View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14688_low_14 (Length: 244)

Name: NF14688_low_14
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14688_low_14
NF14688_low_14
[»] chr1 (38 HSPs)
chr1 (1-241)||(14758501-14758742)
chr1 (45-212)||(44920189-44920357)
chr1 (87-218)||(41649851-41649983)
chr1 (37-191)||(51681633-51681784)
chr1 (44-154)||(46729202-46729312)
chr1 (85-220)||(13792004-13792140)
chr1 (39-212)||(19547010-19547184)
chr1 (46-172)||(30529366-30529492)
chr1 (84-212)||(35508361-35508491)
chr1 (57-145)||(36564472-36564560)
chr1 (41-218)||(43492092-43492270)
chr1 (43-212)||(25670736-25670906)
chr1 (84-197)||(46895919-46896032)
chr1 (82-171)||(49338085-49338174)
chr1 (42-191)||(26297696-26297848)
chr1 (42-167)||(698790-698915)
chr1 (97-212)||(1048689-1048803)
chr1 (85-164)||(5423753-5423832)
chr1 (84-217)||(38293974-38294109)
chr1 (84-171)||(44584056-44584143)
chr1 (101-191)||(6983013-6983103)
chr1 (85-171)||(44442263-44442349)
chr1 (44-212)||(3483011-3483180)
chr1 (97-186)||(18032187-18032276)
chr1 (71-160)||(26765978-26766067)
chr1 (84-212)||(34582625-34582754)
chr1 (69-137)||(18038940-18039008)
chr1 (85-212)||(26857198-26857326)
chr1 (144-210)||(11411033-11411100)
chr1 (84-135)||(32562359-32562410)
chr1 (91-189)||(26533729-26533827)
chr1 (118-167)||(25095626-25095675)
chr1 (145-212)||(45925463-45925532)
chr1 (44-101)||(49003732-49003789)
chr1 (118-162)||(4521048-4521092)
chr1 (87-171)||(5250910-5250994)
chr1 (63-151)||(35438014-35438102)
chr1 (46-82)||(45456699-45456735)
[»] chr5 (21 HSPs)
chr5 (41-217)||(248424-248602)
chr5 (41-212)||(42877215-42877387)
chr5 (73-212)||(20125649-20125787)
chr5 (84-212)||(40944273-40944401)
chr5 (42-217)||(591188-591364)
chr5 (93-172)||(4857272-4857354)
chr5 (118-212)||(13978672-13978767)
chr5 (63-169)||(16980752-16980859)
chr5 (45-152)||(18988785-18988892)
chr5 (75-217)||(41583509-41583652)
chr5 (42-171)||(11010257-11010386)
chr5 (44-137)||(15206461-15206554)
chr5 (68-151)||(20721245-20721328)
chr5 (118-204)||(42265415-42265502)
chr5 (45-210)||(27146845-27147011)
chr5 (97-145)||(3628926-3628974)
chr5 (39-74)||(41174421-41174456)
chr5 (92-168)||(22528745-22528821)
chr5 (88-171)||(25437884-25437968)
chr5 (97-189)||(32730721-32730813)
chr5 (130-217)||(34032142-34032230)
[»] chr2 (23 HSPs)
chr2 (45-210)||(33962906-33963076)
chr2 (87-210)||(18734325-18734449)
chr2 (42-184)||(32438046-32438188)
chr2 (42-151)||(43745667-43745776)
chr2 (75-144)||(7933334-7933403)
chr2 (84-212)||(18375033-18375162)
chr2 (68-191)||(37597480-37597604)
chr2 (87-151)||(5403581-5403645)
chr2 (98-185)||(9153494-9153581)
chr2 (46-161)||(40347915-40348030)
chr2 (41-134)||(4762399-4762493)
chr2 (81-169)||(8333577-8333665)
chr2 (85-164)||(13538416-13538495)
chr2 (42-101)||(28572528-28572587)
chr2 (147-220)||(24765298-24765372)
chr2 (84-206)||(29260333-29260455)
chr2 (85-171)||(33454981-33455067)
chr2 (75-171)||(27921903-27922000)
chr2 (145-220)||(24762781-24762857)
chr2 (69-117)||(26271465-26271513)
chr2 (116-172)||(27410219-27410274)
chr2 (97-212)||(32859756-32859872)
chr2 (91-171)||(44195520-44195600)
[»] chr8 (41 HSPs)
chr8 (41-188)||(43238104-43238251)
chr8 (46-217)||(20142407-20142579)
chr8 (64-207)||(33285911-33286054)
chr8 (84-186)||(23984252-23984354)
chr8 (45-172)||(14237140-14237267)
chr8 (84-204)||(14855590-14855711)
chr8 (40-210)||(44042510-44042680)
chr8 (45-217)||(44254095-44254267)
chr8 (84-210)||(10565318-10565445)
chr8 (97-210)||(4166468-4166582)
chr8 (70-128)||(11078116-11078174)
chr8 (85-210)||(39691121-39691247)
chr8 (97-212)||(32332824-32332940)
chr8 (85-176)||(41106005-41106096)
chr8 (88-190)||(40464418-40464520)
chr8 (43-160)||(6904192-6904309)
chr8 (42-171)||(31265010-31265139)
chr8 (84-212)||(29487065-29487195)
chr8 (145-212)||(31844285-31844352)
chr8 (42-212)||(33649979-33650150)
chr8 (42-212)||(41385236-41385407)
chr8 (63-212)||(4507898-4508048)
chr8 (73-171)||(24457840-24457938)
chr8 (42-126)||(26750608-26750693)
chr8 (46-151)||(44411051-44411156)
chr8 (90-189)||(1502682-1502782)
chr8 (65-212)||(12787819-12787967)
chr8 (87-151)||(30674943-30675007)
chr8 (84-212)||(34336479-34336607)
chr8 (89-137)||(40914582-40914630)
chr8 (88-171)||(37564342-37564425)
chr8 (116-167)||(39312194-39312245)
chr8 (87-142)||(40852100-40852155)
chr8 (93-171)||(1162747-1162824)
chr8 (43-89)||(15546764-15546810)
chr8 (42-135)||(27801189-27801283)
chr8 (70-126)||(41429595-41429652)
chr8 (66-131)||(44960516-44960581)
chr8 (122-191)||(45368767-45368836)
chr8 (37-89)||(13521809-13521861)
chr8 (67-139)||(40380123-40380195)
[»] chr4 (35 HSPs)
chr4 (43-189)||(38949024-38949170)
chr4 (39-186)||(38380456-38380603)
chr4 (42-188)||(39804851-39804997)
chr4 (45-171)||(41370135-41370261)
chr4 (84-207)||(32892986-32893111)
chr4 (106-212)||(31655474-31655581)
chr4 (41-206)||(7388752-7388918)
chr4 (43-212)||(19652604-19652774)
chr4 (72-178)||(23133038-23133148)
chr4 (74-206)||(49011879-49012012)
chr4 (67-143)||(34469556-34469632)
chr4 (84-212)||(36721592-36721721)
chr4 (88-168)||(41956440-41956520)
chr4 (45-210)||(5047177-5047343)
chr4 (143-212)||(50131031-50131101)
chr4 (75-154)||(55855178-55855254)
chr4 (84-222)||(46521465-46521604)
chr4 (147-212)||(23135502-23135568)
chr4 (85-171)||(48097965-48098051)
chr4 (41-218)||(51291051-51291229)
chr4 (85-171)||(52650697-52650783)
chr4 (84-135)||(31690431-31690483)
chr4 (42-126)||(41415715-41415799)
chr4 (88-171)||(2063488-2063571)
chr4 (103-212)||(24981763-24981873)
chr4 (75-212)||(28695737-28695875)
chr4 (85-171)||(45743328-45743414)
chr4 (70-167)||(1696180-1696277)
chr4 (67-135)||(7852532-7852601)
chr4 (70-171)||(38682670-38682771)
