View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14686_high_4 (Length: 323)

Name: NF14686_high_4
Description: NF14686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14686_high_4
NF14686_high_4
[»] chr8 (5 HSPs)
chr8 (16-318)||(32404579-32404881)
chr8 (182-283)||(32286034-32286135)
chr8 (227-273)||(7299888-7299934)
chr8 (209-283)||(7643706-7643779)
chr8 (220-282)||(45197141-45197203)
[»] chr3 (5 HSPs)
chr3 (176-295)||(26141682-26141801)
chr3 (226-295)||(26519935-26520004)
chr3 (212-295)||(50106740-50106823)
chr3 (209-275)||(36545178-36545244)
chr3 (216-272)||(31648034-31648089)
[»] chr2 (4 HSPs)
chr2 (185-295)||(34353266-34353376)
chr2 (211-277)||(43077198-43077264)
chr2 (185-293)||(37357269-37357378)
chr2 (168-260)||(16464090-16464183)
[»] chr1 (10 HSPs)
chr1 (212-295)||(5198627-5198710)
chr1 (182-270)||(41143793-41143881)
chr1 (227-293)||(13580034-13580100)
chr1 (216-294)||(42915804-42915881)
chr1 (239-294)||(25150803-25150857)
chr1 (236-294)||(23528498-23528556)
chr1 (227-277)||(47296020-47296070)
chr1 (211-268)||(4655711-4655768)
chr1 (182-270)||(41128804-41128892)
chr1 (238-283)||(42795435-42795480)
[»] chr5 (4 HSPs)
chr5 (212-295)||(38353624-38353707)
chr5 (210-270)||(9992557-9992617)
chr5 (220-288)||(5984809-5984877)
chr5 (218-277)||(3101579-3101638)
[»] chr4 (9 HSPs)
chr4 (185-295)||(24355766-24355876)
chr4 (185-295)||(34360874-34360984)
chr4 (185-270)||(34650840-34650926)
chr4 (177-282)||(55291266-55291371)
chr4 (180-295)||(42370536-42370652)
chr4 (213-275)||(3154686-3154748)
chr4 (209-282)||(19655247-19655314)
chr4 (180-250)||(20393921-20393991)
chr4 (212-273)||(43159869-43159930)
[»] chr7 (5 HSPs)
chr7 (220-277)||(41467534-41467591)
chr7 (220-283)||(24519351-24519414)
chr7 (240-294)||(10424905-10424958)
chr7 (236-287)||(32327616-32327667)
chr7 (209-273)||(8022210-8022274)
[»] chr6 (8 HSPs)
chr6 (185-295)||(10324434-10324546)
chr6 (210-282)||(2698157-2698228)
chr6 (236-295)||(29421161-29421220)
chr6 (185-295)||(8484664-8484774)
chr6 (228-283)||(8030818-8030873)
chr6 (212-272)||(32164062-32164122)
chr6 (209-270)||(24990938-24990999)
chr6 (213-250)||(26302807-26302844)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 32404881 - 32404579
Alignment:
Q  16 atcattttcaataatttattttttaatgtaaacagtgatttttattatgatatacaaacacataatagattcaactttgtttnnnnnnntttaaatatta 115  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||       |||||||||||    
T  32404881 atcattttcaataatttattttttaaagaaaacagtgatttttattatggtatacaaacacacaatagattcaactttgtttaaaaaaatttaaatatta 32404782  T
Q  116 atctctagattattgaatataaaaatcattctttataggaagatcctaattggtgccccgaggcactgattaaggaagcaaacatagtagtgctgtattg 215  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| |||| ||  ||||||||    
T  32404781 atctctagattattgaatataaaaatcattctttataagaagatcctaattggtgccccaaggcactggttaaggaagcaaatatagcagcactgtattg 32404682  T
Q  216 gaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttgacttccttaacctgttttcatcctttataata 315  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| | |||||||||||||    
T  32404681 aaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaactttcttattttggcttccttaacctgttcttatcctttataata 32404582  T
Q  316 tgt 318  Q
    |||    
T  32404581 tgt 32404579  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 32286034 - 32286135
Alignment:
Q  182 tgattaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttt 281  Q
    |||||||||||||||| ||| || |  || ||||||| ||||||| |||||| ||||||||| |||||| || |||||||||| ||||| |||||| |||    
T  32286034 tgattaaggaagcaaatataatatttttgcattggaacttgtgcattcaacttctcaaaagtataaaaagtgatattttcaacctaaaactttctttttt 32286133  T
Q  282 tg 283  Q
    ||    
T  32286134 tg 32286135  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 7299934 - 7299888
Alignment:
Q  227 gtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattt 273  Q
    ||||||||||||||||  ||||| ||||||||||||| |||||||||    
T  7299934 gtcaactcctcaaaagcataaaatatgttattttcaatttaaaattt 7299888  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 7643779 - 7643706
Alignment:
Q  209 tgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttg 283  Q
    ||||||| || ||||||| ||||||||||||||||||||||  || | |||||||| ||||| |||||| |||||    
