View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14687_low_3 (Length: 346)
Name: NF14687_low_3
Description: NF14687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14687_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 3784 - 4104
Alignment:
| Q |
19 |
atttcctctcatgggtttgaggatctggaatgaacaaagtaaagtttcatcgacgcacatgagtgcacctgcattattgaactctccacaataatttggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3784 |
atttcctctcatgggtttgaggatctggaatgaacaaagtaaagtttcatcgacgcacatgagtgcacctgcattattgaactctccacaataatttggt |
3883 |
T |
|
| Q |
119 |
gctgaaaatattgtaactagttgtctgtctgcgaagaattggtagccgtcttcaacaacctgtatgagtaaatttacaataagtttgtttagtttattca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3884 |
gctgaaaatattgtaactagttgtctgtctgcgaagaattggtagccgtcttcaacaacctgtatgagtaaatttacaataagtttgtttagtttattca |
3983 |
T |
|
| Q |
219 |
ataatggataaatgaatgaatgatcaatgtgtagtgtagtagtgaataacaaaattaacctgatgagcccgacatataagatcgagatcgnnnnnnnnca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3984 |
ataatggataaatgaatgaatgatcaatgtgtagtgtagtggtgaataacaaaattaacctgatgagcccgacatataagatcgagatcgtttttcttca |
4083 |
T |
|
| Q |
319 |
agaactcatctaccgtctctg |
339 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
4084 |
agaactcatctaccgtgtctg |
4104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 34787614 - 34787568
Alignment:
| Q |
104 |
ccacaataatttggtgctgaaaatattgtaactagttgtctgtctgc |
150 |
Q |
| |
|
||||| || ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
34787614 |
ccacagtagtttggagctgaaaatattgtaacaagttgtctgtctgc |
34787568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University