View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14688_high_3 (Length: 441)

Name: NF14688_high_3
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14688_high_3
NF14688_high_3
[»] chr4 (18 HSPs)
chr4 (293-410)||(46550706-46550823)
chr4 (293-400)||(17056615-17056722)
chr4 (293-407)||(47541809-47541925)
chr4 (1-60)||(33878719-33878778)
chr4 (293-400)||(41464802-41464911)
chr4 (293-400)||(52920087-52920197)
chr4 (106-160)||(33878620-33878674)
chr4 (300-395)||(15827131-15827229)
chr4 (293-391)||(47833504-47833603)
chr4 (111-161)||(33879203-33879253)
chr4 (211-261)||(46550626-46550676)
chr4 (293-401)||(36364868-36364972)
chr4 (293-400)||(39503504-39503615)
chr4 (293-400)||(20679841-20679951)
chr4 (303-388)||(46381481-46381568)
chr4 (215-261)||(47541735-47541781)
chr4 (217-259)||(47732466-47732508)
chr4 (293-365)||(42969971-42970043)
[»] chr1 (16 HSPs)
chr1 (293-400)||(16253029-16253136)
chr1 (293-400)||(24241478-24241585)
chr1 (293-400)||(41942781-41942888)
chr1 (293-400)||(21356794-21356901)
chr1 (293-400)||(34773420-34773528)
chr1 (293-400)||(39744169-39744276)
chr1 (302-406)||(38746028-38746133)
chr1 (293-400)||(2344969-2345077)
chr1 (322-400)||(48503922-48504000)
chr1 (208-261)||(24241614-24241667)
chr1 (215-259)||(34773345-34773389)
chr1 (298-400)||(7101359-7101464)
chr1 (217-258)||(38745959-38746000)
chr1 (217-257)||(8971569-8971609)
chr1 (217-261)||(41942916-41942960)
chr1 (217-261)||(16253166-16253210)
[»] chr3 (18 HSPs)
chr3 (293-400)||(44880254-44880361)
chr3 (293-404)||(1994850-1994961)
chr3 (293-400)||(22220210-22220318)
chr3 (293-399)||(2008400-2008508)
chr3 (293-405)||(22831174-22831286)
chr3 (293-400)||(39056875-39056981)
chr3 (1-60)||(49851310-49851369)
chr3 (217-261)||(25199079-25199123)
chr3 (324-400)||(26466362-26466438)
chr3 (217-260)||(22220346-22220389)
chr3 (106-160)||(49851417-49851471)
chr3 (111-160)||(49850835-49850884)
chr3 (216-260)||(2008537-2008581)
chr3 (218-258)||(22831103-22831143)
chr3 (293-380)||(28297695-28297782)
chr3 (211-261)||(45805449-45805499)
chr3 (343-400)||(45805583-45805640)
chr3 (216-261)||(1994780-1994825)
[»] chr7 (14 HSPs)
chr7 (293-404)||(8541427-8541539)
chr7 (293-400)||(34998528-34998637)
chr7 (293-400)||(10544991-10545100)
chr7 (15-60)||(29735616-29735661)
chr7 (321-400)||(39187986-39188065)
chr7 (293-400)||(45627414-45627524)
chr7 (343-395)||(32676800-32676852)
chr7 (354-410)||(15878797-15878853)
chr7 (215-261)||(8541565-8541611)
chr7 (106-153)||(29735710-29735759)
chr7 (111-160)||(29735117-29735166)
chr7 (217-261)||(30783412-30783456)
chr7 (217-261)||(34998665-34998709)
chr7 (293-352)||(40076693-40076753)
[»] chr8 (21 HSPs)
chr8 (293-404)||(42056676-42056787)
chr8 (216-412)||(30208187-30208380)
chr8 (305-404)||(39402038-39402140)
chr8 (293-405)||(5594779-5594891)
chr8 (293-399)||(1162117-1162222)
chr8 (293-400)||(40719895-40720005)
chr8 (293-405)||(35179155-35179268)
chr8 (4-60)||(38460526-38460582)
chr8 (293-403)||(31333162-31333273)
chr8 (293-382)||(42921385-42921474)
chr8 (111-160)||(38460880-38460929)
chr8 (106-160)||(38460427-38460481)
chr8 (218-258)||(5594922-5594962)
chr8 (293-356)||(30362018-30362082)
chr8 (300-400)||(36132676-36132776)
chr8 (217-261)||(39401955-39401999)
chr8 (217-261)||(40719821-40719865)
chr8 (215-261)||(1162043-1162089)
chr8 (217-261)||(34173559-34173603)
chr8 (217-261)||(34514581-34514625)
chr8 (214-261)||(35179296-35179341)
[»] chr5 (26 HSPs)
chr5 (293-400)||(33758794-33758901)
chr5 (299-381)||(23151436-23151518)
chr5 (293-405)||(2976446-2976556)
chr5 (1-60)||(13869339-13869398)
chr5 (293-391)||(34849451-34849550)
chr5 (293-390)||(30319817-30319915)
chr5 (293-400)||(20524604-20524711)
chr5 (1-60)||(27640973-27641032)
chr5 (293-400)||(10719746-10719854)
chr5 (293-380)||(37872201-37872291)
chr5 (106-156)||(13869240-13869290)
chr5 (106-156)||(27640875-27640925)
chr5 (363-403)||(37872302-37872342)
chr5 (111-160)||(13869825-13869874)
chr5 (295-407)||(8026460-8026577)
chr5 (293-392)||(3454259-3454358)
chr5 (216-259)||(36442660-36442703)
chr5 (293-351)||(42285218-42285277)
chr5 (111-160)||(27641429-27641478)
chr5 (217-261)||(10719883-10719927)
chr5 (214-261)||(3454387-3454434)
chr5 (215-261)||(16778273-16778319)
chr5 (218-260)||(21239003-21239045)
chr5 (217-258)||(20654461-20654502)
chr5 (217-261)||(23145929-23145973)
chr5 (217-261)||(37872129-37872173)
[»] chr2 (16 HSPs)
chr2 (293-400)||(3870024-3870135)
chr2 (293-400)||(11028779-11028887)
chr2 (307-400)||(36400857-36400952)
chr2 (293-406)||(28734070-28734183)
chr2 (293-400)||(37721449-37721557)
chr2 (293-400)||(38879517-38879625)
chr2 (293-400)||(3647418-3647526)
chr2 (217-261)||(3870164-3870208)
chr2 (293-399)||(30706149-30706258)
chr2 (217-261)||(34480055-34480099)
chr2 (293-400)||(6512079-6512191)
chr2 (217-260)||(36400993-36401036)
chr2 (293-354)||(3949317-3949378)
chr2 (217-261)||(30706078-30706122)
chr2 (216-261)||(37721585-37721630)
chr2 (217-261)||(9009119-9009163)
[»] scaffold0095 (2 HSPs)
scaffold0095 (305-404)||(35362-35464)
scaffold0095 (217-261)||(35503-35547)
[»] chr6 (4 HSPs)
chr6 (293-400)||(2141240-2141348)
chr6 (293-405)||(7080148-7080262)
chr6 (306-400)||(25336928-25337023)
chr6 (219-259)||(17852650-17852690)
[»] scaffold0386 (3 HSPs)
scaffold0386 (1-60)||(1175-1234)
scaffold0386 (106-160)||(1279-1333)
scaffold0386 (111-161)||(691-741)
[»] scaffold0288 (2 HSPs)
scaffold0288 (321-400)||(18084-18163)
scaffold0288 (217-261)||(17977-18022)
[»] scaffold0009 (1 HSPs)
scaffold0009 (321-408)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (293-400)||(57-165)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 293 - 410
Target Start/End: Original strand, 46550706 - 46550823
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  46550706 aataataaagagaaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtatgtgtttaaacattattgatttggtcttgtgaccatg 46550805  T
Q  393 gaagaatatctccttatt 410  Q
    ||||||||| || |||||    
T  46550806 gaagaatatttcattatt 46550823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 17056722 - 17056615
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt-tatgtgtgtattcaaacattattgatttggtcttgtgaccat 391  Q
    ||||||||||||||||||||||||||  |||||| |||||||  |||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||    
T  17056722 aataataaagaggaaattgataaaaaa-atgattaaatattttaaggacaattttttatatgtgtgtattcaaacactattgatttggtcttgtgaccat 17056624  T
Q  392 ggaagaata 400  Q
    |||||||||    
T  17056623 ggaagaata 17056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 407
Target Start/End: Original strand, 47541809 - 47541925
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacca 390  Q
    ||||||||  |||||||||||||||| ||||||||||||||| ||||| ||||||||||  ||||||| | |||| |||||||||||| |||||||| ||    
T  47541809 aataataagaaggaaattgataaaaaagatgattgaatattttgaggaaaatctttttatgtgtgtgtgtccaaatattattgatttgatcttgtgatca 47541908  T
Q  391 tggaagaatatctcctt 407  Q
    || ||||||||||||||    