T  7643779 tgtattgaaacttgtgcattcaactcctcaaaagtttaaaaggtgat-ttttcaacataaaactttctttttttg 7643706  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 45197203 - 45197141
Alignment:
Q  220 ttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgtttt 282  Q
    ||||||| ||||||  ||||||||||||||| |  |||||||||||||||| |||||| ||||    
T  45197203 ttgtgcattcaacttttcaaaagtttaaaaattaatattttcaacttaaaactttcttttttt 45197141  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 176 - 295
Target Start/End: Complemental strand, 26141801 - 26141682
Alignment:
Q  176 aggcactgattaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttc 275  Q
    ||||| || ||||||||||||| |||||| |  || ||||||| ||||||| |||||||||||||| | ||||||||| |||||||||||| ||| ||||    
T  26141801 aggcaatggttaaggaagcaaatatagtaatcttgcattggaacttgtgcattcaactcctcaaaaatctaaaaaatggtattttcaactttaaactttc 26141702  T
Q  276 ttgttttgacttccttaacc 295  Q
    || |||||| ||||||||||    
T  26141701 tttttttgatttccttaacc 26141682  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 26520004 - 26519935
Alignment:
Q  226 agtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttgacttccttaacc 295  Q
    ||||||||| ||||||||||||||| |  |||||| || ||||||||||||| ||||  |||||||||||    
T  26520004 agtcaactcttcaaaagtttaaaaagttgtatttttaaattaaaattttcttcttttttcttccttaacc 26519935  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 50106740 - 50106823
Alignment:
Q  212 attggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttgacttccttaacc 295  Q
    ||||||| ||||||||||||||| | |||||| |||||||| |   ||| || |||||| |||||| |||||| ||||||||||    
T  50106740 attggaacttgtgcagtcaactcattaaaagtataaaaaatatctcttttaatttaaaactttctttttttgatttccttaacc 50106823  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 36545244 - 36545178
Alignment:
Q  209 tgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttc 275  Q
    ||||||| || |||||  ||||||||||||||||  |||||| |||||||||||  |||||||||||    
T  36545244 tgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaattttc 36545178  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 31648034 - 31648089
Alignment:
Q  216 gaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaatt 272  Q
    |||||||||||| ||| || | |||||||| ||||||||| ||||||||||||||||    
T  31648034 gaagttgtgcagccaattctttaaaagttttaaaaatgtt-ttttcaacttaaaatt 31648089  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 34353266 - 34353376
Alignment:
Q  185 ttaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttga 284  Q
    |||||||| |||| |||||| |  || |||| || ||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||     
T  34353266 ttaaggaaccaaatatagtaattttgcattgaaacttgtgcattcaactcctcaaaagtttaaaaagtggtattttcaacttaaaattttctttttttgg 34353365  T
Q  285 cttccttaacc 295  Q
     ||||||||||    
T  34353366 tttccttaacc 34353376  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 277
Target Start/End: Complemental strand, 43077264 - 43077198
Alignment:
Q  211 tattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttctt 277  Q
    |||||||| ||||||  |||||||||||||||  ||||| ||||||||||||| |||||||||||||    
T  43077264 tattggaatttgtgctatcaactcctcaaaagcataaaatatgttattttcaatttaaaattttctt 43077198  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 37357269 - 37357378
Alignment:
Q  185 ttaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttt-tg 283  Q
    ||||||||||||| |||||| |  || |||| || ||||||| |||||| ||||||||| |||||| || |||||||||  |||||||||||| ||| ||    
T  37357269 ttaaggaagcaaatatagtaatcttgcattgaaacttgtgcattcaacttctcaaaagtataaaaagtgatattttcaatctaaaattttcttttttctg 37357368  T
Q  284 acttccttaa 293  Q
    | ||||||||    
T  37357369 atttccttaa 37357378  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 16464090 - 16464183
Alignment:
Q  168 gtgccccgaggcactgattaaggaagcaaacatagtag-tgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttatttt 260  Q
    |||||||| ||||||| ||||||||||||| ||||||| |  |||||||||| ||||| | |||| | |||||||||  ||||| |||||||||    
T  16464090 gtgccccggggcactggttaaggaagcaaatatagtagcttttgtattggaaattgtgtaatcaatttctcaaaagtcaaaaaagtgttatttt 16464183  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 5198710 - 5198627
Alignment:
Q  212 attggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttgacttccttaacc 295  Q
