View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14688_low_13 (Length: 245)
Name: NF14688_low_13
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14688_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 20243675 - 20243890
Alignment:
| Q |
18 |
aatatttataaaattcgaaaccatggagattgtgaaatctccactcaagaatgacaattgtatttaggatgttaaattggggagatgcagggggcataaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20243675 |
aatatttataaaattcgaaaccatggagactgtgaaatctctactcaagaatgacaattgtatttaggatgttaaattggggagatgcaggggccataaa |
20243774 |
T |
|
| Q |
118 |
tttggtttgcaaattgattaaagttgtgataaaatcttaaaagaaatgtgattatg-cattttagaatcctttcttcttcgctatttggtaaccatgttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20243775 |
tttggtttgcaaattgattaaagttgtgataaaatcttaaaagaaatgtgattatgtcattttagaatcctttcttcttcgctatttggtaaccatgttt |
20243874 |
T |
|
| Q |
217 |
aaaaa-cttgtttatg |
231 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
20243875 |
aaaaaccttgtttatg |
20243890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 20249486 - 20249271
Alignment:
| Q |
18 |
aatatttataaaattcgaaaccatggagattgtgaaatctccactcaagaatgacaattgtatttaggatgttaaattggggagatgcagggggcataaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20249486 |
aatatttataaaattcgaaaccatggagactgtgaaatctctactcaagaatgacaattgtatttaggatgttaaattggggagatgcaggggccataaa |
20249387 |
T |
|
| Q |
118 |
tttggtttgcaaattgattaaagttgtgataaaatcttaaaagaaatgtgattatg-cattttagaatcctttcttcttcgctatttggtaaccatgttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20249386 |
tttggtttgcaaattgattaaagttgtgataaaatcttaaaagaaatgtgattatgtcattttagaatcctttcttcttcgctatttggtaaccatgttt |
20249287 |
T |
|
| Q |
217 |
aaaaa-cttgtttatg |
231 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
20249286 |
aaaaaccttgtttatg |
20249271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 44339999 - 44340214
Alignment:
| Q |
18 |
aatatttataaaattcgaaaccatggagattgtgaaatctccactcaagaatgacaattgtatttaggatgttaaattggggagatgcagggggcataaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44339999 |
aatatttataaaattcgaaaccatggagactgtgaaatctctactcaagaatgacaattgtatttaggatgttaaattggggagatgcaggggccataaa |
44340098 |
T |
|
| Q |
118 |
tttggtttgcaaattgattaaagttgtgataaaatcttaaaagaaatgtgattatg-cattttagaatcctttcttcttcgctatttggtaaccatgttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44340099 |
tttggtttgcaaattgattaaagttgtgataaaatcttaaaagaaatgtgattatgtcattttagaatcctttcttcttcgctatttggtaaccatgttt |
44340198 |
T |
|
| Q |
217 |
aaaaa-cttgtttatg |
231 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
44340199 |
aaaaaccttgtttatg |
44340214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 12035238 - 12035101
Alignment:
| Q |
73 |
aattgtatttaggatgttaaattggggagatgcagggggcataaatttggtttgcaaattgattaaagttgtgataaaatcttaaaagaaatgtgattat |
172 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| || |||| |||| ||||||||||| | |||||||||||||||||| | ||||||| || |||| |
|
|
| T |
12035238 |
aattgtaattaggatgttaaattgggg-gatgcactgg-catacattttgtttgcaaattaaataaagttgtgataaaatcatgaaagaaaggtaattag |
12035141 |
T |
|
| Q |
173 |
g-cattttagaatcctttcttcttcgctatttggtaacca |
211 |
Q |
| |
|
| |||||| ||| | |||||||| | ||||||||||||| |
|
|
| T |
12035140 |
gtcatttttaaattccttcttctttgatatttggtaacca |
12035101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University