View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14688_high_4 (Length: 393)
Name: NF14688_high_4
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14688_high_4 |
 | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
| [»] scaffold2086 (1 HSPs) |
| | |
|
| [»] scaffold1996 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 35754409 - 35754785
Alignment:
| Q |
1 |
aagtgtcgcataaatacttgcaatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacacctgaagaaatggtttcaattgtagaattcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35754409 |
aagtgtcgcataaatacttgcaatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacacctgaagaaatggtttcaattgtagaattcca |
35754508 |
T |
|
| Q |
101 |
accacaatgagttagaaaaaccccaactgatggatgagcaagcacttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35754509 |
accacaatgagttagaaaaaccccaactgatggatgagcaagcacttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctaga |
35754608 |
T |
|
| Q |
201 |
aaatcttgtggcaaagttgaaatttcttcacccattactacatctggtctcattatccataaaaatggtaatttactatttgctattccccaagcaaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35754609 |
aaatcttgtggcaaagttgaaatttcttcacccattactacatctggtctcattatccataaaaatggtaatttactatttgctattccccaagcaaatt |
35754708 |
T |
|
| Q |
301 |
ctttcaagtgatgatctgtcataacagttacacttccataattaacgtacaaaactgagcaaggtttccatttattc |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35754709 |
ctttcaagtgatgatctgtcataacagttacacttccataattaacgtacaaaactgagcaaggtttccatttattc |
35754785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 374
Target Start/End: Original strand, 35774539 - 35774905
Alignment:
| Q |
8 |
gcataaatacttgcaatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacacctgaagaaatggtttcaattgtagaattccaaccacaa |
107 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| ||||||| ||||||||||||||||||| |
|
|
| T |
35774539 |
gcataaataccaacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcacaccataggaaatagtttcaagtgtagaattccaaccacaa |
35774638 |
T |
|
| Q |
108 |
tgagttagaaaaaccccaactgatggatgagcaagcacttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctagaaaatctt |
207 |
Q |
| |
|
||||||| || |||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35774639 |
tgagttaagaatcccccaattgatggatgagaaagcacttgatcttgatagcaccaactagttatgtatcctctatccttaacctcatctagaaaatctt |
35774738 |
T |
|
| Q |
208 |
gtggcaaagttgaaatttcttcacccattactacatctggtctcattatccataaaaatggtaatttactatttgctattccccaagcaaattctttcaa |
307 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35774739 |
gtggcaaagttgaagtctcttcacccattgctacatctggtctcaatatccataaaaaaggtaatttactatttgctattccccaagcaaattctttcaa |
35774838 |
T |
|
| Q |
308 |
gtgatgatctgtcataacagttacacttccataattaacgtacaaaactgagcaaggtttccattta |
374 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| || | ||||||||||||| ||||||| |
|
|
| T |
35774839 |
gtgatgatttgtcataacagttatacttccataattaatatatagtactgagcaaggttcccattta |
35774905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 35865984 - 35866357
Alignment:
| Q |
1 |
aagtgtcgcataaatacttgcaatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacacctgaagaaatggtttcaattgtagaattcca |
100 |
Q |
| |
|
|||||| |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| ||||||| |||||||||||| |
|
|
| T |
35865984 |
aagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcacaccataggaaatagtttcaagtgtagaattcca |
35866083 |
T |
|
| Q |
101 |
accacaatgagttagaaaaaccccaactgatggatgagcaagcacttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctaga |
200 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35866084 |
accacaatgagtcaagaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagttatgtatcctctatccttaacttcatctaga |
35866183 |
T |
|
