View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14687_high_2 (Length: 359)

Name: NF14687_high_2
Description: NF14687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14687_high_2
NF14687_high_2
[»] chr8 (7 HSPs)
chr8 (1-191)||(9662058-9662253)
chr8 (258-355)||(9662322-9662419)
chr8 (260-322)||(24768658-24768720)
chr8 (131-189)||(15568711-15568770)
chr8 (128-177)||(1553968-1554020)
chr8 (131-189)||(19152440-19152500)
chr8 (129-191)||(25653701-25653765)
[»] chr7 (4 HSPs)
chr7 (265-322)||(26254756-26254813)
chr7 (129-191)||(12005261-12005325)
chr7 (131-191)||(442848-442910)
chr7 (131-191)||(47370466-47370529)
[»] chr5 (3 HSPs)
chr5 (265-322)||(6117705-6117762)
chr5 (130-191)||(8855678-8855741)
chr5 (132-191)||(12147908-12147970)
[»] chr4 (5 HSPs)
chr4 (130-191)||(46523222-46523284)
chr4 (129-191)||(12388083-12388146)
chr4 (128-190)||(24675281-24675345)
chr4 (265-322)||(29104280-29104337)
chr4 (135-177)||(31068719-31068763)
[»] chr6 (3 HSPs)
chr6 (131-190)||(29942526-29942586)
chr6 (131-176)||(16659791-16659837)
chr6 (265-322)||(34414469-34414526)
[»] chr1 (2 HSPs)
chr1 (127-187)||(22791604-22791666)
chr1 (265-322)||(21770874-21770931)
[»] chr2 (6 HSPs)
chr2 (132-187)||(31989350-31989407)
chr2 (130-191)||(43830501-43830565)
chr2 (293-322)||(16204534-16204563)
chr2 (129-191)||(38128075-38128139)
chr2 (130-177)||(18386591-18386641)
chr2 (130-178)||(30728932-30728980)
[»] chr3 (3 HSPs)
chr3 (266-322)||(2985697-2985753)
chr3 (128-177)||(20078353-20078404)
chr3 (126-177)||(26932534-26932586)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 9662058 - 9662253
Alignment:
Q  1 ttgtttgtggaggtatgggacaggagaattttgttggaaacgtgttttgtgaaggaaaagggaaaagaaaagtatatattgaattgaatttta----nnn 96  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  9662058 ttgtttgtggaggtatgggacaggggaattttgttggaaacgtgttttgtgaaggaaaagggaaaagaaaagtatatattgaattgaattttattttatt 9662157  T
Q  97 nnnnnactcaaaagtttttattgaaatagattaaagggttaatagtgtttta-ccctgtaatataagctatttctggttttcctccttgtaaaata 191  Q
         |||||||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||||| | | ||||||||||    
T  9662158 ttttgactcaaaagtttgtattgaaatagattaaagtgttaatagtgttttagctctgtaatataagttatttctggtttttccctttgtaaaata 9662253  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 258 - 355
Target Start/End: Original strand, 9662322 - 9662419
Alignment:
Q  258 ttccttgtaatttgagcaaatttccgttaatcttttgccatatctttgattttgtacagttaaaaatcaccaatcacacaccacgcctctccatctct 355  Q
    |||||||||||||||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||||||| ||||||||||||| ||||||||||    
T  9662322 ttccttgtaatttgagcaaatttcggttaaccctttgccatatctttgattttgtatggttaaaaatcaccaagcacacaccacgcccctccatctct 9662419  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 24768720 - 24768658
Alignment:
Q  260 ccttgtaatttgagcaaatttccgttaatcttttgccatatctttgattttgtacagttaaaa 322  Q
    |||||||||||||||||||||| ||| | |  |||||||||||| ||||||||||||| ||||    
T  24768720 ccttgtaatttgagcaaatttcggtttaccccttgccatatcttcgattttgtacagtcaaaa 24768658  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 15568711 - 15568770
Alignment:
Q  131 agggttaatagtgttttacc-ctgtaatataagctatttctggttttcctccttgtaaaa 189  Q
    ||||||||||||| |||||| ||||||||||||||||||| | |||||| || |||||||    
T  15568711 agggttaatagtgatttacctctgtaatataagctatttccgattttccaccctgtaaaa 15568770  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 1554020 - 1553968
Alignment:
Q  128 taaagggttaatagtgttttac---cctgtaatataagctatttctggttttc 177  Q
    |||||||||||||||||||| |   ||||||||||| ||||||||||||||||    
T  1554020 taaagggttaatagtgtttttcacccctgtaatataggctatttctggttttc 1553968  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 19152500 - 19152440
Alignment:
Q  131 agggttaatagtgtttta--ccctgtaatataagctatttctggttttcctccttgtaaaa 189  Q
    ||||||||||||||||||  |||||||||||| | |||||| |||||| | ||||||||||    
T  19152500 agggttaatagtgttttaacccctgtaatatatgttatttccggttttgccccttgtaaaa 19152440  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 25653701 - 25653765
Alignment:
Q  129 aaagggttaatagtgtttta--ccctgtaatataagctatttctggttttcctccttgtaaaata 191  Q
