View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14687_low_1 (Length: 587)
Name: NF14687_low_1
Description: NF14687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14687_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 9661081 - 9660786
Alignment:
| Q |
20 |
cttcatcaatgtagcaatggcttagatagactgactgcgacgacaataaggaattttgactgctgagaatccgcgacgacaataaggatttttgactgct |
119 |
Q |
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| T |
9661081 |
cttcatcaatgtagcaatggcttagatagactgactgcgacgacaataaggaattttgactgctgagaatccgcgacgacaataaggatttttgactgct |
9660982 |
T |
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| Q |
120 |
gagaatccgaattgaaagttgtggaaaacaagttccctgcaattagtgatctcagttgtttataaagatcgaatgattgaggtttcgagtttctgacttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9660981 |
gagaatccgaattgaaagttgtggaaaacaagttccctgcaattagtgatctcagttgtttataaagatcgaatgattgaggtttcgagtttctgacttg |
9660882 |
T |
|
| Q |
220 |
tcaaaaatcatgatgtgagtcattcgatatctatcaacaaaatacatgactttgataacattctgaggtgcaacacaaatagtaaaaagcattcaga |
316 |
Q |
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| T |
9660881 |
tc-aaaatcatgatgtgagtcattcgatatctatcaacaaaatacatgactttgataacattctgaggtgcaacacaaatagtaaaaagcattcaga |
9660786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 316 - 574
Target Start/End: Complemental strand, 9660258 - 9659990
Alignment:
| Q |
316 |
atgccagtttttggaagagtcctattcacggagggctctgcaattttagttcaatattttttggttgctattggtattctaattctaagtgccatttcaa |
415 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9660258 |
atgccagtttttggaagagtcctattcatggagtgctctgcaattttagttcaatattttttggttgctattggtattctaattctaagtgccatttcga |
9660159 |
T |
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| Q |
416 |
tggccgagtgtagtaaattttactgttattaagtgatgtggactaatataatgggtttttgtttttaacactcactttggaattttcatataaaaaattc |
515 |
Q |
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| T |
9660158 |
tggccgagtgtagtaaattttactgttattaagtggtgtggactaatataatgggtttttgtttttaacactcactttggaattttcatataaaaaatgc |
9660059 |
T |
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| Q |
516 |
ttcta----------tgtttccagattttgtaaccatttcaatgagttaggagccactttgttcttttc |
574 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9660058 |
ttttatatttggtattgtttccagattttgtaaccatttcaatgagttaggagccactttgttcttttc |
9659990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 134 - 316
Target Start/End: Complemental strand, 9676534 - 9676353
Alignment:
| Q |
134 |
aaagttgtggaaaacaagttccctgcaattagtgatctcagttgtttataaagatcgaatgattgaggtttcgagtttctgacttgtcaaaaatcatgat |
233 |
Q |
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|||||||||||||| ||||||||||||||||| |||||| ||||||||| |||| ||||||||||| |||| ||||||||| | |||||| ||||||| |
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| T |
9676534 |
aaagttgtggaaaaagagttccctgcaattagttatctcaattgtttatatagattgaatgattgagatttcaagtttctgattggtcaaag-tcatgat |
9676436 |
T |
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| Q |
234 |
gtgagtcattcgatatctatcaacaaaatacatgactttgataacattctgaggtgcaacacaaatagtaaaaagcattcaga |
316 |
Q |
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| T |
9676435 |
gtgagtcattcgatatctatcaacaaaatacatgattttgataacattctgaggtgcaacacaaatagtaaaaagcattcaga |
9676353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 177 - 316
Target Start/End: Complemental strand, 12107443 - 12107306
Alignment:
| Q |
177 |
gtttataaagatcgaatgattgaggtttcgagtttctgacttgtcaaaaatcatgatgtgagtcattcgatatctatcaacaaaatacatgactttgata |
276 |
Q |
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|||||||||||| |||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12107443 |
gtttataaagattgaatgattgaggtttcgagtttgtcacttgtcaaaa-tcatgatgtgagtcattcgatatctatcaacaaaatacatgactttgata |
12107345 |
T |
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| Q |
277 |
acattctgaggtgcaacacaaatagtaaaaagcattcaga |
316 |
Q |
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| T |
