View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14686_low_4 (Length: 344)
Name: NF14686_low_4
Description: NF14686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14686_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 5689536 - 5689208
Alignment:
| Q |
1 |
tatgcttgccctcatctctagagtataacgacaagattttattttataggcatgctattggataggtctttctgtattatttggacactttttgcaagta |
100 |
Q |
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| T |
5689536 |
tatgcttgccctcatctctagagtataacgacaagattttattttataggcatgctattggataggtctttctgtattatttggacactttttgcaagta |
5689437 |
T |
|
| Q |
101 |
gtatatcgtttgatgaatagtcaaatactgtctatatgcgattgtttacgttgaatattttgatttaaaatctatatttaattactccattggtcccaaa |
200 |
Q |
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| T |
5689436 |
gtatatcgtttgatgaatagtcaaatactgtttatatgcgattgtttacgttgaatattttgatttaaaatctatatttaattactccatttgtcccaaa |
5689337 |
T |
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| Q |
201 |
ttataaattactactttgcaaaacaaaaaatcttgcaagttttatnnnnnnnntaataatcttggaagttttatttttaaagacaaaaatcttggaagct |
300 |
Q |
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| T |
5689336 |
ttataaatgactactttgcaaaacaaaaaatcttggaagttttataaaaaaa--aataatcttggaagttttatttttaaagacaaaaatcttggaagct |
5689239 |
T |
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| Q |
301 |
ttaaatcattttacaattattgtcatactat |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5689238 |
ttaaatcattttacaattattgtcatactat |
5689208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 5680074 - 5680038
Alignment:
| Q |
41 |
attttataggcatgctattggataggtctttctgtat |
77 |
Q |
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|||||||||||||||||||||| | |||||||||||| |
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| T |
5680074 |
attttataggcatgctattggacatgtctttctgtat |
5680038 |
T |
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