    ||||||||||||||||||||  |||||||||||| |  |||| ||||||||| || |||||||||    
T  25653701 aaagggttaatagtgttttaccccctgtaatataggtcatttttggttttcccccctgtaaaata 25653765  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 26254756 - 26254813
Alignment:
Q  265 taatttgagcaaatttccgttaatcttttgccatatctttgattttgtacagttaaaa 322  Q
    ||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||| ||||    
T  26254756 taatttgagcaaatttcggttaaccttctgccatatcttcgattttgtacagtcaaaa 26254813  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 12005261 - 12005325
Alignment:
Q  129 aaagggttaatagtgtttta--ccctgtaatataagctatttctggttttcctccttgtaaaata 191  Q
    ||||||||||||||||||||  |||||||||||| || |||||  ||||||| ||||||||||||    
T  12005261 aaagggttaatagtgttttaccccctgtaatataggccatttccagttttcccccttgtaaaata 12005325  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 442910 - 442848
Alignment:
Q  131 agggttaatagtgttttaccc--tgtaatataagctatttctggttttcctccttgtaaaata 191  Q
    |||||||||||||||||||||  ||||||||| || ||||   ||||||||||||||||||||    
T  442910 agggttaatagtgttttaccccctgtaatataggccattttcagttttcctccttgtaaaata 442848  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 47370529 - 47370466
Alignment:
Q  131 agggttaatagtgttttacc---ctgtaatataagctatttctggttttcctccttgtaaaata 191  Q
    ||||||||||||||||||||   |||||||||| || |||||  ||||||| ||||||||||||    
T  47370529 agggttaatagtgttttacctccctgtaatataggccatttccagttttcccccttgtaaaata 47370466  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 6117762 - 6117705
Alignment:
Q  265 taatttgagcaaatttccgttaatcttttgccatatctttgattttgtacagttaaaa 322  Q
    ||||||||||||||||||||| ||| | ||||||||||| ||||||||||||| ||||    
T  6117762 taatttgagcaaatttccgtttatcctctgccatatcttcgattttgtacagtcaaaa 6117705  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 8855741 - 8855678
Alignment:
Q  130 aagggttaatagtgttttacc--ctgtaatataagctatttctggttttcctccttgtaaaata 191  Q
    |||||||||||||||||||||  ||||||||||||  ||||| | |||||| ||||||||||||    
T  8855741 aagggttaatagtgttttacctcctgtaatataagtcatttccgattttcccccttgtaaaata 8855678  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 12147908 - 12147970
Alignment:
Q  132 gggttaatagtgttttacc---ctgtaatataagctatttctggttttcctccttgtaaaata 191  Q
    |||||||||||||||||||   |||||||||| |  |||||||||||| | ||||||||||||    
T  12147908 gggttaatagtgttttaccaccctgtaatataggtcatttctggttttaccccttgtaaaata 12147970  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 46523284 - 46523222
Alignment:
Q  130 aagggttaatagtgttttaccc-tgtaatataagctatttctggttttcctccttgtaaaata 191  Q
    |||||||||| ||||||||||| ||||||||||| ||||| |||||||||||| | |||||||    
T  46523284 aagggttaatggtgttttacccctgtaatataagttatttttggttttcctccctttaaaata 46523222  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 12388083 - 12388146
Alignment:
Q  129 aaagggttaatagtgtttta-ccctgtaatataagctatttctggttttcctccttgtaaaata 191  Q
    |||||||||||||||||||| |||||||||||| |  ||||| |||||| | ||||||||||||    
T  12388083 aaagggttaatagtgttttacccctgtaatataggtcatttccggttttaccccttgtaaaata 12388146  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 24675281 - 24675345
Alignment:
Q  128 taaagggttaatagtgttttacc--ctgtaatataagctatttctggttttcctccttgtaaaat 190  Q
    ||||||||||||| |||||||||  |||||||||| |||||||  | |||| |||||||||||||    
T  24675281 taaagggttaatattgttttacctcctgtaatataggctatttaggattttactccttgtaaaat 24675345  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 29104337 - 29104280
Alignment:
Q  265 taatttgagcaaatttccgttaatcttttgccatatctttgattttgtacagttaaaa 322  Q
    ||||||||||||||||| ||| | |   ||||||||||| ||||||||||||||||||    
T  29104337 taatttgagcaaatttcggtttaccccctgccatatcttcgattttgtacagttaaaa 29104280  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 31068763 - 31068719
Alignment:
Q  135 ttaatagtgtttt--accctgtaatataagctatttctggttttc 177  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||    
T  31068763 ttaatagtgtttttcaccctgtaatataggctatttctggttttc 31068719  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 29942526 - 29942586
Alignment:
Q  131 agggttaatagtgttttaccc-tgtaatataagctatttctggttttcctccttgtaaaat 190  Q