T  47541909 tgaaagaatatctcctt 47541925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33878778 - 33878719
Alignment:
Q  1 aagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33878778 aagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 33878719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 41464802 - 41464911
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 390  Q
    ||||||||||| |||||||||||||| ||||||||| ||||| || |||||||||||||||||||||  || ||  |||||||||||| |||||||||||    
T  41464802 aataataaagaagaaattgataaaaaagatgattgagtattttgaagagaatctttttatgtgtgtatgtttaagtattattgatttgatcttgtgacca 41464901  T
Q  391 tggaagaata 400  Q
    || |||||||    
T  41464902 tgaaagaata 41464911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 52920087 - 52920197
Alignment:
Q  293 aataataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacc 389  Q
    |||||||||||| |||||||| |||||  ||||||||||||||  | |  ||||||||||  | | |||||| |||||||||||||||||||||||||||    
T  52920087 aataataaagagaaaattgataaaaaaaaatgattgaatatttttaagtaaatctttttatttatatgtatttaaacattattgatttggtcttgtgacc 52920186  T
Q  390 atggaagaata 400  Q
    |||||||||||    
T  52920187 atggaagaata 52920197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 33878674 - 33878620
Alignment:
Q  106 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 160  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  33878674 tgacctgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgtttc 33878620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 300 - 395
Target Start/End: Original strand, 15827131 - 15827229
Alignment:
Q  300 aagaggaaattgat-aaaaatgatgattgaatatttagaggagaatctttttatgtg--tgtattcaaacattattgatttggtcttgtgaccatggaa 395  Q
    ||||| |||||||| |||||  || ||||||||||| ||  ||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||    
T  15827131 aagagaaaattgatgaaaaaaaataattgaatattttgacaagaatctttttatgtgtgtgtattcaaatattattgattcggtcttgtgaccatggaa 15827229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 391
Target Start/End: Complemental strand, 47833603 - 47833504
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 390  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||   ||||||||||||||||  | ||| || ||| |||||||||||| |||||    
T  47833603 aataataaagaggaaattgataaaa-taatgattgaatattttgaggatggtctttttatgtgtgtatgtccaaccactatagatttggtcttgcgacca 47833505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 33879203 - 33879253
Alignment:
Q  111 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttcc 161  Q
    ||||| ||||||||||||||||||||| || ||||||||||||||||||||    
T  33879203 tgtcacgatttcattggatgtttgtaagtgccacatgttatgtacgtttcc 33879253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 46550626 - 46550676
Alignment:
Q  211 ttctatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    ||||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  46550626 ttctaagagaaattctaatatggtcacaagaccaaagaaaaagtgtttggt 46550676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 401
Target Start/End: Original strand, 36364868 - 36364972
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||| ||||||| |||||||||||||| ||||    ||||||  ||||  || ||||||| ||||| | ||||||||||||||||||||||| |||||||    
T  36364868 aatagtaaagagaaaattgataaaaataatga----atattttaaggaccatatttttatatgtgtgtccaaacattattgatttggtcttgcgaccatg 36364963  T
Q  393 gaagaatat 401  Q
     || |||||    
T  36364964 caacaatat 36364972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 39503504 - 39503615
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatga--ttgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgac 388  Q
    ||||||||||||||||||||||||||  |  |  || |||||||  | ||  ||||||||||||||  || |||||||| ||||||||| ||||||||||    
T  39503504 aataataaagaggaaattgataaaaaaaaaaaaattaaatattttaaagatcatctttttatgtgtatgtgttcaaacactattgatttagtcttgtgac 39503603  T
Q  389 catggaagaata 400  Q
    ||| ||||||||    
T  39503604 catagaagaata 39503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 20679841 - 20679951
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt---tatgtgtgtattcaaacattattgatttggtcttgtgacc 389  Q
    ||||||||||||||||||||||||||  || |||||||||||  | ||  || ||||   | ||||||| | |||||| |||||||||| ||||| ||||    
T  20679841 aataataaagaggaaattgataaaaaaaataattgaatattttaaagaccattttttttatgtgtgtgtgtccaaacactattgatttgatcttgagacc 20679940  T
Q  390 atggaagaata 400  Q
    ||| |||||||    
T  20679941 atgaaagaata 20679951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 46381568 - 46381481
Alignment:
Q  303 aggaaattgataaaaatgatgattgaatatttagaggagaatctttttatg--tgtgtattcaaacattattgatttggtcttgtgac 388  Q
    ||||||||||||||||  |||||||||| |||  |||| ||||| ||||||  |||||  ||||||| |||| |||||||||||||||    
T  46381568 aggaaattgataaaaaaaatgattgaatgtttttaggataatctctttatgtatgtgtgctcaaacactatttatttggtcttgtgac 46381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 47541735 - 47541781
Alignment:
Q  215 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||||| ||||||||||||  || |||||||||||||||||||    
T  47541735 atgagaaattctaatatggtcacgagatcaaagaaaaagtgtttggt 47541781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 47732508 - 47732466
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttg 259  Q
    |||||||| |||||||||||||||| |||||||||| ||||||    
T  47732508 gagaaattctaatatggtcacaggatcaaagaaaaattgtttg 47732466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 42970043 - 42969971
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaa 365  Q
    |||||||||||  |||||||||||||  | ||||||||||||  |||| |||||||||||  |||| ||||||    
T  42970043 aataataaagataaaattgataaaaaaaaagattgaatattttaaggataatctttttatacgtgtgttcaaa 42969971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 16253136 - 16253029
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||    
T  16253136 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtctccaaacattattgatttggtcttgtgaacatg 16253037  T
Q  393 gaagaata 400  Q
    ||||||||    
T  16253036 gaagaata 16253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 24241585 - 24241478
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  24241585 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtcatgtgaccatg 24241486  T
Q  393 gaagaata 400  Q
    ||||||||    
T  24241485 gaagaata 24241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 41942888 - 41942781
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  41942888 aataataaggaggaaattgataaaaatgatgattgaatatttcgaagagaatctttttatgtatgtgtccaaacattattgatttggtcttgtgaccatg 41942789  T
Q  393 gaagaata 400  Q
     |||||||    
T  41942788 aaagaata 41942781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 21356901 - 21356794
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| || |||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  21356901 aataataatgagaaaattgataaaaaagatgattgaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 21356802  T
Q  393 gaagaata 400  Q
     |||||||    
T  21356801 aaagaata 21356794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 34773420 - 34773528
