View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14688_low_11 (Length: 250)
Name: NF14688_low_11
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14688_low_11 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 12042999 - 12042755
Alignment:
| Q |
1 |
ttgctgactttgattgttgaaagcttttaatgtcaactgtcatcattctagagcacctaaaatcattgaggttttatggcagccacacctattcaatcat |
100 |
Q |
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| T |
12042999 |
ttgctgactttgattgttgaaagcttttaatgtcaactgtcataattctagagcatctaaaatcattgaggttttatggcagccacacctattcaatcat |
12042900 |
T |
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| Q |
101 |
ggataaaatgtaatgctgatggtgcctccttgggatccactggccttgcaccttgtgaaggaatcttcagaaattgcagaggtgaaagtcttggttgttt |
200 |
Q |
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| T |
12042899 |
ggataaaatgtaatactgatggtgcctccttgggatccactggccttgcaccttgtgaaggaatcttcagaaattgcagaggtgaaagtcttggttgttt |
12042800 |
T |
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| Q |
201 |
tgcctataatattagaattgctaatgcatgtttgctgatattctt |
245 |
Q |
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| T |
12042799 |
tgcctataatattagaattgctaatgcatgtttgctgatattctt |
12042755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 30385 - 30593
Alignment:
| Q |
18 |
tgaaagcttttaatgtcaactgtcatcattctagagcacctaaaatcattgaggttttatggcagccacacctattcaatcatggataaaatgtaatgct |
117 |
Q |
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| T |
30385 |
tgaaagccttcaatgtgaaatgccatctgtctagagctcccaaaatcattgaagttttatggcaacccc--ctattcaatcttgggtaaaatgtaatact |
30482 |
T |
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| Q |
118 |
gatggtgcctccttgggatccactggccttgcaccttgtgaaggaatcttcagaaattgcagaggtgaaagtcttggttgttttgcctataatattagaa |
217 |
Q |
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| T |
30483 |
gacggtgcctctctaggttccactggtttggcagcttgtggaggtatctttagagattgcaaaggagacagtctgggttgttttgcttataacattggta |
30582 |
T |
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| Q |
218 |
ttgctaatgca |
228 |
Q |
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| T |
30583 |
ttgctaatgca |
30593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 16343908 - 16343802
Alignment:
| Q |
88 |
cctattcaatcatggataaaatgtaatgctgatggtgcctccttgggatccactggccttgcaccttgtgaaggaatcttcagaaattgcagaggtgaaa |
187 |
Q |
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||||||||||| ||||| ||||||||| |||||||||| |||| || || |||| | ||| |||||| ||||||||| | ||||||||| || |||| |
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| T |
16343908 |
cctattcaatcttggatcaaatgtaatactgatggtgcaaccttaggttcttctggtttagcagcttgtggaggaatctttaaaaattgcagtggggaaa |
16343809 |
T |
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| Q |
188 |
gtcttgg |
194 |
Q |
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||||||| |
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| T |
16343808 |
gtcttgg |
16343802 |
T |
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