chr4 (43-188)||(50086373-50086518)
chr4 (116-176)||(23016260-23016320)
chr4 (75-167)||(25751698-25751790)
chr4 (67-171)||(40252669-40252772)
chr4 (84-212)||(54495450-54495581)
[»] chr3 (25 HSPs)
chr3 (46-212)||(3973784-3973950)
chr3 (43-212)||(3995924-3996093)
chr3 (87-212)||(4009495-4009621)
chr3 (42-172)||(49682179-49682309)
chr3 (46-178)||(21813124-21813256)
chr3 (43-203)||(34285330-34285487)
chr3 (57-217)||(7278144-7278305)
chr3 (84-189)||(32606388-32606493)
chr3 (107-184)||(31294370-31294447)
chr3 (84-171)||(39144981-39145067)
chr3 (75-171)||(48811365-48811461)
chr3 (97-171)||(29484855-29484929)
chr3 (85-151)||(46895923-46895989)
chr3 (146-210)||(32734654-32734719)
chr3 (89-185)||(36494174-36494271)
chr3 (87-171)||(48551053-48551137)
chr3 (92-171)||(51039768-51039847)
chr3 (40-82)||(9596264-9596306)
chr3 (74-139)||(19898098-19898163)
chr3 (98-167)||(25299057-25299126)
chr3 (66-171)||(29212713-29212818)
chr3 (88-161)||(43803992-43804065)
chr3 (89-154)||(46547791-46547856)
chr3 (70-151)||(47930114-47930195)
chr3 (145-190)||(52299036-52299081)
[»] chr7 (28 HSPs)
chr7 (41-218)||(6771802-6771980)
chr7 (46-217)||(44319823-44319995)
chr7 (84-218)||(6775196-6775331)
chr7 (64-188)||(5495959-5496080)
chr7 (75-172)||(26213-26310)
chr7 (69-168)||(31902740-31902839)
chr7 (46-151)||(20397437-20397542)
chr7 (86-210)||(18926301-18926425)
chr7 (84-212)||(33899742-33899871)
chr7 (84-191)||(26402788-26402895)
chr7 (70-172)||(3298230-3298332)
chr7 (41-126)||(26239503-26239589)
chr7 (46-191)||(5248601-5248746)
chr7 (43-164)||(26803984-26804105)
chr7 (43-151)||(10031886-10031994)
chr7 (84-116)||(13040300-13040332)
chr7 (46-212)||(27076088-27076266)
chr7 (46-212)||(27202035-27202213)
chr7 (88-211)||(46726109-46726232)
chr7 (42-105)||(47754471-47754534)
chr7 (85-171)||(19620005-19620091)
chr7 (46-172)||(24557746-24557871)
chr7 (74-168)||(40722375-40722469)
chr7 (42-172)||(41898266-41898396)
chr7 (34-114)||(14651345-14651426)
chr7 (67-135)||(28663127-28663196)
chr7 (84-212)||(43210966-43211093)
chr7 (41-102)||(43234873-43234933)
[»] scaffold0633 (1 HSPs)
scaffold0633 (87-218)||(5013-5145)
[»] scaffold0027 (1 HSPs)
scaffold0027 (42-191)||(122429-122578)
[»] chr6 (14 HSPs)
chr6 (70-188)||(29988321-29988437)
chr6 (37-136)||(34530341-34530440)
chr6 (67-135)||(1479081-1479149)
chr6 (84-169)||(5678477-5678562)
chr6 (90-206)||(10570954-10571071)
chr6 (73-122)||(10245808-10245857)
chr6 (68-189)||(25028688-25028809)
chr6 (84-212)||(29407974-29408103)
chr6 (70-136)||(2350320-2350388)
chr6 (106-190)||(13396960-13397045)
chr6 (69-134)||(27778805-27778869)
chr6 (85-137)||(6586424-6586476)
chr6 (42-94)||(8552894-8552946)
chr6 (84-139)||(22695487-22695543)
[»] scaffold0172 (1 HSPs)
scaffold0172 (46-215)||(13433-13603)
[»] scaffold0036 (2 HSPs)
scaffold0036 (150-210)||(21274-21335)
scaffold0036 (103-134)||(21334-21365)
[»] scaffold0182 (1 HSPs)
scaffold0182 (41-151)||(20184-20294)
[»] scaffold0018 (1 HSPs)
scaffold0018 (118-207)||(48755-48845)
[»] scaffold0343 (1 HSPs)
scaffold0343 (93-138)||(6273-6318)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14758742 - 14758501
Alignment:
Q  1 tatgtcattcgggacacaagttagcatttgccttttaatatagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| | |||||||||||||||||    
T  14758742 tatgtcattcgggacacaagttagcatttgccttttaatatagggaaatgttaacgagtgctctaaggacactctttaaggactttaaatagtaaatttt 14758643  T
Q  101 tatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggaca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  14758642 tatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattggaaaactttaaagagtgcccttaggaca 14758543  T
Q  200 ctcgttaacaagagcctttaatatatctaaaaagagtattat 241  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  14758542 ctcgttaacaagaccctttaatatatctaaaaagagtattat 14758501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 45 - 212
Target Start/End: Complemental strand, 44920357 - 44920189
Alignment:
Q  45 gaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaa 144  Q
    ||||||||||| ||||| |||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||||    
T  44920357 gaaatgttaacgagtgccctaagggcactttttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatgcatcataaattgaagtgttaa 44920258  T
Q  145 acttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaaga 212  Q
    |||||||||| ||||||||||||||||| ||||| ||||||| || |||||  ||||||||||||||||    
T  44920257 acttttttaatgaataatttcttaattgagaaaccttaaagaatgcccttaaaacactcgttaacaaga 44920189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 41649983 - 41649851
Alignment:
Q  87 aaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaaga 186  Q
    |||||||||||||||||| |||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |    
T  41649983 aaatagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaattgggaaaccttaaaaa 41649884  T
Q  187 gtg-ccttaggacactcgttaacaagagccttt 218  Q
    |||  |||| | |||| |||||||||| |||||    
T  41649883 gtgttcttaaggcacttgttaacaagacccttt 41649851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 51681784 - 51681633
Alignment:
Q  37 aatatagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattga 136  Q
    |||| ||| |||||||||| |||| ||||||| ||||||||||||| | |||||| |||||||  ||| |||||||| ||||||||||| || ||||| |    
T  51681784 aataaaggaaaatgttaacgagtgttctaagg-cactttttaagaactctaaataataaattt--atggaaaattgtacattcaatgcaccggaaattaa 51681688  T
Q  137 aatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtgcc 191  Q
    | ||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  51681687 agtgttaaactttttcaaagaataatttcttaattgggaaaccttaaagagtgcc 51681633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 46729312 - 46729202