12107344 |
tcattctgaggtgcaacac-aatagtaaaaagcattcaga |
12107306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 130 - 281
Target Start/End: Complemental strand, 9678036 - 9677890
Alignment:
| Q |
130 |
attgaaagttgtggaaaacaagttccctgcaattagtgatctcagttgtttataaagatcgaatgattgaggtttcgagtttctgacttgtcaaaaatca |
229 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||||| || ||| ||| ||| |
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| T |
9678036 |
attgaaagttgtggaaaacgagttccttgcaattagtgatctca---gtttataaagatcgaatgattgagattacgagtttttg--ttggtcaaagtca |
9677942 |
T |
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| Q |
230 |
tgatgtgagtcattcgatatctatcaacaaaatacatgactttgataacatt |
281 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9677941 |
tgatgcgagtcattcgatatctattaacaaaatacatgactttgataacatt |
9677890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 10102894 - 10102949
Alignment:
| Q |
321 |
agtttttggaagagtcctattcacggagggctctgcaattttagttcaatattttt |
376 |
Q |
| |
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|||||||||||||||||| |||| ||||||||||||| ||||||||||||||||| |
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| T |
10102894 |
agtttttggaagagtcctcttcattgagggctctgcaaatttagttcaatattttt |
10102949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 13856106 - 13856160
Alignment:
| Q |
321 |
agtttttggaagagtcctattcacggagggctctgcaattttagttcaatatttt |
375 |
Q |
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||||||||| |||||||| ||||| ||||||| |||||||||||||||||||||| |
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| T |
13856106 |
agtttttgggagagtcctcttcacagagggctttgcaattttagttcaatatttt |
13856160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 10109391 - 10109445
Alignment:
| Q |
321 |
agtttttggaagagtcctattcacggagggctctgcaattttagttcaatatttt |
375 |
Q |
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|||||||||||||||||| || | |||||||||||||||||||||| ||| |||| |
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| T |
10109391 |
agtttttggaagagtcctctttatggagggctctgcaattttagttaaatttttt |
10109445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 10212298 - 10212244
Alignment:
| Q |
321 |
agtttttggaagagtcctattcacggagggctctgcaattttagttcaatatttt |
375 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||||||||||| ||||||||| |
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| T |
10212298 |
agtttttggaagagtcctcctcaccgaaggctctgcaattttagtacaatatttt |
10212244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 10209747 - 10209698
Alignment:
| Q |
321 |
agtttttggaagagtcctattcacggagggctctgcaattttagttcaat |
370 |
Q |
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| T |
10209747 |
agtttttggaagagttctctttatggagggctctgcaattttagttcaat |
10209698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 376
Target Start/End: Original strand, 10105978 - 10106033
Alignment:
| Q |
321 |
agtttttggaagagtcctattcacggagggctctgcaattttagttcaatattttt |
376 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||||| ||||||||||| ||||| |
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| T |
10105978 |
agtttttggaagagtcctctttattgagggctctgcaaatttagttcaattttttt |
10106033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 375
Target Start/End: Complemental strand, 10215904 - 10215876
Alignment:
| Q |
347 |
agggctctgcaattttagttcaatatttt |
375 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10215904 |
agggctctgcaattttagttcaatatttt |
10215876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 45152083 - 45152128
Alignment:
| Q |
321 |
agtttttggaagagtcctattcacggagggctctgcaattttagtt |
366 |
Q |
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|||||||||||||||||| || ||||||||||||||||| |||||| |
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| T |
45152083 |
agtttttggaagagtcctctttacggagggctctgcaatattagtt |
45152128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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