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 390  Q
    ||||||||| |||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||  | ||||||||||||| |||||||||||| ||    
T  34773420 aataataaa-aggaaattaataaaaaatatgattgaatattttgaggagaatctttttatgtgtgtatgtgcaaacattattgagttggtcttgtgatca 34773518  T
Q  391 tggaagaata 400  Q
    ||||||||||    
T  34773519 tggaagaata 34773528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 39744169 - 39744276
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||||||| ||||||| |||||||||  |||||||| ||||  ||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  39744169 aataataaggaggaaaatgataaaaaaaatgattgactattctgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 39744268  T
Q  393 gaagaata 400  Q
    ||||||||    
T  39744269 gaagaata 39744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 302 - 406
Target Start/End: Original strand, 38746028 - 38746133
Alignment:
Q  302 gaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat-tcaaacattattgatttggtcttgtgaccatggaagaata 400  Q
    ||||||||||| || || ||||||||||||||| ||||||||||| |||||| |||| | || || |||||||||||||||||||||| ||||||||||     
T  38746028 gaggaaattgaaaacaaagatgattgaatattttgaggagaatctatttatgggtgtgtgtccaaaattattgatttggtcttgtgacgatggaagaatg 38746127  T
Q  401 tctcct 406  Q
    ||||||    
T  38746128 tctcct 38746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 2345077 - 2344969
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 390  Q
    ||||| || ||||||||||||||||| ||||||||||| |||  | || ||| ||||||||||||  ||| |||||||||||||||||||||||||||||    
T  2345077 aataagaaggaggaaattgataaaaaagatgattgaattttttaaagaaaat-tttttatgtgtgcttatccaaacattattgatttggtcttgtgacca 2344979  T
Q  391 tggaagaata 400  Q
     |||||||||    
T  2344978 aggaagaata 2344969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 322 - 400
Target Start/End: Complemental strand, 48504000 - 48503922
Alignment:
Q  322 tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 400  Q
    ||||||| ||||| || ||||||| |||||| ||||| | |||| ||||||||||||||||| ||| ||||||||||||    
T  48504000 tgattgagtattttgatgagaatccttttatatgtgtgtccaaatattattgatttggtcttatgaacatggaagaata 48503922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 24241667 - 24241614
Alignment:
Q  208 ttattctatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||| ||||||    
T  24241667 ttattataagagaaattctaatatggtcacaggaccaaagaaaaagtatttggt 24241614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 34773345 - 34773389
Alignment:
Q  215 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttg 259  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  34773345 atgagaaattctaatatggttacaggaccaaagaaaaagtgtttg 34773389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 7101359 - 7101464
Alignment:
Q  298 taaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat----tcaaacattattgatttggtcttgtgaccatgg 393  Q
    ||||||||||||||||||||   ||||||||||||||  ||||  |||||||||||||||| |    || |||| ||||||||||||||| ||| |||||    
T  7101359 taaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgttccaacactattgatttggtcttatgatcatgg 7101457  T
Q  394 aagaata 400  Q
     ||||||    
T  7101458 gagaata 7101464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 38745959 - 38746000
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgttt 258  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  38745959 gagaaattttaatatggtcacacggccaaagaaaaagtgttt 38746000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 8971609 - 8971569
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtt 257  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  8971609 gagaaattctaatatggtcacaggaccaaaaaaaaagtgtt 8971569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 41942960 - 41942916
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||    
T  41942960 gagaaattctaatatggtcacacgaccaaagataaagtgtttggt 41942916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 16253210 - 16253166
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||| ||||||| ||||| || |||||||||||||||||||    
T  16253210 gagaaattctaatatgatcacatgatcaaagaaaaagtgtttggt 16253166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 44880361 - 44880254
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||||||| ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  44880361 aataataaggaggaaattgataaaaaagatgactgaatattttgaggagaatcgttttatgtgtgtgttcaaacattattgatttggtcttgtgaccatg 44880262  T
Q  393 gaagaata 400  Q
     |||||||    
T  44880261 aaagaata 44880254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 293 - 404
Target Start/End: Original strand, 1994850 - 1994961
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    ||||||||||||| |||||||||||| |||||||||||||||  |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||     
T  1994850 aataataaagaggtaattgataaaaaagatgattgaatattttcaggagaatctttttgtgtgtttgtccaaacattattgatttggtcttgtgaccata 1994949  T
Q  393 gaagaatatctc 404  Q
    | ||||||||||    
T  1994950 gtagaatatctc 1994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 22220318 - 22220210
Alignment:
Q  293 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 391  Q
    |||||||| |||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||||||| |||| |||||||    
T  22220318 aataataaggaggaaattgataaaaaaagatgattgaatattttgagaagaatctttttatgtgtgtgtacaaacattattgatttgatcttttgaccat 22220219  T
Q  392 ggaagaata 400  Q
    |||||||||    
T  22220218 ggaagaata 22220210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 293 - 399
Target Start/End: Complemental strand, 2008508 - 2008400
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgacca 390  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||  ||||||||| | |||| ||||||||||||||||||||| ||    
T  2008508 aataataaggagaaaattgataaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaatattattgatttggtcttgtgatca 2008409  T
Q  391 tggaagaat 399  Q
    |||||||||    
T  2008408 tggaagaat 2008400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 405
Target Start/End: Original strand, 22831174 - 22831286
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||      
T  22831174 aataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccaga 22831273  T
Q  393 gaagaatatctcc 405  Q
    |||||||||||||    
T  22831274 gaagaatatctcc 22831286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 39056875 - 39056981
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||| ||| ||| |||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| | |||||||||| |||||||||||| || ||||    
T  39056875 aatattaaggagaaaatcgataaaaa-gatgattgaatattttgaggaaaatctttttatgtgtgtgtccaaacattatagatttggtcttgcgatcatg 39056973  T
Q  393 gaagaata 400  Q
    ||||||||    
T  39056974 gaagaata 39056981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 49851310 - 49851369
Alignment:
Q  1 aagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 60  Q
    |||||||| |||||||||||||||||||  |||||||||||||||| |||||||||||||    