| Q |
201 |
aaatcttgtggcaaagttgaaatttcttcacccattactacatctggtctcattatccataaaaatggtaatttactatttgctattccccaagcaaatt |
300 |
Q |
| |
|
|| ||||| ||||||| |||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35866184 |
aactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggtaatttgctatttgctattccccaagcaaatt |
35866283 |
T |
|
| Q |
301 |
ctttcaagtgatgatctgtcataacagttacacttccataattaacgtacaaaactgagcaaggtttccattta |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||| || | ||||||| ||||| ||||||| |
|
|
| T |
35866284 |
ctttcaagtgatgatctgtcataacagttatacttccgtaattaatatatagtactgagccaggttcccattta |
35866357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 35848313 - 35848686
Alignment:
| Q |
1 |
aagtgtcgcataaatacttgcaatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacacctgaagaaatggtttcaattgtagaattcca |
100 |
Q |
| |
|
|||||| |||||||||| | |||||||||||||||||| ||||||| ||||||||||||||||| ||||| | ||||| ||||||| |||||||||||| |
|
|
| T |
35848313 |
aagtgttgcataaatacctacaatttgtttgttgctcaacaaagaaaggccaacaaatagtaggcacaccataggaaatagtttcaagtgtagaattcca |
35848412 |
T |
|
| Q |
101 |
accacaatgagttagaaaaaccccaactgatggatgagcaagcacttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctaga |
200 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35848413 |
accacaatgagtcaagaatcccccaactgatggatgagaaagcacttgatcttgatagcaccaactagttatgtatcctctatccttaacttcatctaga |
35848512 |
T |
|
| Q |
201 |
aaatcttgtggcaaagttgaaatttcttcacccattactacatctggtctcattatccataaaaatggtaatttactatttgctattccccaagcaaatt |
300 |
Q |
| |
|
|| ||||| ||||||| |||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35848513 |
aactcttgaggcaaagatgaagtctcttcacccattactacatctggtctcataatccacaaaaatggtaatttgctatttgctattccccaagcaaatt |
35848612 |
T |
|
| Q |
301 |
ctttcaagtgatgatctgtcataacagttacacttccataattaacgtacaaaactgagcaaggtttccattta |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||| || | ||||||| ||||| ||||||| |
|
|
| T |
35848613 |
ctttcaagtgatgatctgtcataacagttatacttccgtaattaatatatagtactgagccaggttcccattta |
35848686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 21 - 301
Target Start/End: Original strand, 35735590 - 35735867
Alignment:
| Q |
21 |
caatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacacctgaagaaatggtttcaattgtagaattccaaccacaatgagttagaaaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||| |||| |||| |||||| | |||| || |||||||||||||||||||||| ||| | |
|
|
| T |
35735590 |
caatttgtttgttgctcagcaaagaaaggccaaccaatcataggcttaccttcagaaatactctcaagtgatgaattccaaccacaatgagttaaaaata |
35735689 |
T |
|
| Q |
121 |
ccccaactgatggatgagcaagcacttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctagaaaatcttgtggcaaagtt-g |
219 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| ||||| | |||| || |||||||||||||||||||||| ||| ||||||| ||| | | |
|
|
| T |
35735690 |
ccccaactgatggatgagcaagtacttcactttgaggacaccatgttattatataacctctatccttaacttcatctaaaaattcttgtgacaatggacg |
35735789 |
T |
|
| Q |
220 |
aaatttcttcacccattactacatctggtctcattatccataaaaatggtaatttactatttgctattccccaagcaaattc |
301 |
Q |
| |
|
| |||| ||| |||| | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35735790 |
acatttt----ccctttaccaaatctggtctatttatccataaaaatggtaatttactatttgctaaaccccaagcaaattc |
35735867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 374
Target Start/End: Complemental strand, 3552 - 3186
Alignment:
| Q |
8 |
gcataaatacttgcaatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacacctgaagaaatggtttcaattgtagaattccaaccacaa |
107 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
3552 |
gcataaatacctacaatttgtttgttgttcagcaaagaaaggccaacaaatagtaggcacaccataagaaatagtttcaagtgtagaattccaaccacaa |
3453 |
T |
|
| Q |
108 |
