View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14686_low_2 (Length: 449)
Name: NF14686_low_2
Description: NF14686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14686_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 165 - 433
Target Start/End: Original strand, 36915977 - 36916245
Alignment:
| Q |
165 |
gctataacaataatattacatacttgcagtgacggagagactcataacgttcatcttcagtcataaccgttttgcctttatacttatgtgtcaccgcatc |
264 |
Q |
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| T |
36915977 |
gctataacaataatattacatacttgcagtgacggagagactcataacgttcatcttcagtcataaccgttttgcctttatacttatgtgtcaccgcatc |
36916076 |
T |
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| Q |
265 |
gctgcagcatccaacaagaagatacgtgttcggaaatctacaattcaatgaaaaaagtgattatataaataatcgattaattgaggaataattaagtaga |
364 |
Q |
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| T |
36916077 |
gctgcagcatccaacaagaagatacgtgttcggaaatctacaattcaatgaaaaaagtgattatataaataatcgattaattgaggaataattaagtaga |
36916176 |
T |
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| Q |
365 |
gaatgaagagtaatgaagattacgattttttggcttgttcaagagaacgagcgtggccgaagtggaaga |
433 |
Q |
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| T |
36916177 |
gaatgaagagtaatgaagattacgattttttggcttgttcaagagaacgagcgtggccgaagtggaaga |
36916245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 36915820 - 36915906
Alignment:
| Q |
10 |
atcaaccttatttttatcaagaaactcttgattaataacccaaggtgcatcaggtatcacttcatccacccatctacacacacacac |
96 |
Q |
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| T |
36915820 |
atcaatcttatttttatcaagaaactcttgattaataacccaaggtgcatcaggtatcacttcatccacccatctacacacacacac |
36915906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 309
Target Start/End: Original strand, 15191840 - 15191963
Alignment:
| Q |
186 |
acttgcagtgacggagagactcataacgttcatcttcagtcataaccgttttgcctttatacttatgtgtcaccgcatcgctgcagcatccaacaagaag |
285 |
Q |
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| T |
15191840 |
acttgcaatgacgaagagactcgtagcgttcttgctcattcataacagttttacccttgtacttgtgtgtgatctcatcactgcagcatccaacaaggag |
15191939 |
T |
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| Q |
286 |
atacgtgttcggaaatctacaatt |
309 |
Q |
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| T |
15191940 |
atatgtattcggaaaccttcaatt |
15191963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 24188708 - 24188612
Alignment:
| Q |
186 |
acttgcagtgacggagagactcataacgttcatcttcagtcataaccgttttgcctttatacttatgtgtcaccgcatcgctgcagcatccaacaag |
282 |
Q |
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| T |
24188708 |
acttgcagtgacgaagggactcatagcgttcttgctcattcataacagttttacccttttacttgtgtgtgatctcatcactgcagcatccaacaag |
24188612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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