Alignment:
Q  44 ggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtta 143  Q
    |||||| ||||| ||||| |||| |||||| |||||| | ||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||    
T  46729312 ggaaatattaacgagtgccctaaaggcactctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatgcatcggaatttgaagtgtta 46729213  T
Q  144 aacttttttaa 154  Q
    | |||||||||    
T  46729212 atcttttttaa 46729202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 13792004 - 13792140
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaa 184  Q
    ||||||||||||||||||| | |||||||||||| |||||||| | ||||||| ||||||||||||| ||  |||||||| ||||||   |||| |||||    
T  13792004 ttaaatagtaaatttttataagaaattgtgcattaaatgcatcaataattgaagtgttaaactttttaaaaaaataattttttaattaaaaaaccttaaa 13792103  T
Q  185 gagtgcctt-aggacactcgttaacaagagcctttaa 220  Q
    ||||| ||| ||||||||||||| ||||| |||||||    
T  13792104 gagtgtcttaaggacactcgttagcaagaccctttaa 13792140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 19547010 - 19547184
Alignment:
Q  39 tatagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaa 138  Q
    |||||||||||| |||  ||||| ||||||||||| |||||| | |||| ||||||| |||||||  ||| |||||||||||||||||||  |||||||     
T  19547010 tatagggaaatgctaatgagtgccctaagggcactctttaaggactttatatagtaagtttttatagaaacttgtgcattcaatgcatcgggaattgaag 19547109  T
Q  139 tgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaaga 212  Q
    | ||  || |||| || ||||||||||||| ||||||| | ||||||| || ||||||| ||||||||| |||||    
T  19547110 tattggacattttcaatgaataatttcttacttgggaatccttaaagaatgcccttagggcactcgttagcaaga 19547184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 30529492 - 30529366
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 145  Q
    |||||||||| |||||| | | | || | |||||| | ||||||||||||||||||||| ||||||||||||| ||||||||  |||||||| |||||||    
T  30529492 aaatgttaacgagtgcttttaagacattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcagaaattgaagtgttaaa 30529393  T
Q  146 cttttttaaggaataatttcttaattg 172  Q
     ||||| || |||||||||||||||||    
T  30529392 ttttttcaaagaataatttcttaattg 30529366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 35508491 - 35508361
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaa-tgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaacttta 182  Q
    |||||||| ||||||||||||| ||||||| |||| || ||||| | |||||||| ||||||| ||||| || ||||||||||||||||| |||||  ||    
T  35508491 tttaaataataaatttttatgagaaattgtacatttaaatgcattggaaattgaagtgttaaattttttcaaagaataatttcttaattgagaaaccata 35508392  T
Q  183 aagagtg-ccttaggacactcgttaacaaga 212  Q
    ||||||| | | ||| |||||||||||||||    
T  35508391 aagagtgtcatcagggcactcgttaacaaga 35508361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 145
Target Start/End: Original strand, 36564472 - 36564560
Alignment:
Q  57 agtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 145  Q
    ||||| ||||| ||||| |||||| | ||||||||||||| ||||||||||||||||||||||||||| |   |||||||| |||||||    
T  36564472 agtgccctaagagcactctttaaggactttaaatagtaaaattttatgaaaaattgtgcattcaatgctttagaaattgaagtgttaaa 36564560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 218
Target Start/End: Original strand, 43492092 - 43492270
Alignment:
Q  41 tagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatg 140  Q
    ||||||||||||||||||||| || |||||| |  |||  || |||||||||||||||||| | |||  || || | ||||||||| | |||||||| |     
T  43492092 tagggaaatgttaacaagtgc-cttagggcattgcttagtaactttaaatagtaaatttttgtcaaagtttatgaaatcaatgcattggaaattgaagtt 43492190  T
Q  141 ttaaac-ttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaagagccttt 218  Q
    ||  || ||||||||  ||||||||||| ||| |||| | |||||||||| ||||||| ||||||||||||||| |||||    
T  43492191 tttgactttttttaaaaaataatttctttattaggaatccttaaagagtgcccttagggcactcgttaacaagacccttt 43492270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 212
Target Start/End: Original strand, 25670736 - 25670906
Alignment:
Q  43 gggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtt 142  Q
    ||||||||||||||||||| || |||||| | ||||  || |||||||||||| ||||| | |||  || || | ||||||||| |||||||| | | ||    
T  25670736 gggaaatgttaacaagtgcccttagggcattgtttagtaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattgaaaattggagtttt 25670835  T
Q  143 aaacttttttaaggaataatttcttaattgggaaactttaaagagtgc-cttaggacactcgttaacaaga 212  Q
      |||||||||| |||||||||||| ||| | || | |||||  |||| |||||| |||||||||||||||    
T  25670836 tgacttttttaaagaataatttctttattagaaatccttaaaaggtgctcttagggcactcgttaacaaga 25670906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 197
Target Start/End: Complemental strand, 46896032 - 46895919
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||| ||||||| |||||||  ||| || |||||||||||||||| |||||||||| ||| ||||||| ||  |||||||||||||||  ||| ||||||    
T  46896032 tttagatagtaagtttttatagaaatttatgcattcaatgcatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatctttaa 46895933  T
Q  184 agagtgccttagga 197  Q
      ||| ||||||||    
T  46895932 caagtaccttagga 46895919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 49338174 - 49338085
Alignment:
Q  82 aatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    |||||| |||||||||||||||||||| |||| ||||  ||  ||||||||||||||  ||||| |||||||| ||||||||| ||||||    
T  49338174 aatttagatagtaaatttttatgaaaatttgtccattttatatatcgaaaattgaaacattaaatttttttaatgaataattttttaatt 49338085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 191
Target Start/End: Complemental strand, 26297848 - 26297696
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattca---atgcatcgaaaattgaaa 138  Q