T  49851310 aagtttggcgtttctagaattattccaccagtttaagcaaagagaaaagaaagaaaactc 49851369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 25199123 - 25199079
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  25199123 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggt 25199079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 26466362 - 26466438
Alignment:
Q  324 attgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 400  Q
    |||||||||||  |  ||||||||||||| | ||| ||||||||||||| ||||| |||||||||||||||||||||    
T  26466362 attgaatattttaaaaagaatctttttatatatgtgttcaaacattattaatttgatcttgtgaccatggaagaata 26466438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 22220389 - 22220346
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttgg 260  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  22220389 gagaaattttaatatggtcacaggaccaaagaaaaagtatttgg 22220346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 49851417 - 49851471
Alignment:
Q  106 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 160  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||||| |||||    
T  49851417 tgacctgttatgatttcattggatgtttgtaagtgccacatgttatgtatgtttc 49851471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 49850884 - 49850835
Alignment:
Q  111 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 160  Q
    |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  49850884 tgtcatgatttcattgaatgtttgtaagtgccacatgttatgtacgtttc 49850835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 2008581 - 2008537
Alignment:
Q  216 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttgg 260  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  2008581 tgagaaattctaatatggtcacaggaccaaagaaatagtgtttgg 2008537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 22831103 - 22831143
Alignment:
Q  218 agaaattttaatatggtcacaggaccaaagaaaaagtgttt 258  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  22831103 agaaattttaatatggtcacaggatcaaagaaaaagtgttt 22831143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 380
Target Start/End: Complemental strand, 28297782 - 28297695
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggt 380  Q
    |||||||||||||||||||||||||   ||||| |||||| |  |||||||||||||||| | | | | ||||| |||||||||||||    
T  28297782 aataataaagaggaaattgataaaagaaatgatcgaatatgttaaggagaatctttttatatatatgtccaaactttattgatttggt 28297695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 45805449 - 45805499
Alignment:
Q  211 ttctatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||||||||    
T  45805449 ttctctgagaaattctaatatggtcacatgaccaaataaaaagtgtttggt 45805499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 45805583 - 45805640
Alignment:
Q  343 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 400  Q
    |||||||||||||||| | |||||| |||||||||| |||||| | ||||||||||||    
T  45805583 atctttttatgtgtgtgtgcaaacactattgatttgatcttgtaatcatggaagaata 45805640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 1994780 - 1994825
Alignment:
Q  216 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    ||||||||| ||||||||||||| ||||||||||| ||| ||||||    
T  1994780 tgagaaattctaatatggtcacatgaccaaagaaatagtatttggt 1994825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 293 - 404
Target Start/End: Complemental strand, 8541539 - 8541427
Alignment:
Q  293 aataataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 391  Q
    |||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  8541539 aataataaggaggaaattgataaaaaataatgattgaatattttgaggagaatctttttacgtgtgtgttcaaacattattgatttggtcttgtgaccat 8541440  T
Q  392 ggaagaatatctc 404  Q
      |||||||||||    
T  8541439 aaaagaatatctc 8541427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 34998637 - 34998528
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgacca 390  Q
    |||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||  ||||||||| | |||||||||||||||||||||||||||||    
T  34998637 aataataaggagaaaattgataaaaataatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaacattattgatttggtcttgtgacca 34998538  T
Q  391 tggaagaata 400  Q
    ||||||||||    
T  34998537 tggaagaata 34998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 10545100 - 10544991
Alignment:
Q  293 aataataaagaggaaattgataaa--aatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgacca 390  Q
    ||||||||||||||||||||||||  ||  ||||||||||||||  |  | ||||||||||||||||| | |||| | |||||||| |||||||||| |     
T  10545100 aataataaagaggaaattgataaataaaaaatgattgaatattttaaaaataatctttttatgtgtgtctccaaatactattgattcggtcttgtgatcg 10545001  T
Q  391 tggaagaata 400  Q
    ||||||||||    
T  10545000 tggaagaata 10544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 29735616 - 29735661
Alignment:
Q  15 tagaattattccacaggtttaagcaaagagaagagaaagaaaactc 60  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  29735616 tagaattattccaccggtttaagcaaagagaagagaaagaaaactc 29735661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 400
Target Start/End: Original strand, 39187986 - 39188065
Alignment:
Q  321 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 400  Q
    ||||||||||||||  ||||  ||||||||||| |||| | |||| | ||||||||||||||| ||||||||||||||||    
T  39187986 atgattgaatattttaaggaccatctttttatgcgtgtgtccaaatactattgatttggtcttctgaccatggaagaata 39188065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 45627414 - 45627524
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttt-atgtgtgtat-tcaaa-cattattgatttggtcttgtgacc 389  Q
    ||||||| | ||||||||||||||||  |||||| |||||||  |||| ||| ||||| |||||||| | ||||| || ||||||||||||| |||||||    
T  45627414 aataatataaaggaaattgataaaaaaaatgattaaatattttaaggacaattttttttatgtgtgtgtgtcaaaacactattgatttggtcctgtgacc 45627513  T
Q  390 atggaagaata 400  Q
    |||||||||||    
T  45627514 atggaagaata 45627524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 32676852 - 32676800
Alignment:
Q  343 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaa 395  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||||||||    
T  32676852 atctttttacatgtgtatccaaacactattgatttggtcttgtgaccatggaa 32676800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 410
Target Start/End: Original strand, 15878797 - 15878853
Alignment:
Q  354 tgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttatt 410  Q
    ||||||| |||||  |||||||||||||||||||| || |||||||||||| |||||    
T  15878797 tgtgtatccaaacgctattgatttggtcttgtgacaatagaagaatatctctttatt 15878853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 8541611 - 8541565
Alignment:
Q  215 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||||||||||||||| | |||| |||||||| ||||||||||    
T  8541611 atgagaaattttaatatggttataggatcaaagaaatagtgtttggt 8541565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 29735710 - 29735759
Alignment:
Q  106 tgacctgtcatgatttcattgg--atgtttgtaattgtcacatgttatgt 153  Q
    ||||||||||||||||||||||  |||||||||| || ||||||||||||    
