View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14686_high_1 (Length: 507)
Name: NF14686_high_1
Description: NF14686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14686_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Complemental strand, 36455852 - 36455371
Alignment:
| Q |
18 |
gcttaatctcccatactttagccttgtaaaatctaactccgttaaaaacacaacctttaaccaatttctccttaagtttcttcctactaacccttccata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36455852 |
gcttaatctcccatactttagccttgtaaaatctaactccgttaaaaacacaacctttaaccaatttctccttaagtttcttcctactaacccttccata |
36455753 |
T |
|
| Q |
118 |
gcaacgatccaaatactttgttttgttatcatcgatataaatagaagccataggccatgttttatctaaacaatcttctagcccaagtccttcaaactca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36455752 |
gcaacgatccaaatactttgttttgttatcatcgatataaatagaagccataggccatgttttatctaaacaatcttctagcccaagtccttcaaactca |
36455653 |
T |
|
| Q |
218 |
tccaaccacacaccatagttatttggccacatagatagagggttaggatcaacacaacaaactttgattccataaagggaaacttgttccgcaaggcgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36455652 |
tccaaccacacaccatagttatttggccacatagatagagggttaggatcaacacaacaaaccttgattccataaagggaaacttgttccgcaaggcgaa |
36455553 |
T |
|
| Q |
318 |
tgcctgcagggccagcaccgactatgaccacgtcgaattgagaacgatcagaagggtggtgccatggaagatcgaaatctaaggcttcgggttgatactc |
417 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36455552 |
ttcctgcagggccagcaccgactatgatcacgtcgaattgagaacgatcagaagggtggtgccatggaagatcgaaatctaaggcttcgggttgatactc |
36455453 |
T |
|
| Q |
418 |
gggttttaagtcaaggaaatttccaaactttttggtactgttgatcatggtattagtttttcttgaagaaggaagtgatatt |
499 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36455452 |
ggattttaagtcaaggaaatttccaaactttttggtactgttgatcatggtattagtttttcttgaagaaggaagtgatatt |
36455371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 38 - 453
Target Start/End: Original strand, 36462733 - 36463148
Alignment:
| Q |
38 |
gccttgtaaaatctaactccgttaaaaacacaacctttaaccaatttctccttaagtttcttcctactaacccttccatagcaacgatccaaatactttg |
137 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| | || |||||||||| || ||||||||||||||||| | |
|
|
| T |
36462733 |
gccttataaaatctaacaccgttaaaaacacaacctttaaccaagttctctttaagtttccttttattaacccttccgtaacaacgatccaaatacttgg |
36462832 |
T |
|
| Q |
138 |
ttttgttatcatcgatataaatagaagccataggccatgttttatctaaacaatcttctagcccaagtccttcaaactcatccaaccacacaccatagtt |
237 |
Q |
| |
|
| | ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
36462833 |
tggttctatcatcaatataaatagaagttataggccatgttttatctaaacaatcttctagcccaagaccttcaaactcatcaaaccaaacaccatagtt |
36462932 |
T |
|
| Q |
238 |
atttggccacatagatagagggttaggatcaacacaacaaactttgattccataaagggaaacttgttccgcaaggcgaatgcctgcagggccagcaccg |
337 |
Q |
| |
|
||| ||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
36462933 |
attaggccagatagacagagggttaggatcaacacaacaaaccttcattccataaagggaaacttgttctgcaaggcgaattcctgcggggccagcaccg |
36463032 |
T |
|
| Q |
338 |
actatgaccacgtcgaattgagaacgatcagaagggtggtgccatggaagatcgaaatctaaggcttcgggttgatactcgggttttaagtcaaggaaat |
437 |
Q |
| |
|
| ||||| ||| | ||| || ||||||||||||| | ||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
36463033 |
attatgatcacattgaaacaagtgtgatcagaagggtgaaacaatggaaggtcgaaatccaaggcttcgggttgatactcggattttaagtcaagaaaat |
36463132 |
T |
|
| Q |
438 |
ttccaaactttttggt |
453 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
36463133 |
ttccaaactttctggt |
36463148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University