View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14686_low_3 (Length: 394)
Name: NF14686_low_3
Description: NF14686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14686_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 34344819 - 34345207
Alignment:
| Q |
1 |
caacaattcgcgtttgcaatgaagttagaaataccagcttcttaaaatgacgttgaattttcataaagacacgagatatatcacctaaccctaatctaaa |
100 |
Q |
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| T |
34344819 |
caacaatccacgtttgcagtgaagttaggaataccagctttttaaaatcacgttgaatttgcataaagacacgagatatatcacctaaccctaatctaaa |
34344918 |
T |
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| Q |
101 |
caagtcataaaacataaggtacattcttttcaaaatttcagagttaaatgcatagtctctttaaaatcgcaacatttccagtataacccttatataaatc |
200 |
Q |
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| T |
34344919 |
caagtcataaaacataaggtacattctttttaaaatttcagagttaaatgcatagtctctttaaaatcgcaacatttcaagtataacccttatataaatc |
34345018 |
T |
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| Q |
201 |
acgacttagattgtacccnnnnnnnnncatatttcacaaaataaagagttatnnnnnnntaccgttggctttataatacgtttttgaaaattgacttaga |
300 |
Q |
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| T |
34345019 |
acgacttagattgtacc--aaaaaaaacatatttcacaaaataaagagttat-aaaaaataccgttggctttataatacgtttttgaaaattgacttaga |
34345115 |
T |
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| Q |
301 |
ttttacatttcatatttctaaagttttttcatcaaacaaacctttattcttatttcaaatcctaatactctttttcttttcagaattatcta |
392 |
Q |
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| T |
34345116 |
ttttacatttcatatttctaaagttttttcatcaaacaaacctttattcttatttcaaatcctaatactctttttctattcagaattgtcta |
34345207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 12788759 - 12788711
Alignment:
| Q |
9 |
cgcgtttgcaatgaagttagaaataccagcttcttaaaatgacgttgaa |
57 |
Q |
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|||||||||| ||||| ||| ||||||||||||||||||| |||||||| |
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| T |
12788759 |
cgcgtttgcagtgaagctaggaataccagcttcttaaaatcacgttgaa |
12788711 |
T |
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