View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14687_high_4 (Length: 254)
Name: NF14687_high_4
Description: NF14687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14687_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 39296785 - 39297024
Alignment:
| Q |
1 |
ttcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaatttgtgtgttcctatcata |
100 |
Q |
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| T |
39296785 |
ttcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaatttgtgtgttcctatcata |
39296884 |
T |
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| Q |
101 |
tctcttgcagaaaagtaaggctgatgtgtatttgatttgggtggctaaagatattgaactgaactttggaaatgagataaaggaaatggtagagaaatat |
200 |
Q |
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| T |
39296885 |
tctcttgcagaaaagtaaggctgatgtgtatttgatttgggtggctaaagatattgaactgaactttggaaatgagataaaggaaatggtagagaaatat |
39296984 |
T |
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| Q |
201 |
cccaaggacaaaattattgttcatgatactgttgtctctg |
240 |
Q |
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| T |
39296985 |
cccaaggacaaaattattgttcatgatactgttgtttctg |
39297024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 39289905 - 39290144
Alignment:
| Q |
1 |
ttcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaatttgtgtgttcctatcata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
39289905 |
ttcgttcagttcattttgctggattaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctgggatttgtgtgttcttatcatt |
39290004 |
T |
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| Q |
101 |
tctcttgcagaaaagtaaggctgatgtgtatttgatttgggtggctaaagatattgaactgaactttggaaatgagataaaggaaatggtagagaaatat |
200 |
Q |
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| T |
39290005 |
tctgttgcagaaaaataaggctgatgtgtgcttgatttgggtggctaaagatattgaaatgaactttggaaaagagataaaggaattggtggagaaatat |
39290104 |
T |
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| Q |
201 |
cccaaggacaaaattattgttcatgatactgttgtctctg |
240 |
Q |
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| T |
39290105 |
tccgaggacaaaatcattgttcatgatactgctgtttctg |
39290144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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