttcattaggtttatggggtccattacctgcaaaaatcaacaggttttggtcactagaaattctcaacattagttcaaatttcatttctggtg |
24825279 |
T |
|
| Q |
101 |
aaattccatcatcagtttcttcaatgaaaaatctcaggagtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaagattaacctc |
200 |
Q |
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||||||| || ||| ||||||||||||| ||| | | |||| ||||| | ||||||||| |||||||||||| | |||| |||| || || |||||||| |
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| T |
24825280 |
aaattccttcttcaatttcttcaatgaagaatttgaagagtattgttgttgctgataatcttttcaatggaaatattccagatcttaagagtttaacctc |
24825379 |
T |
|
| Q |
201 |
tcttgaagagattaat |
216 |
Q |
| |
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|||||||||| ||||| |
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| T |
24825380 |
tcttgaagaggttaat |
24825395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 48896089 - 48895984
Alignment:
| Q |
81 |
atcaaatttcttgtatggaaaaattccatcatcagtttcttcaatgaaaaatctcaggagtcttgttttggctgataattttttcaatggaagtgttcct |
180 |
Q |
| |
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|||||||||| |||||| ||||||||||||||| |||| || | ||||| |||| ||||||||||||| |||||||| |||| ||||||||||| | | |
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| T |
48896089 |
atcaaatttcatgtatgataaaattccatcatcaatttcctctttcaaaaagctcaagagtcttgttttgactgataatgtttttaatggaagtgtacat |
48895990 |
T |
|
| Q |
181 |
aatctc |
186 |
Q |
| |
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|||||| |
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|
| T |
48895989 |
aatctc |
48895984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 45485624 - 45485571
Alignment:
| Q |
139 |
agtcttgttttggctgataattttttcaatggaagtgttcctaatctcaaaaga |
192 |
Q |
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||||||||||||| |||||| ||||||||||| ||||| ||| |||||||||| |
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| T |
45485624 |
agtcttgttttggaagataatgttttcaatggatgtgtttctagtctcaaaaga |
45485571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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