    ||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||| ||| |||||||  |||||||||||    
T  5198710 attggaagttgcgcagtcaactcgtcaaaagtttaaaaaatattatttttaacttaaaactttattgttttatcttccttaacc 5198627  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 41143793 - 41143881
Alignment:
Q  182 tgattaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaa 270  Q
    |||||||||||||||| ||| ||||  |||||||||| ||||| | |||| ||||||||||| ||||||| ||| | ||||||||||||    
T  41143793 tgattaaggaagcaaatataatagtattgtattggaacttgtgtaatcaattcctcaaaagtgtaaaaaacgttgtcttcaacttaaaa 41143881  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 13580034 - 13580100
Alignment:
Q  227 gtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttgacttccttaa 293  Q
    ||||||||||| | |||||||||| ||||||||||||||||||| ||| |||||||  |||||||||    
T  13580034 gtcaactcctcgatagtttaaaaagtgttattttcaacttaaaactttattgttttatcttccttaa 13580100  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 42915804 - 42915881
Alignment:
Q  216 gaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttgacttccttaac 294  Q
    ||||||||||||||||||| |||||||| | |||| ||||||||| || |||||| |||||| ||||| ||||||||||    
T  42915804 gaagttgtgcagtcaactcatcaaaagtct-aaaagtgttatttttaaattaaaactttcttattttggcttccttaac 42915881  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 25150857 - 25150803
Alignment:
Q  239 aaagtttaaaaaatgttattttcaacttaaaattttcttgttttgacttccttaac 294  Q
    |||||||||||||||||||||| || |||||||||| ||||||||||||| |||||    
T  25150857 aaagtttaaaaaatgttatttttaatttaaaatttt-ttgttttgacttctttaac 25150803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 23528556 - 23528498
Alignment:
Q  236 tcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttgacttccttaac 294  Q
    ||||||||||||||||||||||||| || |||||| ||||||  |||||||| ||||||    
T  23528556 tcaaaagtttaaaaaatgttattttaaatttaaaactttctttctttgactttcttaac 23528498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 47296020 - 47296070
Alignment:
Q  227 gtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttctt 277  Q
    ||||| ||||||||||| |||||||||||||||||||||| ||| ||||||    
T  47296020 gtcaaatcctcaaaagtataaaaaatgttattttcaacttcaaactttctt 47296070  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 4655711 - 4655768
Alignment:
Q  211 tattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaa 268  Q
    ||||| || ||||||| ||||||||| ||||||||||||| || ||||||||||||||    
T  4655711 tattgaaatttgtgcattcaactccttaaaagtttaaaaagtgatattttcaacttaa 4655768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 41128892 - 41128804
Alignment:
Q  182 tgattaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaa 270  Q
    |||||||||||||||| ||| ||||  | |||||||| ||||| | |||| ||||||||||| ||||||| ||| | ||||||| ||||    
T  41128892 tgattaaggaagcaaatataatagtattatattggaacttgtgtaatcaattcctcaaaagtgtaaaaaacgttgtcttcaactgaaaa 41128804  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 42795435 - 42795480
Alignment:
Q  238 aaaagtttaaaaaatgttattttcaacttaaaattttcttgttttg 283  Q
    |||||| ||||||||| | ||||||||||||||||||||| |||||    
T  42795435 aaaagtataaaaaatgattttttcaacttaaaattttctttttttg 42795480  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 38353707 - 38353624
Alignment:
Q  212 attggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttgacttccttaacc 295  Q
    ||||||| ||||||| |||||||||||||||| |||||| || |||||||||||||||| |||||| |||| | ||||||||||    
T  38353707 attggaacttgtgcattcaactcctcaaaagtctaaaaagtggtattttcaacttaaaactttctttttttaatttccttaacc 38353624  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 9992617 - 9992557
Alignment:
Q  210 gtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaa 270  Q
    ||||||||| |||||||  |||||| ||||||||||||||| || ||||||||||||||||    
T  9992617 gtattggaacttgtgcatccaactcttcaaaagtttaaaaagtggtattttcaacttaaaa 9992557  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 5984877 - 5984809
Alignment:
Q  220 ttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttgacttc 288  Q
    ||||||||||||||  |||||| |||| ||||| |||||||||| |||||| ||| ||||||| |||||    
T  5984877 ttgtgcagtcaacttttcaaaaatttagaaaatattattttcaatttaaaacttttttgttttaacttc 5984809  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 3101638 - 3101579
Alignment:
Q  218 agttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttctt 277  Q
    ||||||||| ||||||| | ||||||||||||||| ||| ||| || |||||||||||||    
T  3101638 agttgtgcaatcaactcattaaaagtttaaaaaatattacttttaaattaaaattttctt 3101579  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 295
Target Start/End: Complemental strand, 24355876 - 24355766
Alignment:
Q  185 ttaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttga 284  Q
    ||||||||||||| |||||| |   | ||||||| ||||||| |||||||||||||||| ||||||||  |||||||||||||||| |||||  |||||     
T  24355876 ttaaggaagcaaatatagtaatatcgcattggaacttgtgcattcaactcctcaaaagtctaaaaaattgtattttcaacttaaaactttctctttttgg 24355777  T
Q  285 cttccttaacc 295  Q
     ||||||||||    
T  24355776 tttccttaacc 24355766  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 34360874 - 34360984
Alignment:
Q  185 ttaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttga 284  Q
    ||||||||||||| |||||| |   |||||| || ||||||| |||||||||||||||| |||||| || |||||||||||||||| |||||| ||||      
T  34360874 ttaaggaagcaaatatagtaatctcgtattgaaacttgtgcattcaactcctcaaaagtctaaaaagtggtattttcaacttaaaactttcttttttttg 34360973  T
Q  285 cttccttaacc 295  Q
     ||||||||||    
T  34360974 tttccttaacc 34360984  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 34650926 - 34650840
Alignment:
Q  185 ttaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatg-ttattttcaacttaaaa 270  Q
    |||| |||||||| |||||| |  || ||||||| ||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  34650926 ttaaagaagcaaatatagtaattttgcattggaatttgtgcattcaactcctcaaaagtttaaaaaatgagtattttcaacttaaaa 34650840  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 282
Target Start/End: Original strand, 55291266 - 55291371
Alignment:
Q  177 ggcactgattaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttct 276  Q
    |||| |||||||||||||||| |||||| |  || |||| || ||||||| | |||| ||||||| | ||||||||| |||||||||| ||||| |||||    
T  55291266 ggcaatgattaaggaagcaaatatagtaattttgcattgaaacttgtgcattaaacttctcaaaaatataaaaaatgatattttcaacctaaaactttct 55291365  T
Q  277 tgtttt 282  Q
    | ||||    
T  55291366 tttttt 55291371  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 42370652 - 42370536
Alignment:
Q  180 actgattaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgt 279  Q
    |||| |||||||| |||| || |||||  ||||||| ||||||| || |||||| |||||||  ||||||| |||| | ||||||||||| |||| || |    
T  42370652 actggttaaggaaacaaatattgtagtattgtattgaaagttgtacaatcaacttctcaaaaacttaaaaagtgttgtcttcaacttaaatttttttttt 42370553  T
Q  280 -tttgacttccttaacc 295  Q
     |||| |||||||||||    
T  42370552 gtttggcttccttaacc 42370536  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 3154686 - 3154748
Alignment:
Q  213 ttggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttc 275  Q
    |||||||||||||||||||  |||||||||| |||||| ||  |||||||| |||||| ||||    
T  3154686 ttggaagttgtgcagtcaatgcctcaaaagtctaaaaagtgacattttcaatttaaaactttc 3154748  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 19655247 - 19655314
Alignment:
Q  209 tgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgtttt 282  Q
    |||||||||| ||||||| |||||||||| |||      |||||| |||||||||||||||| |||||||||||    
T  19655247 tgtattggaatttgtgcattcaactcctctaaa------aaaatggtattttcaacttaaaactttcttgtttt 19655314  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 20393921 - 20393991
Alignment:
Q  180 actgattaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaa 250  Q
    |||| ||||||||||||| ||| || |  | |||||||| ||||||||||||||| | |||||||||||||    
T  20393921 actggttaaggaagcaaatataataatattatattggaacttgtgcagtcaactcattaaaagtttaaaaa 20393991  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 43159869 - 43159930
Alignment:
Q  212 attggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattt 273  Q
    ||||||| |||||  |||||||||||||||  ||||||| |||||||||||  |||||||||    
T  43159869 attggaacttgtgttgtcaactcctcaaaaacttaaaaagtgttattttcattttaaaattt 43159930  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 41467591 - 41467534
Alignment:
Q  220 ttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttctt 277  Q
    ||||||| |||||| ||||||||| ||||||||| |||||||||||||||||||||||    
T  41467591 ttgtgcattcaacttctcaaaagtctaaaaaatggtattttcaacttaaaattttctt 41467534  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 24519351 - 24519414