T  29735710 tgacctgtcatgatttcattggatatgtttgtaagtgccacatgttatgt 29735759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 29735166 - 29735117
Alignment:
Q  111 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 160  Q
    |||||| |||| ||||||||||||||| || ||||||||||||| |||||    
T  29735166 tgtcataattttattggatgtttgtaagtgccacatgttatgtaagtttc 29735117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 30783412 - 30783456
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||| ||| ||||||||| ||||||| ||||||||||||||    
T  30783412 gagaaattctaaaatggtcacatgaccaaataaaaagtgtttggt 30783456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 34998709 - 34998665
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||| ||||||||||||| || |||||||||||| ||||||    
T  34998709 gagaaattctaatatggtcacatgatcaaagaaaaagtatttggt 34998665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 40076693 - 40076753
Alignment:
Q  293 aataataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatctttttat 352  Q
    |||||||| |||||||||||| ||||| |||||||||||||||  |  |||||||||||||    
T  40076693 aataataaggaggaaattgataaaaaaagatgattgaatatttttaaaagaatctttttat 40076753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 293 - 404
Target Start/End: Complemental strand, 42056787 - 42056676
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||||||| ||| ||||||||||||| |||||||||||||||  | |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  42056787 aataataaggagaaaattgataaaaaagatgattgaatattttaaagagaatctttttatgtttgtgtccaaacattattgatttggtcttgtgaccatg 42056688  T
Q  393 gaagaatatctc 404  Q
    ||||||||||||    
T  42056687 gaagaatatctc 42056676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 216 - 412
Target Start/End: Complemental strand, 30208380 - 30208187
Alignment:
Q  216 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggtnnnnnnnnnnnnnntaaagaagtannnnnnnaataataaagaggaaattgataa 315  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||              |||||||||        |||||||| ||||||||||||||    
T  30208380 tgagaaattctaatatggtcacaggaccaaagaaaaagtgtttggtcacacacaca----taaagaagtgtttttttaataataaggaggaaattgataa 30208285  T
Q  316 aaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttattct 412  Q
    ||| ||||||||||||||| ||||||||||||||||||| |  || | |||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  30208284 aaaagatgattgaatattt-gaggagaatctttttatgtatatgtgtccaaacattattgatttggtcttatgaccatggaagaatacctccatattct 30208187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 305 - 404
Target Start/End: Original strand, 39402038 - 39402140
Alignment:
Q  305 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 401  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  39402038 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 39402137  T
Q  402 ctc 404  Q
    |||    
T  39402138 ctc 39402140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 405
Target Start/End: Complemental strand, 5594891 - 5594779
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||      
T  5594891 aataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccaga 5594792  T
Q  393 gaagaatatctcc 405  Q
    |||||||||||||    
T  5594791 gaagaatatctcc 5594779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 293 - 399
Target Start/End: Original strand, 1162117 - 1162222
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    ||||||||||||||||||||||| || ||  ||||||||||| |||||||||| |||||||||||| |||||| |||| |||||||||||||||| ||||    
T  1162117 aataataaagaggaaattgataagaaagac-attgaatattttgaggagaatccttttatgtgtgtgttcaaatattactgatttggtcttgtgatcatg 1162215  T
Q  393 gaagaat 399  Q
    || ||||    
T  1162216 gacgaat 1162222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 40719895 - 40720005
Alignment:
Q  293 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacc 389  Q
    |||||||| |||||||||||||||||  ||||||||||||||| ||||||||||||||||  ||||||| | ||||||||||| ||||  |||| |||||    
T  40719895 aataataaggaggaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgtccaaacattattaatttaatcttttgacc 40719994  T
Q  390 atggaagaata 400  Q
    |||||||||||    
T  40719995 atggaagaata 40720005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 405
Target Start/End: Complemental strand, 35179268 - 35179155
Alignment:
Q  293 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 391  Q
    ||||||||  ||||||||||||||||  | | ||||||||||| ||| ||||||||||||| ||||| | |||||||||||||||||||||| |||||||    
T  35179268 aataataagaaggaaattgataaaaaaaaattattgaatattttgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttatgaccat 35179169  T
Q  392 ggaagaatatctcc 405  Q
    | ||||||| ||||    
T  35179168 gaaagaatacctcc 35179155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 38460582 - 38460526
Alignment:
Q  4 tttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 60  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38460582 tttggagtttctagacttattccacaggtttaagcaaagagaagagaaagaaaactc 38460526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 403
Target Start/End: Original strand, 31333162 - 31333273
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacca 390  Q
    |||||||| ||| ||| ||||||||| |||||||||||||||  || | ||||||||||  ||||||||  |||||||| |||||||||||||||||| |    
T  31333162 aataataaggagaaaactgataaaaaagatgattgaatattttaagtaaaatctttttatgtgtgtgtaaccaaacatt-ttgatttggtcttgtgacta 31333260  T
Q  391 tggaagaatatct 403  Q
    |||||||||||||    
T  31333261 tggaagaatatct 31333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 293 - 382
Target Start/End: Complemental strand, 42921474 - 42921385
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtct 382  Q
    |||||||| || |||||||||||||| ||||||||| ||||| ||| ||||||||||||| | ||| ||||||||||||| |||||||||    
T  42921474 aataataaggatgaaattgataaaaaagatgattgattattttgagaagaatctttttatatttgtgttcaaacattattaatttggtct 42921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 38460880 - 38460929
Alignment:
Q  111 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 160  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  38460880 tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgtttc 38460929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 38460481 - 38460427
Alignment:
Q  106 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 160  Q
    |||||||| || |||||||||||||||||||| || |||||||||||||||||||    
T  38460481 tgacctgtaataatttcattggatgtttgtaagtgccacatgttatgtacgtttc 38460427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 5594962 - 5594922
Alignment:
Q  218 agaaattttaatatggtcacaggaccaaagaaaaagtgttt 258  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  5594962 agaaattttaatatggtcacaggatcaaagaaaaagtgttt 5594922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 30362018 - 30362082
Alignment:
Q  293 aataataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgt 356  Q
    |||||||| || |||||||||||||| | || ||||||||||| ||||||||| |||||||||||    
T  30362018 aataataaggacgaaattgataaaaaataataattgaatattttgaggagaatttttttatgtgt 30362082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 36132776 - 36132676