    ||||||||| |||  ||||| ||| ||||| | |||||| | |||| ||||||| |||||||  ||| ||||||||||    |||||||| |||||||||    
T  26297848 agggaaatgctaatgagtgccctaggggcattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaa 26297749  T
Q  139 tgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtgcc 191  Q
    | |||| |||||| || ||||| |||| ||||||||||   ||||||||||||    
T  26297748 tattaagctttttcaatgaatagtttcataattgggaatacttaaagagtgcc 26297696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 698790 - 698915
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgt 141  Q
    |||||||||||||||||||| || |||||| | ||||  || |||||||||||| ||||||| |||  || || | ||||||||| | |||||  | | |    
T  698790 agggaaatgttaacaagtgcccttagggcattgtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattggaaatttgagttt 698889  T
Q  142 taaacttttttaaggaataatttctt 167  Q
    | ||||||||||| ||||||||||||    
T  698890 ttaacttttttaatgaataatttctt 698915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 1048689 - 1048803
Alignment:
Q  97 tttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtgccttagg 196  Q
    ||||||||||||||| ||||||||| |||| |||||||||| | || ||| ||||||| ||||||||| |||||| || |   |||||||||||| |       
T  1048689 tttttatgaaaaattatgcattcaacgcattgaaaattgaactatttaac-tttttaaagaataattttttaatttggtatgcttaaagagtgccctgaa 1048787  T
Q  197 acactcgttaacaaga 212  Q
    |||||| |||||||||    
T  1048788 acactcattaacaaga 1048803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 5423753 - 5423832
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataattt 164  Q
    |||||| |||| |||||||||||| || || ||| ||||||| |||||||||| | || ||||||||||| |||||||||    
T  5423753 ttaaatggtaattttttatgaaaacttatgtatttaatgcattgaaaattgaactatttaacttttttaaagaataattt 5423832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 217
Target Start/End: Complemental strand, 38294109 - 38293974
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaat-gttaaacttttttaaggaataatttcttaattgggaaacttta 182  Q
    |||||||||||| |||||||  ||| ||||||||||||||||| | ||||| ||||  ||| |||||||  | ||| ||||||||||||  ||| | ||     
T  38294109 tttaaatagtaagtttttatagaaacttgtgcattcaatgcattggaaattaaaatatttatactttttctatgaacaatttcttaatttagaatcattt 38294010  T
Q  183 aagagtg-ccttaggacactcgttaacaagagcctt 217  Q
    |||||||  |||||||||||||||| ||||| ||||    
T  38294009 aagagtgttcttaggacactcgttatcaagaccctt 38293974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 44584056 - 44584143
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    |||| ||||||| |||||||||||| ||||||||| ||| ||| |||||||||||  ||| ||||||| ||  |||| ||||||||||    
T  44584056 tttagatagtaagtttttatgaaaacttgtgcatttaatacattgaaaattgaaacattagactttttcaacaaatagtttcttaatt 44584143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 6983013 - 6983103
Alignment:
Q  101 tatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtgcc 191  Q
    |||||||| || || || |||||||| |||||||||||| ||  ||| |||||| |||||||||||||||| ||||   ||||||||||||    
T  6983013 tatgaaaatttatgtatccaatgcattgaaaattgaaatatttgactcttttaatgaataatttcttaatttggaatacttaaagagtgcc 6983103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 44442349 - 44442263
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||||||||| ||||||| ||||  |||| ||| |||| || |||||||||||| ||  |||||||||| |||||||||| |||||    
T  44442349 ttaaatagtaactttttataaaaatatgtgtatttaatgtattgaaaattgaaatatttgacttttttaaagaataatttcctaatt 44442263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 3483180 - 3483011
Alignment:
Q  44 ggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtta 143  Q
    |||||||||||||||| | || |||||| | ||||  || |||||||||||| ||||| | |||  || || | || |||||| |||||||| | | ||     
T  3483180 ggaaatgttaacaagtacccttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcgatgcattgaaaattggagttttt 3483081  T
Q  144 aacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaaga 212  Q
     |||||||||| |||||||||||| ||| | || | |||||||| | ||||| |||||||||||| ||||    
T  3483080 gacttttttaaagaataatttctttattagaaatccttaaagagcgcccttatgacactcgttaataaga 3483011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 18032276 - 18032187
Alignment:
Q  97 tttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaaga 186  Q
    |||||||| ||| || |||||| ||||||||| ||||||||   ||||||||||| ||  |||||||||||||||  ||| |||||||||    
T  18032276 tttttatggaaacttatgcatttaatgcatcggaaattgaagcattaaactttttcaataaataatttcttaattcagaatctttaaaga 18032187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 26766067 - 26765978
Alignment:
Q  71 actttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaata 160  Q
    |||||||||| | |||| ||||||| ||| ||| |||| || |||||||||| ||||  |||||||||| ||||||||||| || |||||    
T  26766067 actttttaaggactttagatagtaagtttatataaaaacttatgcattcaatccatcagaaattgaaatattaaactttttcaatgaata 26765978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 34582754 - 34582625
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||| ||||||| |||||||||||| || |||||||||||||||  ||||||||   ||| ||||||| |  ||||||||| ||||||   || | || |    
T  34582754 tttagatagtaagtttttatgaaaacttatgcattcaatgcatcagaaattgaagcattatactttttcattgaataattttttaatttaaaatccttga 34582655  T
Q  184 agagtgc-cttaggacactcgttaacaaga 212  Q
    ||||||| |||||| |||||||||| ||||    
T  34582654 agagtgctcttagggcactcgttaataaga 34582625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 18039008 - 18038940
Alignment:
Q  69 gcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaa 137  Q
    |||||||||||  | |||| ||| ||| |||||||||||| ||||| ||||||||||||| ||||||||    
T  18039008 gcactttttaaagactttagataataattttttatgaaaatttgtgtattcaatgcatcggaaattgaa 18038940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 26857198 - 26857326