Alignment:
Q  220 ttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttg 283  Q
    ||||||| |||||| ||||||| | |||||| ||||||||| |||||||||||||||| |||||    
T  24519351 ttgtgcaatcaacttctcaaaaatctaaaaagtgttatttttaacttaaaattttctttttttg 24519414  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 10424958 - 10424905
Alignment:
Q  240 aagtttaaaaaatgttattttcaacttaaaattttcttgttttgacttccttaac 294  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||||||||| |||||    
T  10424958 aagtttaaaaagtgttattttcaactt-aaactttcttgttttgacttctttaac 10424905  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 32327667 - 32327616
Alignment:
Q  236 tcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttgactt 287  Q
    |||||||| |||||| ||||||||| | ||||||||||| ||||||||||||    
T  32327667 tcaaaagtctaaaaagtgttatttttatcttaaaattttattgttttgactt 32327616  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 8022274 - 8022210
Alignment:
Q  209 tgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattt 273  Q
    |||||| |||| ||||  |||||||||||||||   ||||||||||||||||||  |||||||||    
T  8022274 tgtattagaaggtgtgatgtcaactcctcaaaaacataaaaaatgttattttcactttaaaattt 8022210  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 10324434 - 10324546
Alignment:
Q  185 ttaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagttt--aaaaaatgttattttcaacttaaaattttcttgtttt 282  Q
    ||||||| ||||| ||||||||  || ||||||| |||| || |||||||||||||||| |  |||||||  |||||||||||||||| |||||| ||||    
T  10324434 ttaaggatgcaaatatagtagtattgcattggaacttgtacattcaactcctcaaaagtctaaaaaaaatagtattttcaacttaaaactttcttttttt 10324533  T
Q  283 gacttccttaacc 295  Q
    |  ||||||||||    
T  10324534 ggtttccttaacc 10324546  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 2698157 - 2698228
Alignment:
Q  210 gtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgtttt 282  Q
    ||||| ||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||| |||||| ||||    
T  2698157 gtatttgaagttgtggagtcaactcttcaaaagtctaaaa-atgttattttcaacttaaaactttcttatttt 2698228  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 29421220 - 29421161
Alignment:
Q  236 tcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttgacttccttaacc 295  Q
    |||||||| ||||||||||||||||||||||||||||| ||| |||| ||| ||||||||    
T  29421220 tcaaaagtgtaaaaaatgttattttcaacttaaaatttactttttttaactgccttaacc 29421161  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 295
Target Start/End: Complemental strand, 8484774 - 8484664
Alignment:
Q  185 ttaaggaagcaaacatagtagtgctgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttga 284  Q
    ||||||||||||| |||||| |  |  ||||||| ||||||| |||||| ||||||||| |||||| || |||| ||||| ||||| |||||| |||||     
T  8484774 ttaaggaagcaaatatagtaatttttaattggaatttgtgcattcaacttctcaaaagtataaaaagtgatattctcaacctaaaactttctttttttgg 8484675  T
Q  285 cttccttaacc 295  Q
     ||||||||||    
T  8484674 tttccttaacc 8484664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 8030873 - 8030818
Alignment:
Q  228 tcaactcctcaaaagtttaaaaaatgttattttcaacttaaaattttcttgttttg 283  Q
    |||||| |||||||||||||||| || |||||||||||||||| |||||| |||||    
T  8030873 tcaacttctcaaaagtttaaaaagtgctattttcaacttaaaactttctttttttg 8030818  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 32164122 - 32164062
Alignment:
Q  212 attggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaatt 272  Q
    ||||||| |||| ||||||| || |||||| |||||||| || ||||||||||||||||||    
T  32164122 attggaacttgtacagtcaattcttcaaaaatttaaaaagtgatattttcaacttaaaatt 32164062  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 24990999 - 24990938
Alignment:
Q  209 tgtattggaagttgtgcagtcaactcctcaaaagtttaaaaaatgttattttcaacttaaaa 270  Q
    |||||| ||||||| ||| |||| ||||||||||| |||||| ||||||||| || ||||||    
T  24990999 tgtattagaagttgagcattcaattcctcaaaagtctaaaaagtgttatttttaatttaaaa 24990938  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 26302807 - 26302844
Alignment:
Q  213 ttggaagttgtgcagtcaactcctcaaaagtttaaaaa 250  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  26302807 ttggaagttgtacagtcaactcctcaaaagtctaaaaa 26302844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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