View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14688_low_1 (Length: 764)
Name: NF14688_low_1
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14688_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 659; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 7 - 746
Target Start/End: Original strand, 38346255 - 38346993
Alignment:
| Q |
7 |
agatgaaagaaggtggcagtctaaaagtttctacttctttgtctaaggattaaccaaatgagttttgtagaggagaagaggaacacgatagcagtggtct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38346255 |
agatgaaagaaggtggcagtctaaaagtttctacttctttgtctaaggattaaccaaatgagttttgtagaggagaagaggaacacgatagcagtggtct |
38346354 |
T |
|
| Q |
107 |
atagcgtctcggcaagtttactgaatcattgcaagtaataaaggtaaaatatcagggttannnnnnnataaaggcacaataaagcaataaaagtcgagag |
206 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
38346355 |
atagcgtcttggcaagtttactgaatcattgcaagtaataaaggtaaaatatcag--ttttttttttataaaggcacaataaagcaataaaagtcgagag |
38346452 |
T |
|
| Q |
207 |
aatgcctgaaccgtatacaaacagag--tacacatgagaaactctaaggaaaggtaagcctagattatcccttaggagccaagaaacttcaagcttttaa |
304 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38346453 |
aatgcctgaactgtatacaaacagagagtacacatgagaaactctaaggaaaggtaagcctagattatcccttaggagccaagaaacttcaagcttttaa |
38346552 |
T |
|
| Q |
305 |
ctaaagcttttcagattccaaagaactagcagaaaaagaccaaatatcaaaacaatcctatctatcccaccaagatagattcagcaaccaaccaaaataa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38346553 |
ctaaagcttttcagattccaaagaactagcagaaaaagaccaaatatcaaaacaatcctatctatcccaccaagatagattcagcaaccaaccaaaataa |
38346652 |
T |
|
| Q |
405 |
cagaaaatatgaacaaaactgtcaacatgacagtcggtgtcacaaatatttaggattgttttttaccacatccatttgtgaacgagtatgtatctgctca |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38346653 |
cagaaaatatgaacaaaactgtcaacatgacagtcggtgtcacaaatatttaggattgttttttaccacatccttttgtgaacgagtatgtatctgctca |
38346752 |
T |
|
| Q |
505 |
ctacttgtgcttggaaccccttttatcatttagcttattagcaggtaaaacatcaggttgtcagacacaagaacctcaaaattaatgttatttctctaac |
604 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38346753 |
ctacttgtgcttggaacccc-tttatcatttagcttattagcaggtaaaacatcaggttgtcagacacaagaacctcaaaattaatgttaattctctaac |
38346851 |
T |
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| Q |
605 |
caaattacctaattgaatggaaaaaggatgtgactgaattgttgactgtaaactgtaacaaatgtgcaagaaggaagttttaaaatattaatagtgttac |
704 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38346852 |
caaattacctaattgaatggaaaaaggatgtgactgaattgttgattgtaaactgtaacaaatgtgcaagaaggaagttttaaaatattaatagtgttac |
38346951 |
T |
|
| Q |
705 |
caatgaatgtcgattgatttcatgcatcaataacttcggtct |
746 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
38346952 |
cgatgaatgtcgattgatttcatgcatcaataactttggtct |
38346993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 18438751 - 18438706
Alignment:
| Q |
364 |
atctatcccaccaagatagattcagcaaccaaccaaaataacagaa |
409 |
Q |
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||||||||||| ||||||||||||||||||| | |||||||||||| |
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| T |
18438751 |
atctatcccactaagatagattcagcaaccatctaaaataacagaa |
18438706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 18449609 - 18449564
Alignment:
| Q |
364 |
atctatcccaccaagatagattcagcaaccaaccaaaataacagaa |
409 |
Q |
| |
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||||||||||| ||||||||||||||||||| | |||||||||||| |
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| T |
18449609 |
atctatcccactaagatagattcagcaaccatctaaaataacagaa |
18449564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Complemental strand, 18454702 - 18454657
Alignment:
| Q |
364 |
atctatcccaccaagatagattcagcaaccaaccaaaataacagaa |
409 |
Q |
| |
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||||||||||| ||||||||||||||||||| | |||||||||||| |
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| T |
18454702 |
atctatcccactaagatagattcagcaaccatctaaaataacagaa |
18454657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 339 - 400
Target Start/End: Original strand, 8455476 - 8455537
Alignment:
| Q |
339 |
aaagaccaaatatcaaaacaatcctatctatcccaccaagatagattcagcaaccaaccaaa |
400 |
Q |
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||||||||||||||||||||| | ||||||||||| |||||||| | | |||||| ||||| |
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| T |
8455476 |
aaagaccaaatatcaaaacaaacaaatctatcccactaagatagaattatcaaccatccaaa |
8455537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 409
Target Start/End: Original strand, 30559228 - 30559305
Alignment:
| Q |
335 |
agaaaaagaccaaatatcaaaacaatcctatctatcccacca---agatagattcagcaaccaaccaaaataacagaa |
409 |
Q |
| |
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|||||||| | ||||||||| | |||||| ||||||| || | |||||||||||||||||| |||||||||||||| |
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| T |
30559228 |
agaaaaagtcaaaatatcaacagaatcctctctatccaactactaagatagattcagcaaccacccaaaataacagaa |
30559305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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