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaa 184  Q
    ||||||||||| ||||||||| |  ||||  ||||||||||| ||||||| || | || ||||||||||| |||||||||  |||||    |  ||||||    
T  26857198 ttaaatagtaattttttatgagattttgtatattcaatgcattgaaaattaaactatttaacttttttaaagaataattttctaatttacgatgtttaaa 26857297  T
Q  185 gagtgccttagga-cactcgttaacaaga 212  Q
    | ||||||||| | |||||||||||||||    
T  26857298 gggtgccttagaagcactcgttaacaaga 26857326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 11411033 - 11411100
Alignment:
Q  144 aacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaa 210  Q
    |||||||| || |||||||||||||||  | || | |||||||||| |||||||||||||||||||||    
T  11411033 aactttttcaatgaataatttcttaatgagaaatccttaaagagtgtccttaggacactcgttaacaa 11411100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 32562359 - 32562410
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattg 135  Q
    |||||||||||| ||||||| |||||||||| ||||| ||||| ||||||||    
T  32562359 tttaaatagtaagtttttataaaaaattgtgtattcactgcattgaaaattg 32562410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 26533729 - 26533827
Alignment:
Q  91 agtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg 189  Q
    |||||||||||||| ||| ||||||||| ||  || || ||||||||| |||| ||||||| ||   ||||||||||||||| ||| | ||||| ||||    
T  26533729 agtaaatttttatggaaacttgtgcatttaaaacagcggaaattgaaacgttagactttttcaattgataatttcttaattgagaatccttaaaaagtg 26533827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 25095675 - 25095626
Alignment:
Q  118 tcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttctt 167  Q
    |||||||||||||||||||||| ||  ||||||||| | |||||||||||    
T  25095675 tcaatgcatcgaaaattgaaatatttgacttttttatgaaataatttctt 25095626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 45925532 - 45925463
Alignment:
Q  145 acttttttaaggaataattt-cttaattgggaaactttaaagagtg-ccttaggacactcgttaacaaga 212  Q
    |||||||||| ||||||||| ||| |||  ||| | |||||||||| |||||||||||||||||||||||    
T  45925532 acttttttaaagaataattttctttattaagaatccttaaagagtgtccttaggacactcgttaacaaga 45925463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 49003789 - 49003732
Alignment:
Q  44 ggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaattttt 101  Q
    |||||||||||||||||| || | |||| | ||||| || ||||||||||||||||||    
T  49003789 ggaaatgttaacaagtgcccttatggcattgtttaataactttaaatagtaaattttt 49003732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 4521048 - 4521092
Alignment:
Q  118 tcaatgcatcgaaaattgaaatgttaaacttttttaaggaataat 162  Q
    ||||||||| | ||||||||||||| ||||||||||| |||||||    
T  4521048 tcaatgcattggaaattgaaatgtttaacttttttaaagaataat 4521092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 5250910 - 5250994
Alignment:
Q  87 aaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||| ||| |||||||||||| ||||| ||| ||| ||| ||||||| || ||||  |||||||||| |||||| ||| |||||    
T  5250910 aaataataattttttatgaaaatttgtgtatttaatacattgaaaattaaactgtttgacttttttaaagaataacttcctaatt 5250994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 35438014 - 35438102
Alignment:
Q  63 ctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttt 151  Q
    ||||||||||| |||||||  || || |||| | ||||||||||||  |||  ||||||||||| | |||| |||||||| ||||||||    
T  35438014 ctaagggcactctttaagagtttaaagtagtgagtttttatgaaaatatgtatattcaatgcattggaaatcgaaatgtttaacttttt 35438102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 45456735 - 45456699
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaa 82  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  45456735 aaatgttaacaagtgttctaaggacactttttaagaa 45456699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 41 - 217
Target Start/End: Original strand, 248424 - 248602
Alignment:
Q  41 tagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatg 140  Q
    ||||||||||||||| |||||  |||||||||| |||||| | || |||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||    
T  248424 tagggaaatgttaactagtgccttaagggcactctttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatacatcggaaattgaagtg 248523  T
Q  141 ttaaactttttt-aaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaagagcctt 217  Q
    |||||||||||| ||| |||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||||| ||||    
T  248524 ttaaacttttttaaagaaataatttcttaattgagaaaccttaaagagtgcccttaagacactcgttaacaagaccctt 248602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 42877387 - 42877215
Alignment:
Q  41 tagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatg 140  Q
    |||| |||||||||| |||  |||||||||||| |||||  | ||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||     
T  42877387 taggaaaatgttaacgagtattctaagggcactctttaaagactttaaatagtaaatttttatggaaaattgtgtattcaatacattgaaaattgaaatt 42877288  T
Q  141 ttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaaga 212  Q
    |||||||||||| | ||||||||||| ||||| |||||||||||||||| |||||| |||||||||| |||||    
T  42877287 ttaaacttttttcatgaataatttctcaattgagaaactttaaagagtgtccttagaacactcgttagcaaga 42877215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 20125649 - 20125787
Alignment:
Q  73 tttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattg 172  Q
    |||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  20125649 tttttaaggactttaaatagtaaatttttatgaaaaattgtgcatttagtgcatcgaaaattgaagtgttaaacttttttaaagaataa-ttcttaattg 20125747  T
Q  173 ggaaactttaaagagtgcc-ttaggacactcgttaacaaga 212  Q
      |||||||||| |||||| ||| |||||||||||||||||    
T  20125748 aaaaactttaaa-agtgcctttaagacactcgttaacaaga 20125787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 40944273 - 40944401