    ||||||||||||||||||||| |||||||||||||||||   ||||||| || ||||||||    
T  29942526 agggttaatagtgttttacccctgtaatataagctattttcagttttccaccctgtaaaat 29942586  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 16659837 - 16659791
Alignment:
Q  131 agggttaatagtgtttta-ccctgtaatataagctatttctggtttt 176  Q
    |||||||||||||||||| |||||||||||||| |||||| ||||||    
T  16659837 agggttaatagtgttttacccctgtaatataagttatttccggtttt 16659791  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 34414469 - 34414526
Alignment:
Q  265 taatttgagcaaatttccgttaatcttttgccatatctttgattttgtacagttaaaa 322  Q
    |||||||||||||||||  || ||| | || |||||||| ||||||||||||||||||    
T  34414469 taatttgagcaaatttcgatttatcctctgtcatatcttcgattttgtacagttaaaa 34414526  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 22791604 - 22791666
Alignment:
Q  127 ttaaagggttaatagtgttttacc--ctgtaatataagctatttctggttttcctccttgtaa 187  Q
    ||||||||||| ||||||||||||  |||||||||||  ||||| |||||||||||| |||||    
T  22791604 ttaaagggttagtagtgttttaccctctgtaatataaaatatttatggttttcctccctgtaa 22791666  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 21770931 - 21770874
Alignment:
Q  265 taatttgagcaaatttccgttaatcttttgccatatctttgattttgtacagttaaaa 322  Q
    ||||||||||||||||| ||| | | | ||||||||||| ||||||||||||| ||||    
T  21770931 taatttgagcaaatttcggtttaccctctgccatatcttcgattttgtacagtcaaaa 21770874  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 31989350 - 31989407
Alignment:
Q  132 gggttaatagtgttttaccc--tgtaatataagctatttctggttttcctccttgtaa 187  Q
    ||||||||||||||||||||  ||||||||| || ||||| ||||| |||||||||||    
T  31989350 gggttaatagtgttttaccccctgtaatataggccatttccggtttacctccttgtaa 31989407  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 43830501 - 43830565
Alignment:
Q  130 aagggttaatagtgtttta---ccctgtaatataagctatttctggttttcctccttgtaaaata 191  Q
    |||||||||||||| ||||   ||||||||| || | ||||||||||||||| ||||||||||||    
T  43830501 aagggttaatagtgctttaactccctgtaatttaggttatttctggttttcccccttgtaaaata 43830565  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 322
Target Start/End: Original strand, 16204534 - 16204563
Alignment:
Q  293 tgccatatctttgattttgtacagttaaaa 322  Q
    ||||||||||||||||||||||||||||||    
T  16204534 tgccatatctttgattttgtacagttaaaa 16204563  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 38128139 - 38128075
Alignment:
Q  129 aaagggttaatagtgttttaccc--tgtaatataagctatttctggttttcctccttgtaaaata 191  Q
    |||||||||||||| ||||||||  ||||||||||| ||||||  ||||||| || |||||||||    
T  38128139 aaagggttaatagtcttttaccccctgtaatataagttatttccagttttcccccctgtaaaata 38128075  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 18386641 - 18386591
Alignment:
Q  130 aagggttaatagtgttttac---cctgtaatataagctatttctggttttc 177  Q
    |||||||||||||||||| |   ||||||||||||||||||| ||||||||    
T  18386641 aagggttaatagtgtttttcacccctgtaatataagctatttttggttttc 18386591  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 30728980 - 30728932
Alignment:
Q  130 aagggttaatagtgttttaccctgtaatataagctatttctggttttcc 178  Q
    |||||||||| ||| ||||||||||||||||||  |||| |||||||||    
T  30728980 aagggttaatggtgctttaccctgtaatataagtcatttttggttttcc 30728932  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 2985697 - 2985753
Alignment:
Q  266 aatttgagcaaatttccgttaatcttttgccatatctttgattttgtacagttaaaa 322  Q
    |||||||||||||||| ||| ||| | ||||||||| | ||||||||||||| ||||    
T  2985697 aatttgagcaaatttcggtttatcctctgccatatcatcgattttgtacagtcaaaa 2985753  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 20078353 - 20078404
Alignment:
Q  128 taaagggttaatagtgttttac--cctgtaatataagctatttctggttttc 177  Q
    ||||||||||||||||||||||  |||| |||||||| ||||| ||||||||    
T  20078353 taaagggttaatagtgttttacctcctgcaatataagttatttttggttttc 20078404  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 26932586 - 26932534
Alignment:
Q  126 attaaagggttaatagtgttttaccc-tgtaatataagctatttctggttttc 177  Q
    |||||||||||||||||||||||||| ||||||||| |  ||||| |||||||    
T  26932586 attaaagggttaatagtgttttacccttgtaatataggtcatttccggttttc 26932534  T

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