View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14688_high_2 (Length: 469)
Name: NF14688_high_2
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14688_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 6 - 300
Target Start/End: Complemental strand, 6409695 - 6409403
Alignment:
| Q |
6 |
gaatctggatcgctatcttcaaccacatcattttcttgaactcccacatcctcaacaatattattttcttcaacagccacataagtagcatcaacaacca |
105 |
Q |
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| T |
6409695 |
gaatctgcatcgctatcttcaaccacctcatttttttgaactcccacatcctgaacaatattattttcttcaagagccacgtaagtagcatcaacaacca |
6409596 |
T |
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| Q |
106 |
cttcatcaacatttcttggctcctatattttagattcaacataaacatgcactttataaccattgtgtttaccagtgttagaagacaaccactaatcatc |
205 |
Q |
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| T |
6409595 |
cttcatcaacatttcttggctc-tatattttagattcaacgtaaacatgcactttataaccattgtgtttaccagtgttagaagacaaccactactcatc |
6409497 |
T |
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| Q |
206 |
aaccaattcaatttagtcattgcactcggaaaccaactaatatatgttgttgtaattttttcacaatttttaaggatgaacctaattgtagtgtc |
300 |
Q |
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| T |
6409496 |
aaccaattcaatttaggcatcactctcggaaaccaactaatatatgttgttgtaat-ttttcacaatttttaaggatggatctaattgtagtgtc |
6409403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 362 - 455
Target Start/End: Complemental strand, 6408981 - 6408888
Alignment:
| Q |
362 |
gaaaacactctatctagtggtattgtattatagtataatattagtgtaacattttctctttaatggattgaaagagcttgtgtggtcaactatt |
455 |
Q |
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|||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
6408981 |
gaaaacactccatccaatggtattgtattatagtttaatattagtgtaacattttctctttaatggattgaaagggtttgtgtggtcaactatt |
6408888 |
T |
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