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||| |||||||||||||||| ||| |||| |||||||||||||||||||||||   ||| ||||||| || ||||||||||||||||  ||| | | ||    
T  40944273 tttagatagtaaatttttatggaaatttgtacattcaatgcatcgaaaattgaagcattatactttttcaatgaataatttcttaatttagaatcctaaa 40944372  T
Q  184 agagtgccttaggacactcgttaacaaga 212  Q
    | |||||||||| ||||||||||||||||    
T  40944373 aaagtgccttagaacactcgttaacaaga 40944401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 591188 - 591364
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgt 141  Q
    ||||||||||||||||||||||| |||||| | ||||  || |||||||||||| ||||| | |||  || || | ||||||||| | |||||||| | |    
T  591188 agggaaatgttaacaagtgctcttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagttt 591287  T
Q  142 taaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaagagcctt 217  Q
    |  |||||||||| |||||||||||| ||| | || | |||||||||| | ||||| ||||||||||||||| ||||    
T  591288 tcgacttttttaaagaataatttctttattagaaatccttaaagagtgtctttagggcactcgttaacaagaccctt 591364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 4857354 - 4857272
Alignment:
Q  93 taaatttttatgaaaaatt---gtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattg 172  Q
    |||||||||||||||||||    | ||||||||| |||||||||| |||||||||||||||| || |||||||||||||||||    
T  4857354 taaatttttatgaaaaattatactacattcaatgtatcgaaaattaaaatgttaaactttttcaaagaataatttcttaattg 4857272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 13978672 - 13978767
Alignment:
Q  118 tcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtgcc-ttaggacactcgttaacaaga 212  Q
    ||||||||| | |||||||| | || |||||||||||| ||||||||||| ||||| || | ||||| |||||| |||||||||||||||||||||    
T  13978672 tcaatgcattggaaattgaagtttttaacttttttaagaaataatttctttattggaaatccttaaaaagtgcctttaggacactcgttaacaaga 13978767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 16980859 - 16980752
Alignment:
Q  63 ctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttt-tttaaggaataa 161  Q
    |||||| |||| |||||  | ||||||||||| |||||||||||||||| | ||||||||| |||| |||||||| ||||||||||| |  || ||||||    
T  16980859 ctaaggacactctttaaagactttaaatagtacatttttatgaaaaattatacattcaatgtatcggaaattgaagtgttaaactttctcaaaagaataa 16980760  T
Q  162 tttcttaa 169  Q
    ||||||||    
T  16980759 tttcttaa 16980752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 18988892 - 18988785
Alignment:
Q  45 gaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaa 144  Q
    |||||| |||| ||||| ||||||| |||||||||| |  ||| |||||||||||||||||||| || |||||||||||||| | ||||| || | |||     
T  18988892 gaaatgataacgagtgccctaagggtactttttaaggacattagatagtaaatttttatgaaaacttatgcattcaatgcattggaaatttaagtattag 18988793  T
Q  145 actttttt 152  Q
    ||||||||    
T  18988792 actttttt 18988785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 217
Target Start/End: Complemental strand, 41583652 - 41583509
Alignment:
Q  75 tttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattggg 174  Q
    ||||||||  || |||||||||||||||||||||  |||| ||||||||||| | || ||| ||| || |||||||| |||||||||||||| |||| ||    
T  41583652 tttaagaatcttcaatagtaaatttttatgaaaatctgtgtattcaatgcattggaatttgtaatatttaactttttgaaggaataatttctaaatttgg 41583553  T
Q  175 aaactttaaagagtg-ccttaggacactcgttaacaagagcctt 217  Q
     | | |||||||||| ||   || ||||||||||||||| ||||    
T  41583552 gatccttaaagagtgacccgggggcactcgttaacaagaccctt 41583509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 11010386 - 11010257
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgt 141  Q
    ||||||||| |||| ||||  ||||||||| |||||||| | || | ||||||  |||||||| ||| ||||| ||||||||||||  |||||||| | |    
T  11010386 agggaaatgctaacgagtggcctaagggcattttttaaggacttcagatagtatgtttttatggaaagttgtgtattcaatgcatcagaaattgaagtat 11010287  T
Q  142 taaacttttttaaggaataatttcttaatt 171  Q
    || ||||||| || ||||| ||||||||||    
T  11010286 tagactttttcaatgaatagtttcttaatt 11010257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 15206461 - 15206554
Alignment:
Q  44 ggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaa 137  Q
    |||||||||| | ||| || ||||| |||| ||||| |  |||||||| ||| |||||||||||| |||||||||||||| |||||||||||||    
T  15206461 ggaaatgttagcgagtactttaaggacactctttaaaagctttaaataataattttttatgaaaatttgtgcattcaatgaatcgaaaattgaa 15206554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 20721245 - 20721328
Alignment:
Q  68 ggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttt 151  Q
    |||||| |||||||| || |||||||||  ||||||| |||  |||||||||||| ||| ||||||||||||||| ||||||||    
T  20721245 ggcactctttaagaatttaaaatagtaatattttatggaaatatgtgcattcaatacattgaaaattgaaatgtttaacttttt 20721328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 42265502 - 42265415
Alignment:
Q  118 tcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtgc-cttaggacactcgt 204  Q
    ||||||||| |||||||||||| ||  |||||||||| ||||||||| || |||  ||| | ||||||||||| ||||||||||||||    
T  42265502 tcaatgcattgaaaattgaaatttttgacttttttaaagaataatttttttattaagaatccttaaagagtgctcttaggacactcgt 42265415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 210
Target Start/End: Complemental strand, 27147011 - 27146845
Alignment:
Q  45 gaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaa 144  Q
    ||||||||||||| ||| || |||||| | ||||  || |||||||||||| ||||| | |||  || || | ||||||||| | |||||  | | || |    
T  27147011 gaaatgttaacaaatgcccttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattagagttttta 27146912  T
Q  145 acttttttaaggaataatttcttaattgggaaactttaaagagtgcc-ttaggacactcgttaacaa 210  Q
    |||||||||| |||||||||||| ||| | || | |||||||||||| |||||  ||||||||||||    
T  27146911 acttttttaaagaataatttctttattagaaatccttaaagagtgcctttaggggactcgttaacaa 27146845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 3628926 - 3628974
