View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14686_high_3 (Length: 331)
Name: NF14686_high_3
Description: NF14686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14686_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 6 - 327
Target Start/End: Complemental strand, 32499787 - 32499466
Alignment:
| Q |
6 |
aatatccaaaagactaaaggtaatattagccgaagttattgtaattaaagagaatataaagttaatttttaattgaaagatttaatttgacgtgcttaca |
105 |
Q |
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| T |
32499787 |
aatatccaaaagactaaaggtaatattagccgaagttattgtaattaaagagaatataaagttaatttttaatcgaaagatttaatttgacgtgcttaca |
32499688 |
T |
|
| Q |
106 |
aatacatgatttaaagcaaggcctgaaaaaacaactagttaggccatgataaacaatgttcaagcaagtaaaagtaaatcccatatccaattttgcgttt |
205 |
Q |
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| T |
32499687 |
aatacatgatttaaagcaaggcctgaaaaaacaactagttaggccatgataaacaatgttcaagcaagtaaaagtaaatcccatatccaattttgcgttt |
32499588 |
T |
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| Q |
206 |
ttgtgtttccttgtgattgttatatgagacatta-tttcttaaagtcttcgccaagactaaatgtattttgtatacttccatactccaatgatgctaaga |
304 |
Q |
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| T |
32499587 |
ttgtgtttccttgtga-tgttatatgagacattactttcttaaagtcttcgccaagactaaatgtattttgtatacttccatacaccaatgatgctaaga |
32499489 |
T |
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| Q |
305 |
ggaagagatgaacctgtcaggat |
327 |
Q |
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| T |
32499488 |
ggaagagatgaacctgtcaggat |
32499466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 281 - 316
Target Start/End: Complemental strand, 32500696 - 32500661
Alignment:
| Q |
281 |
ttccatactccaatgatgctaagaggaagagatgaa |
316 |
Q |
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| T |
32500696 |
ttccatactccaatgatgctaagaggaagaaatgaa |
32500661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 281 - 316
Target Start/End: Complemental strand, 32511132 - 32511097
Alignment:
| Q |
281 |
ttccatactccaatgatgctaagaggaagagatgaa |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
32511132 |
ttccatactccaatgatgctaagaggaagaaatgaa |
32511097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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