Alignment:
Q  300 aagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaat 399  Q
    ||||||||||| |||||||  |||||| |||||||  |  |  |||||||||||||||||| |||| | |||| |||| |||||||||| || |||||||    
T  36132776 aagaggaaattaataaaaaaaatgattaaatattttaaaaaccatctttttatgtgtgtatccaaatactattaatttagtcttgtgactatagaagaat 36132677  T
Q  400 a 400  Q
    |    
T  36132676 a 36132676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 39401955 - 39401999
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    ||||||||||||||| |||||| || |||||||||||||||||||    
T  39401955 gagaaattttaatatcgtcacatgatcaaagaaaaagtgtttggt 39401999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 40719821 - 40719865
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||| |||||||||| || ||||||||||||||||||||||    
T  40719821 gagaaattctaatatggtcgcatgaccaaagaaaaagtgtttggt 40719865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 1162043 - 1162089
Alignment:
Q  215 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||||| | ||||||||| ||||| ||||||||||||||||||    
T  1162043 atgagaaattcttatatggtcataggactaaagaaaaagtgtttggt 1162089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 34173603 - 34173559
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||||||| ||||||||| ||| ||| ||||||||||||||    
T  34173603 gagaaattttaacatggtcacaagactaaacaaaaagtgtttggt 34173559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 34514625 - 34514581
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    ||||||||||||||| |||||| ||||||| ||| ||||||||||    
T  34514625 gagaaattttaatatagtcacaagaccaaacaaatagtgtttggt 34514581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 35179341 - 35179296
Alignment:
Q  214 tatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    ||||||||||| |||||||||||  ||| |||||||||||||||||||    
T  35179341 tatgagaaattctaatatggtca--ggatcaaagaaaaagtgtttggt 35179296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 33758901 - 33758794
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    ||||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||    
T  33758901 aataataaaaaggaaattgataaaaaagatgattgaatagtttgaggagaatctttttatgtgtgtgtccaaacagtattgatttgatcttgtgaccatg 33758802  T
Q  393 gaagaata 400  Q
    ||||||||    
T  33758801 gaagaata 33758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 23151436 - 23151518
Alignment:
Q  299 aaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtc 381  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  23151436 aaagaagaaattgataaaaatgatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 405
Target Start/End: Original strand, 2976446 - 2976556
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    |||| |||||| ||||||||||||||  ||||||||||||||  ||||  |||||||||||||||  | |||||| ||||||||||||||| ||||||||    
T  2976446 aatattaaagaagaaattgataaaaaaaatgattgaatattttaaggaccatctttttatgtgtg--tccaaacactattgatttggtcttatgaccatg 2976543  T
Q  393 gaagaatatctcc 405  Q
    |||||||| ||||    
T  2976544 gaagaatacctcc 2976556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13869398 - 13869339
Alignment:
Q  1 aagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 60  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13869398 aagtttggcgtttctagaattattccaccggtttaagcaaagagaagagaaagaaaactc 13869339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 391
Target Start/End: Complemental strand, 34849550 - 34849451
Alignment:
Q  293 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 391  Q
    |||||||| ||| |||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| |  ||||||||||||||| ||||| |||||||    
T  34849550 aataataaggagaaaattgataaaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtcgaaacattattgatttcgtcttatgaccat 34849451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 293 - 390
Target Start/End: Complemental strand, 30319915 - 30319817
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 390  Q
    ||||| || ||||||||||||||||| |||||||||||||||  | |||||| |||||||||| |  ||| |||||||||||||||||||||||||||||    
T  30319915 aataagaaggaggaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgcgcgtatccaaacattattgatttggtcttgtgacca 30319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 20524604 - 20524711
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    ||||||||||||||||||||||||||  ||||||||||||||  |  |  ||||||| |||||||| | |||||| ||||||||| || |||||| ||||    
T  20524604 aataataaagaggaaattgataaaaaaaatgattgaatattttaaacatcatcttttgatgtgtgtgtccaaacagtattgatttagttttgtgatcatg 20524703  T
Q  393 gaagaata 400  Q
    ||||||||    
T  20524704 gaagaata 20524711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 27641032 - 27640973
Alignment:
Q  1 aagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 60  Q
    |||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  27641032 aagtttggcgtttctagaattattccaccagtttaagcaaagagaagagaaagaaaactc 27640973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 10719854 - 10719746
Alignment:
Q  293 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 391  Q
    |||| ||||||| |||||||||||||  | |||||||||||||  ||||  || ||||||||||||| | |||||| |||| |||||||||| |||||||    
T  10719854 aatagtaaagagaaaattgataaaaaaaaatgattgaatattttaaggaccatttttttatgtgtgtgtccaaacactattaatttggtcttatgaccat 10719755  T
Q  392 ggaagaata 400  Q
    |||||||||    
T  10719754 ggaagaata 10719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 293 - 380
Target Start/End: Original strand, 37872201 - 37872291
Alignment:
Q  293 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggt 380  Q
    |||||||| |||||||||||||||||  ||||||||||||||| || |||||||||||||  ||||||| | |||| ||||||||||||||    
T  37872201 aataataaggaggaaattgataaaaaaagatgattgaatattttgatgagaatctttttatgtgtgtgtgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 13869290 - 13869240
Alignment:
Q  106 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacg 156  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  13869290 tgacctgtcatgatttcattggatgtttgtaagtgccacatgttatgtacg 13869240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 27640925 - 27640875
Alignment:
Q  106 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacg 156  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  27640925 tgacctgtcatgatttcattggatgtttgtaagtgccacatgttatgtacg 27640875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 37872302 - 37872342
Alignment:
Q  363 aaacattattgatttggtcttgtgaccatggaagaatatct 403  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872302 aaacattattgatttggtcttgtgaccatggaagaatatct 37872342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 13869825 - 13869874
Alignment:
Q  111 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 160  Q
    |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  13869825 tgtcatgatttcattgaatgtttgtaagtgccacatgttatgtacgtttc 13869874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 407
Target Start/End: Complemental strand, 8026577 - 8026460