Alignment:
Q  97 tttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 145  Q
    |||||||  ||||| |||||||||||| |||||||||||||||||||||    
T  3628926 tttttatagaaaatggtgcattcaatggatcgaaaattgaaatgttaaa 3628974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 41174456 - 41174421
Alignment:
Q  39 tatagggaaatgttaacaagtgctctaagggcactt 74  Q
    ||||||||||||||||||||||||||||| ||||||    
T  41174456 tatagggaaatgttaacaagtgctctaagagcactt 41174421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 22528745 - 22528821
Alignment:
Q  92 gtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttctta 168  Q
    ||||||||||||||||| || || ||| |||| |||| ||||||||   | ||||||||| || |||||||||||||    
T  22528745 gtaaatttttatgaaaatttatgtatttaatgtatcggaaattgaagcatcaaactttttcaatgaataatttctta 22528821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 25437884 - 25437968
Alignment:
Q  88 aatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaac-ttttttaaggaataatttcttaatt 171  Q
    |||||||| |||||||||||| ||||| ||| ||| ||| | |||||||| ||||  || |||||||| |||||| |||||||||    
T  25437884 aatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaactgtttcactttttttaaagaataacttcttaatt 25437968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 32730813 - 32730721
Alignment:
Q  97 tttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg 189  Q
    |||||||||||| |||||||||| ||| |||| |||| ||  | ||| |  ||||||| ||||| ||||||| ||||||| | ||||||||||    
T  32730813 tttttatgaaaatttgtgcattcgatgtatcggaaatcgagttattagatatttttaatgaatagtttcttagttgggaatcattaaagagtg 32730721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 34032142 - 34032230
Alignment:
Q  130 aaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaagagcctt 217  Q
    |||||||||| || ||||||||||| |||||||| |||| ||  |||   |||||||||| ||  ||||||||||||||||||| ||||    
T  34032142 aaattgaaatatttaacttttttaaagaataattacttattttagaatgcttaaagagtgccccaaggacactcgttaacaagaccctt 34032230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 45 - 210
Target Start/End: Original strand, 33962906 - 33963076
Alignment:
Q  45 gaaatgttaacaagtgctctaa----gggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatg 140  Q
    ||||||||||| ||||| ||||    ||||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||    
T  33962906 gaaatgttaacgagtgccctaattatgggcactctttaaggactttaaataataaatttttatgaaaaattgtgcattcaatgcattgaaaattgaagtg 33963005  T
Q  141 ttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaa 210  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||  ||||||| | ||||||||||    
T  33963006 ttaaacttttttaaagaataatttcttaattggaaaactttaaagagtgttcttaggatattcgttaacaa 33963076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 87 - 210
Target Start/End: Complemental strand, 18734449 - 18734325
Alignment:
Q  87 aaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaaga 186  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |||    
T  18734449 aaatagtaaatttttatgaaaaattgtgcattcaatgtatcggaaattgaagtgttaaacttttttaaggaataatttcttaattgagaaaccttagaga 18734350  T
Q  187 gtgcc-ttaggacactcgttaacaa 210  Q
    ||||| ||||||||||| |||||||    
T  18734349 gtgcctttaggacactcattaacaa 18734325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 184
Target Start/End: Original strand, 32438046 - 32438188
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgt 141  Q
    |||||||| ||||| |||||||| |  ||| | |||||| | ||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||    
T  32438046 agggaaatattaacgagtgctcttaatgcattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgt 32438145  T
Q  142 taaacttttttaaggaataatttcttaattgggaaactttaaa 184  Q
    ||||| |||| ||  |||||||| |||||||| |||| |||||    
T  32438146 taaaccttttcaaataataattttttaattggaaaaccttaaa 32438188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 43745776 - 43745667
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgt 141  Q
    |||||||||||||| ||||| ||||||||||| |||||||  || |||||||||  |||||||||||  |||||||||||||||| ||||||||||||||    
T  43745776 agggaaatgttaacgagtgccctaagggcactctttaagagtttaaaatagtaaggttttatgaaaacgtgtgcattcaatgcattgaaaattgaaatgt 43745677  T
Q  142 taaacttttt 151  Q
    | | ||||||    
T  43745676 ttagcttttt 43745667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 7933403 - 7933334
Alignment:
Q  75 tttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaa 144  Q
    |||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  7933403 tttaagtactttaaatagtaaatttttatgaaaaattatgcattcaatgcatcggaaattgaagtgttaa 7933334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 18375162 - 18375033
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||||||||||| ||||| | |||  || || | ||||||||| |||||||| | | ||  |||||||||| |||||||||||| ||| |||| | ||||    
T  18375162 tttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattgaaaattggagtttttgacttttttaaagaataatttctttattaggaatccttaa 18375063  T
Q  184 agagt-gccttaggacactcgttaacaaga 212  Q
    |||||  |||||||| ||||||||||||||    
T  18375062 agagtacccttaggatactcgttaacaaga 18375033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 191
Target Start/End: Complemental strand, 37597604 - 37597480
Alignment:
Q  68 ggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaactttttt---aaggaataattt 164  Q
    |||||| ||||| || |||||||| |||| |||||||  |||||||||||| ||||||| | ||||||||  || ||  ||||||   || ||| |||||    
T  37597604 ggcactatttaataactttaaataataaaattttatgggaaattgtgcatttaatgcattggaaattgaa--gtgaattttttttttcaaagaacaattt 37597507  T
Q  165 cttaattgggaaactttaaagagtgcc 191  Q
    |||||||||||||| ||||||||||||    
T  37597506 cttaattgggaaaccttaaagagtgcc 37597480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 5403645 - 5403581