tgagttagaaaaaccccaactgatggatgagcaagcacttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctagaaaatctt |
207 |
Q |
| |
|
||||| | || ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
3452 |
tgagtcaagaatcccccaactgatggatgagcaagcacttcgtcttgggagcaccaactagttatgtatcctttatccttaacttcatctagaaactctt |
3353 |
T |
|
| Q |
208 |
gtggcaaagttgaaatttcttcacccattactacatctggtctcattatccataaaaatggtaatttactatttgctattccccaagcaaattctttcaa |
307 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3352 |
gtggcaaagttgaagtctcttcacccattgctacatctggtctcaatatccataaaaaaggtaatttactatttgctattccccaagcaaattctttcaa |
3253 |
T |
|
| Q |
308 |
gtgatgatctgtcataacagttacacttccataattaacgtacaaaactgagcaaggtttccattta |
374 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| || | ||||||||||||| ||||||| |
|
|
| T |
3252 |
gtgatgatttgtcataacagttatacttccataattaatatatagtactgagcaaggttcccattta |
3186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 422 - 46
Alignment:
| Q |
1 |
aagtgtcgcataaatacttgcaatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacacctgaagaaatggtttcaattgtagaattcca |
100 |
Q |
| |
|
|||||| |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||| || | ||||| |||||||||||| |
|
|
| T |
422 |
aagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcataccagaagatatagcttcaagtgtagaattcca |
323 |
T |
|
| Q |
101 |
accacaatgagttagaaaaaccccaactgatggatgagcaagcacttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctaga |
200 |
Q |
| |
|
||||||||||||||| || | ||||| |||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
322 |
accacaatgagttaggaaccctccaaccgatggatgagcaagcacttgatcttgaaagcaccaactagttatgtatcctctatcttttacctcatctaga |
223 |
T |
|
| Q |
201 |
aaatcttgtggcaaagttgaaatttcttcacccattactacatctggtctcattatccataaaaatggtaatttactatttgctattccccaagcaaatt |
300 |
Q |
| |
|
|| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
222 |
aactcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaatt |
123 |
T |
|
| Q |
301 |
ctttcaagtgatgatctgtcataacagttacacttccataattaacgtacaaaactgagcaaggtttccatttattc |
377 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||| || | ||||||||||||| ||||| |||| |
|
|
| T |
122 |
ctttcaagtggtgatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattc |
46 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 422 - 46
Alignment:
| Q |
1 |
aagtgtcgcataaatacttgcaatttgtttgttgctcagcaaagaagggccaacaaatagtaggaacacctgaagaaatggtttcaattgtagaattcca |
100 |
Q |
| |
|
|||||| |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||| || | ||||| |||||||||||| |
|
|
| T |
422 |
aagtgttgcataaatacctacaatttgtttgttgctcagcaaagaaaggccaacaaatagtaggcataccagaagatatagcttcaagtgtagaattcca |
323 |
T |
|
| Q |
101 |
accacaatgagttagaaaaaccccaactgatggatgagcaagcacttggtcttgcatgcaccaactagttatgtatcctctatccttaacttcatctaga |
200 |
Q |
| |
|
||||||||||||||| || | ||||| |||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
322 |
accacaatgagttaggaaccctccaaccgatggatgagcaagcacttgatcttgaaagcaccaactagttatgtatcctctatcttttacctcatctaga |
223 |
T |
|
| Q |
201 |
aaatcttgtggcaaagttgaaatttcttcacccattactacatctggtctcattatccataaaaatggtaatttactatttgctattccccaagcaaatt |
300 |
Q |
| |
|
|| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
222 |
aactcttgtggcaaagatgaagtttccacacccattactacatctggtctcattatccataaaaatggcaatttactatttgctattccccaagcaaatt |
123 |
T |
|
| Q |
301 |
ctttcaagtgatgatctgtcataacagttacacttccataattaacgtacaaaactgagcaaggtttccatttattc |
377 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||| || | ||||||||||||| ||||| |||| |
|
|
| T |
122 |
ctttcaagtggtgatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattc |
46 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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