Alignment:
Q  295 taataaagaggaaattgata---aaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacc 389  Q
    ||||||||||||||||||||   ||||  ||||||||||||||  | ||  |||||||||||||| |   | |||||| ||||||||||||||||||||     
T  8026577 taataaagaggaaattgatataaaaaaaaatgattgaatattttaaagaccatctttttatgtgtatgcgtccaaacagtattgatttggtcttgtgact 8026478  T
Q  390 atggaagaatatctcctt 407  Q
    || |||||||| ||||||    
T  8026477 atagaagaatacctcctt 8026460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 392
Target Start/End: Complemental strand, 3454358 - 3454259
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 392  Q
    ||||||||| | |||||||||||||| |||||||||||||||  || ||||||||| ||| | |||    ||| |||||||||||| |||||| ||||||    
T  3454358 aataataaaaaagaaattgataaaaaagatgattgaatattttaagaagaatctttatatatttgtgactaaatattattgatttgatcttgtaaccatg 3454259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 36442703 - 36442660
Alignment:
Q  216 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttg 259  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  36442703 tgagaaattttaatatggtcacatgaccaaataaaaagtgtttg 36442660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 42285277 - 42285218
Alignment:
Q  293 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatcttttta 351  Q
    |||||||| |||||||||||||||||  | ||||||||||||| ||||||||||||||||    
T  42285277 aataataaggaggaaattgataaaaaaaaatgattgaatattttgaggagaatcttttta 42285218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 27641429 - 27641478
Alignment:
Q  111 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 160  Q
    |||||||||||||||| |||||||||| || |||||| ||||||||||||    
T  27641429 tgtcatgatttcattgaatgtttgtaagtgccacatgatatgtacgtttc 27641478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 10719927 - 10719883
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||    
T  10719927 gagaaattttattatggtcacatgaccaaataaaaagtgtttggt 10719883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 3454434 - 3454387
Alignment:
Q  214 tatgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    ||||||||||||||||||||||||| || ||| |||||||| ||||||    
T  3454434 tatgagaaattttaatatggtcacatgatcaaggaaaaagtatttggt 3454387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 16778319 - 16778273
Alignment:
Q  215 atgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||||| |||||||| |||||||||||| |||||||| |||||    
T  16778319 atgagaaattctaatatggccacaggaccaaataaaaagtgcttggt 16778273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 21239003 - 21239045
Alignment:
Q  218 agaaattttaatatggtcacaggaccaaagaaaaagtgtttgg 260  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||    
T  21239003 agaaattctaatatggtcacaagaccaaacaaaaagtgtttgg 21239045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 20654461 - 20654502
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgttt 258  Q
    |||||||| ||||||||||||| ||||||| |||||||||||    
T  20654461 gagaaattctaatatggtcacatgaccaaataaaaagtgttt 20654502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 23145929 - 23145973
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||| ||||||||||| |||| |||||||||||| ||||||    
T  23145929 gagaaattctaatatggtcataggatcaaagaaaaagtatttggt 23145973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 37872129 - 37872173
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||| ||||||| ||| ||||||||||||||||| ||||||    
T  37872129 gagaaattctaatatgatcagaggaccaaagaaaaagtatttggt 37872173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 3870135 - 3870024
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta----tgtgtgtattcaaacattattgatttggtcttgtgac 388  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||    ||||||| |  ||||||||||||||||||||||||||    
T  3870135 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttgtgac 3870036  T
Q  389 catggaagaata 400  Q
    ||||||||||||    
T  3870035 catggaagaata 3870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 11028887 - 11028779
Alignment:
Q  293 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 391  Q
    |||||||| |||||||||||||||||  |||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||||| |||| ||    
T  11028887 aataataaggaggaaattgataaaaaaagatgattgaatattttaaggagaatctttttatgtgtgtgtccaaacattattgatttggtcttttgacgat 11028788  T
Q  392 ggaagaata 400  Q
    |||||||||    
T  11028787 ggaagaata 11028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 307 - 400
Target Start/End: Complemental strand, 36400952 - 36400857
Alignment:
Q  307 aattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgaccatggaagaata 400  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||    
T  36400952 aattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgttcaaacattattgatttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 293 - 406
Target Start/End: Original strand, 28734070 - 28734183
Alignment:
Q  293 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 391  Q
    ||||||||||| ||||||||||||||  ||||| ||| ||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |    
T  28734070 aataataaagaagaaattgataaaaaaagatgagtgagtattttgaggagaat-tttttatgtgtgtgtccaaacattattgatttggtcttgtgaccgt 28734168  T
Q  392 ggaagaatatctcct 406  Q
    ||||||||| |||||    
T  28734169 ggaagaatacctcct 28734183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 37721557 - 37721449
Alignment:
Q  293 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 391  Q
    |||||||| |||||||||||||||||  | ||||||||||||| || ||||||||||||||| | || | |||| |||||||||||||||||||||||||    
T  37721557 aataataaggaggaaattgataaaaaaaaatgattgaatattttgaagagaatctttttatgcgcgtgtccaaatattattgatttggtcttgtgaccat 37721458  T
Q  392 ggaagaata 400  Q
    |||||||||    
T  37721457 ggaagaata 37721449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 38879625 - 38879517
Alignment:
Q  293 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 391  Q
    |||||| | ||| |||||||||||||  ||||||| ||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||    
T  38879625 aataatgaggagaaaattgataaaaaaagatgatttaatattttgaggagaatctttttatgtgtgtgtccaaacattattaatttggtcttgtgactat 38879526  T
Q  392 ggaagaata 400  Q
    |||||||||    
T  38879525 ggaagaata 38879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 3647526 - 3647418
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgacca 390  Q
    ||||| || ||| ||||||||||||| |||||||||||||||  | |||||| |||||||||||  || |||||||||||||||||||||||||||||||    
T  3647526 aataagaaggagaaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgttcgtgttcaaacattattgatttggtcttgtgacca 3647428  T
Q  391 tggaagaata 400  Q
     |||||||||    
T  3647427 aggaagaata 3647418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 3870208 - 3870164
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  3870208 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggt 3870164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 399
Target Start/End: Original strand, 30706149 - 30706258
Alignment:
