View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14688_high_13 (Length: 229)

Name: NF14688_high_13
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14688_high_13
NF14688_high_13
[»] chr3 (2 HSPs)
chr3 (7-229)||(42246177-42246399)
chr3 (16-100)||(31071721-31071805)
[»] scaffold0867 (1 HSPs)
scaffold0867 (13-229)||(430-646)
[»] chr7 (1 HSPs)
chr7 (13-229)||(22243792-22244008)
[»] chr1 (1 HSPs)
chr1 (26-100)||(19991878-19991952)
[»] chr8 (3 HSPs)
chr8 (16-103)||(5187905-5187992)
chr8 (152-223)||(9680262-9680333)
chr8 (152-229)||(5188041-5188118)
[»] chr5 (1 HSPs)
chr5 (152-224)||(19697877-19697949)
[»] chr4 (2 HSPs)
chr4 (152-224)||(32603460-32603532)
chr4 (26-100)||(23562955-23563029)
[»] chr6 (1 HSPs)
chr6 (186-224)||(19792863-19792901)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 42246177 - 42246399
Alignment:
Q  7 cttattgggttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaactattaaaat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42246177 cttattgggttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaattattaaaat 42246276  T
Q  107 gaaaaagttgtatatgcatcggttgtgaatataccaaattaaaggaagatttcaaccgaaggataatgaagttgtgatgcaatcatggctcaacatttga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42246277 gaaaaagttgtatatgcatcggttgtgaatataccaaattaaaggaagatttcaaccgaaggataatgaagttgtgatgcaatcatggctcaacatttga 42246376  T
Q  207 aaggatccaattgttggggttga 229  Q
    |||||||||||||||||||||||    
T  42246377 aaggatccaattgttggggttga 42246399  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 31071721 - 31071805
Alignment:
Q  16 ttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaactat 100  Q
    ||||||| | ||||||||||||||||||||||||||||||| |   ||||||| ||| || |||||||| |||||||||||||||    
T  31071721 ttcaaattggtaatagtggtgtgcaatcatatgatcaagagactccaacaccaaaatcttgcactcaaggtggcttggaaactat 31071805  T

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Target: scaffold0867 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 430 - 646
Alignment:
Q  13 gggttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaactattaa----aatga 108  Q
    |||||||||| | || |||||||||||||| | ||||||||||||   |||||||| || ||| |||||||| ||||||||||||||||||    |||||    
T  430 gggttcaaatgggtagtagtggtgtgcaattaaatgatcaagagcttgaaacaccacaagtttgcactcaaggtggcttggaaactattaaccttaatga 529  T
Q  109 aaaagttgtatatgcatcggttgtgaatataccaaattaaaggaagatttcaaccgaaggataatgaagttgtgatgcaatcatggctcaacatttgaaa 208  Q
    | |||||  |  | ||||||||| |||||   ||    |||| |||||||||||| |||||  ||||| || | || ||||||||||| || |||| |||    
T  530 agaagttagaactacatcggttgcgaatacttca----aaagtaagatttcaaccaaaggaggatgaacttctcattcaatcatggcttaatatttcaaa 625  T
Q  209 ggatccaattgttggggttga 229  Q
    |||||||||||||||| ||||    
T  626 ggatccaattgttgggattga 646  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 22243792 - 22244008
Alignment:
Q  13 gggttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaactattaa----aatga 108  Q
    |||||||||| | || |||||||||||||| | ||||||||||||   |||||||| || ||| |||||||| ||||||||||||||||||    |||||    
T  22243792 gggttcaaatgggtagtagtggtgtgcaattaaatgatcaagagcttgaaacaccacaagtttgcactcaaggtggcttggaaactattaaccttaatga 22243891  T
Q  109 aaaagttgtatatgcatcggttgtgaatataccaaattaaaggaagatttcaaccgaaggataatgaagttgtgatgcaatcatggctcaacatttgaaa 208  Q
    | |||||  |  | ||||||||| |||||   ||    |||| |||||||||||| |||||  ||||| || | || ||||||||||| || |||| |||    
T  22243892 agaagttagaactacatcggttgcgaatacttca----aaagtaagatttcaaccaaaggaggatgaacttctcattcaatcatggcttaatatttcaaa 22243987  T
Q  209 ggatccaattgttggggttga 229  Q
    |||||||||||||||| ||||    
T  22243988 ggatccaattgttgggattga 22244008  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 19991878 - 19991952
Alignment:
Q  26 taatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaactat 100  Q
    |||| |||||||||||||| ||||||||||| | | ||||||| ||| || |||||||| |||||||||||||||    
T  19991878 taatggtggtgtgcaatcaaatgatcaagagacttcaacaccaaaatcttgcactcaaggtggcttggaaactat 19991952  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 5187905 - 5187992
Alignment:
Q  16 ttcaaatagataatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaactattaa 103  Q
    ||||||| | || |||||||||||||| | ||||||||||||   ||||| || || ||| |||||||| ||||||||||||||||||    
T  5187905 ttcaaatgggtagtagtggtgtgcaattaaatgatcaagagcttgaaacatcacaagtttgcactcaaggtggcttggaaactattaa 5187992  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 9680262 - 9680333
Alignment:
Q  152 aagatttcaaccgaaggataatgaagttgtgatgcaatcatggctcaacatttgaaaggatccaattgttgg 223  Q
    |||||||||||| |||||  ||||| || | || |||||||||||||| |||| ||||||||||||||||||    
T  9680262 aagatttcaaccaaaggaggatgaacttctcattcaatcatggctcaatatttcaaaggatccaattgttgg 9680333  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 5188041 - 5188118
Alignment:
Q  152 aagatttcaaccgaaggataatgaagttgtgatgcaatcatggctcaacatttgaaaggatccaattgttggggttga 229  Q
    |||||||||||| |||||  ||||| || | || |||||||||||||| |||| ||| ||||| ||||||||| ||||    
T  5188041 aagatttcaaccaaaggaggatgaacttctcattcaatcatggctcaatatttcaaaagatccgattgttgggattga 5188118  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 19697949 - 19697877
Alignment:
Q  152 aagatttcaaccgaaggataatgaagttgtgatgcaatcatggctcaacatttgaaaggatccaattgttggg 224  Q
    |||||||||||| || ||  ||||| || | || |||||||||||||| |||| |||||||||||||||||||    
T  19697949 aagatttcaaccaaaagaggatgaacttctcattcaatcatggctcaatatttcaaaggatccaattgttggg 19697877  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 32603532 - 32603460
Alignment:
Q  152 aagatttcaaccgaaggataatgaagttgtgatgcaatcatggctcaacatttgaaaggatccaattgttggg 224  Q
    |||||||||||| || ||  ||||| || | || |||||||||||||| |||| |||||||||||||||||||    
T  32603532 aagatttcaaccaaaagaggatgaacttctcattcaatcatggctcaatatttcaaaggatccaattgttggg 32603460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 23563029 - 23562955
Alignment:
Q  26 taatagtggtgtgcaatcatatgatcaagagccctaaacaccataatttttcactcaagatggcttggaaactat 100  Q
    |||| |||||||||||||| ||||||||||| | | ||||||  ||| || |||||||| |||||||||| ||||    
T  23563029 taatggtggtgtgcaatcaaatgatcaagagacttcaacacctaaatcttgcactcaaggtggcttggaatctat 23562955  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 19792901 - 19792863
Alignment:
Q  186 caatcatggctcaacatttgaaaggatccaattgttggg 224  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  19792901 caatcatggctcaatatttcaaaggatccaattgttggg 19792863  T

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