View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14688_low_12 (Length: 245)
Name: NF14688_low_12
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14688_low_12 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 42246634 - 42246395
Alignment:
| Q |
8 |
aatatgtgttttgcggctaaaatgatattgctctttcaactaaaattagtttttcatattcatctttttgtgtagccacaacttgtttgtagcatcttgc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42246634 |
aatatgtgttttgcggctaaaatgatattgctctttcaactaaaattagtttttcatattcatctttttgtgtagccacaacttgtttgtagcatctagc |
42246535 |
T |
|
| Q |
108 |
aagcttttgaacaacataatttattttgtgccatcgacattttagtgccaccggtttcctctctaa--atagttcttgttatgatgcatgttataagctt |
205 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
42246534 |
aagcttttgaatgacataatttattttgtgccatcgacattttagtgccaccggtttcctctctaattatagttcttgttatgatacatgttataagctt |
42246435 |
T |
|
| Q |
206 |
caccaatcctcatacaaaaactaactacctttttatcaac |
245 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
42246434 |
caccaatcctcatacaaaaactatctatctttttatcaac |
42246395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 9680449 - 9680352
Alignment:
| Q |
131 |
ttttgtgccatcgacattttagtgccaccggtttcctctctaaatagttcttgttatgatgcatgttataagcttcaccaatcctcatacaaaaacta |
228 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||| |||||| | | ||||||| |||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
9680449 |
ttttgtgccatcgacctttaagtgccgtcggttttctctcttgaaaattcttgtcgcgatggttgttataagcttcaccaatcctcttccaaaaacta |
9680352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 19792748 - 19792845
Alignment:
| Q |
131 |
ttttgtgccatcgacattttagtgccaccggtttcctctctaaatagttcttgttatgatgcatgttataagcttcaccaatcctcatacaaaaacta |
228 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||| |||||| | | ||||||| |||| |||||||||||| |||||||||| | ||||||||| |
|
|
| T |
19792748 |
ttttgtgccatcgaactttaagtgccgccggttttctctcttgaaaattcttgtcgcgatggttgttataagctttaccaatcctcttccaaaaacta |
19792845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 19697763 - 19697848
Alignment:
| Q |
131 |
ttttgtgccatcgacattttagtgccaccggtttcctctctaaatagttcttgttatgatgcatgttataagcttcaccaatcctc |
216 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||| |||||| | | ||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
19697763 |
ttttgtgccatcgacctttaagtgccgtcggttttctctcttgaaaattcttgtcgcgatggttgttataagcttcaccaatcctc |
19697848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University