Q  293 aataataaagaggaaattgataaaaatga-----tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtga 387  Q
    |||| |||||||||||||||||||||  |     |||||||||||||  ||||  ||||||||||||||||   |||||| |||||||||||||||||||    
T  30706149 aatagtaaagaggaaattgataaaaaaaaaaaaatgattgaatattttaaggaccatctttttatgtgtgtc--caaacactattgatttggtcttgtga 30706246  T
Q  388 ccatggaagaat 399  Q
    ||||| ||||||    
T  30706247 ccatgtaagaat 30706258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 34480055 - 34480099
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  34480055 gagaaattctaatatggtcacaggaccaaagaaaaagtgtttggt 34480099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 6512079 - 6512191
Alignment:
Q  293 aataataaagaggaaattgataaaaatga---tgattgaatattt-agaggagaatctttttatgtgtgtatt--caaacattattgatttggtcttgtg 386  Q
    ||||||||||||||||||||||||||  |   ||||||||||||| ||||   | ||||||||||||||| |   |||||| ||||||||||||||||||    
T  6512079 aataataaagaggaaattgataaaaaaaaaaatgattgaatattttagagttca-tctttttatgtgtgtgtgtccaaacactattgatttggtcttgtg 6512177  T
Q  387 accatggaagaata 400  Q
    ||||||||| ||||    
T  6512178 accatggaataata 6512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 36401036 - 36400993
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttgg 260  Q
    |||||||| ||||||||||||||||| |||||||||||||||||    
T  36401036 gagaaattctaatatggtcacaggactaaagaaaaagtgtttgg 36400993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 3949317 - 3949378
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt 354  Q
    ||||||||| | ||||||||||||||  |||||||||||||| ||||||||  |||||||||    
T  3949317 aataataaaaaagaaattgataaaaaaaatgattgaatattttgaggagaaattttttatgt 3949378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 30706078 - 30706122
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||||||||||||||||| || |||| ||||||||||||||    
T  30706078 gagaaattttaatatggtcacatgatcaaataaaaagtgtttggt 30706122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 37721630 - 37721585
Alignment:
Q  216 tgagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    ||||||||| ||||||||||||  ||| ||||||||||||||||||    
T  37721630 tgagaaattctaatatggtcacgagactaaagaaaaagtgtttggt 37721585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 9009163 - 9009119
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    |||||||| ||||||||||||| ||||||| ||| ||||||||||    
T  9009163 gagaaattctaatatggtcacaagaccaaacaaatagtgtttggt 9009119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 305 - 404
Target Start/End: Complemental strand, 35464 - 35362
Alignment:
Q  305 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 401  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  35464 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 35365  T
Q  402 ctc 404  Q
    |||    
T  35364 ctc 35362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 35547 - 35503
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaagaaaaagtgtttggt 261  Q
    ||||||||||||||| |||||| || |||||||||||||||||||    
T  35547 gagaaattttaatatcgtcacatgatcaaagaaaaagtgtttggt 35503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 2141240 - 2141348
Alignment:
Q  293 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 391  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| || | ||||| |||||||| || ||||||||||||    
T  2141240 aataataatgaggaaattgataaaaatagatgattgaatattttgagaaaaatctttttatgtgggtgtccaaacgttattgatatgatcttgtgaccat 2141339  T
Q  392 ggaagaata 400  Q
    |||||||||    
T  2141340 ggaagaata 2141348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 405
Target Start/End: Complemental strand, 7080262 - 7080148
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacca 390  Q
    |||| |||||| |||||||||||||| ||| ||||||||||| || ||||||||||||||||  |||| | |||||||||||||||||||| ||||||||    
T  7080262 aatattaaagacgaaattgataaaaaagattattgaatattttgaagagaatctttttatgtgtgtgtgtccaaacattattgatttggtcatgtgacca 7080163  T
Q  391 tggaagaatatctcc 405  Q
    | |||||||| ||||    
T  7080162 tagaagaatacctcc 7080148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 25336928 - 25337023
Alignment:
Q  306 aaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgaccatggaagaata 400  Q
    ||||||||||||| |||||||||||||||  | |||||| ||||||||||||  | | ||||||||||||||||| ||||||||||| |||||||||    
T  25336928 aaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgtgcgtgtccaaacattattgatttgatcttgtgaccaaggaagaata 25337023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 17852650 - 17852690
Alignment:
Q  219 gaaattttaatatggtcacaggaccaaagaaaaagtgtttg 259  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  17852650 gaaattttaatatggtcacagaacgaaagaaaaagtgtttg 17852690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1175 - 1234
Alignment:
Q  1 aagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1175 aagtttggagtttctagaattattccacaggtttaagcaaagagaagagaaagaaaactc 1234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 1279 - 1333
Alignment:
Q  106 tgacctgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttc 160  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  1279 tgacctgtcatgattttattggatgtttgtaagtgtcacatgttatgtacgtttc 1333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 741 - 691
Alignment:
Q  111 tgtcatgatttcattggatgtttgtaattgtcacatgttatgtacgtttcc 161  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  741 tgtcatgatttcattggatgtttgtaagtgccacatgttatgtacgtttcc 691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 400
Target Start/End: Original strand, 18084 - 18163
Alignment:
Q  321 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 400  Q
    |||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  18084 atgattgaatattttgaggagaatctttttctatgtgtgttcaaacattattgattggatcttgtaaccatggaagaata 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 17977 - 18022
Alignment:
Q  217 gagaaattttaatatggtcacaggaccaaag-aaaaagtgtttggt 261  Q
    |||||||| |||||||||||| ||||||||| ||||||||||||||    
T  17977 gagaaattctaatatggtcacgggaccaaagaaaaaagtgtttggt 18022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 408
Target Start/End: Complemental strand, 25767 - 25680
Alignment:
Q  321 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcctta 408  Q
    |||||||||||||| || || |||||||||| |||||| | ||||||||||||||||||||| |||| |||||||||||| |||||||    
T  25767 atgattgaatattttgatgaaaatctttttacgtgtgtgtccaaacattattgatttggtctcgtgatcatggaagaatacctcctta 25680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 293 - 400
Target Start/End: Original strand, 57 - 165
Alignment:
Q  293 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacca 390  Q
    ||||||||||| ||||||||||||||  ||||||||||||||  | ||  ||||||||||||  |||| | |||||| ||||||||||||||||||| ||    
T  57 aataataaagatgaaattgataaaaaa-atgattgaatatttttaagactatctttttatgtatgtgtgtccaaacactattgatttggtcttgtgatca 155  T
Q  391 tggaagaata 400  Q
    ||||||||||    
T  156 tggaagaata 165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University