Alignment:
Q  87 aaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttt 151  Q
    |||||||||  ||||||| |||  |||||||||||||||| ||||||||||||||| ||||||||    
T  5403645 aaatagtaatattttatggaaatatgtgcattcaatgcattgaaaattgaaatgtttaacttttt 5403581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 9153494 - 9153581
Alignment:
Q  98 ttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaag 185  Q
    |||||| |||| ||||| ||||||||||| | |||||||| ||||   ||||||||| |||||||||||||||| |||| | ||||||    
T  9153494 ttttataaaaatttgtgtattcaatgcattggaaattgaagtgtttgccttttttaaagaataatttcttaatttggaatccttaaag 9153581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 40347915 - 40348030
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 145  Q
    ||||||||||||||||  |  | ||||| |||||||  || ||||||||| |||||||||||| ||||| ||| ||| |||  ||||||||| ||||  |    
T  40347915 aaatgttaacaagtgccttcggagcactatttaagagcttaaaatagtaattttttatgaaaatttgtgtatttaatacattaaaaattgaactgtttga 40348014  T
Q  146 cttttttaaggaataa 161  Q
    ||||||||| ||||||    
T  40348015 cttttttaaagaataa 40348030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 4762493 - 4762399
Alignment:
Q  41 tagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaattttt-atgaaaaattgtgcattcaatgcatcgaaaatt 134  Q
    ||||||||||||||| | || |||   ||||||||||||  | |||||||||||||||||| || |||||||||| ||| ||||||| |||||||    
T  4762493 tagggaaatgttaacgaatgttcttgaggcactttttaatcactttaaatagtaaatttttaataaaaaattgtgtattgaatgcattgaaaatt 4762399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 8333577 - 8333665
Alignment:
Q  81 aaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaa 169  Q
    ||||||| || |||| ||||||| |||| ||||| |||| |||||| || ||||||||||||  ||||| |||| |||||||| |||||    
T  8333577 aaatttagatggtaagtttttataaaaatttgtgtattcgatgcattgagaattgaaatgtttgactttattaaagaataattacttaa 8333665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 13538495 - 13538416
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataattt 164  Q
    ||||||||||| |||||||||||| || || ||||||||||| | |||||||| | ||  | |||||||| |||||||||    
T  13538495 ttaaatagtaactttttatgaaaagttatgtattcaatgcattggaaattgaattatttgaattttttaaagaataattt 13538416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 28572528 - 28572587
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaattttt 101  Q
    |||||||||||||| ||||| ||||||  ||||||||| || |||||||||||| |||||    
T  28572528 agggaaatgttaacgagtgccctaaggatactttttaacaactttaaatagtaagttttt 28572587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 24765372 - 24765298
Alignment:
Q  147 ttttttaaggaataatttcttaattgggaaactttaaagagtgccttag-gacactcgttaacaagagcctttaa 220  Q
    |||||||||||||| ||||| |||| || | | ||||||||||| |||| | ||||||||||||||| |||||||    
T  24765372 ttttttaaggaatattttctaaatttgggatccttaaagagtgctttagaggcactcgttaacaagaccctttaa 24765298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 29260333 - 29260455
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||| ||||||| |||||||||||  ||| ||||| ||||||||||||||||||   ||||  ||||| ||  | || ||||||||||  ||| | ||||    
T  29260333 tttagatagtaagtttttatgaaagtttgagcatttaatgcatcgaaaattgaaggattaagttttttaaataattattttcttaattaagaatccttaa 29260432  T
Q  184 agagtgccttaggacactcgtta 206  Q
    |||||  | ||||||||||||||    
T  29260433 agagtatcctaggacactcgtta 29260455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 33455067 - 33454981
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||||||||| |||||||||||| ||||| | |||||| || | |||||||||  ||  || ||||||| ||||| ||||||||||    
T  33455067 ttaaatagtaactttttatgaaaagttgtgtaatcaatgtattgtaaattgaaaactttgacatttttaaagaatagtttcttaatt 33454981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 27922000 - 27921903
Alignment:
Q  75 tttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtta-aacttttttaaggaataatttcttaatt 171  Q
    ||||||||||||| ||| ||| |||||| | ||| || | ||||||||||||  ||||||||||| ||| |  ||||||||  |||||||||||||||    
T  27922000 tttaagaaatttagataataagtttttaaggaaatttatacattcaatgcatttaaaattgaaatattagaggttttttaataaataatttcttaatt 27921903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 24762781 - 24762857
Alignment:
Q  145 acttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaagagcctttaa 220  Q
    |||||||||||||||| ||||| |||| || | | |||||||||| ||| | | ||||||||||||||| |||||||    
T  24762781 acttttttaaggaatattttctaaatttgggatccttaaagagtgacctgaaggcactcgttaacaagaccctttaa 24762857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 26271465 - 26271513
Alignment:
Q  69 gcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcat 117  Q
    ||||| ||| |||| |||||||||||||||||||| ||||||| |||||    
T  26271465 gcactgttttagaactttaaatagtaaatttttataaaaaattatgcat 26271513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 27410219 - 27410274
Alignment:
Q  116 attcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattg 172  Q
    ||||||||||| |||||||||||| || ||| ||||||| | |||||||||||||||    
T  27410219 attcaatgcattgaaaattgaaatatttaac-tttttaatggataatttcttaattg 27410274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 32859872 - 32859756
Alignment:
Q  97 tttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttag 195  Q
    |||||||||||| ||||| ||| ||| ||| | |||||||| ||||  |||||||||| |||||| ||| |||||  | |  ||||||||||| |||  |    
T  32859872 tttttatgaaaacttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatttagcatgtttaaagagtgccctggg 32859773  T
Q  196 gacactcgttaacaaga 212  Q
    | |||||||||||||||    
T  32859772 ggcactcgttaacaaga 32859756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 44195600 - 44195520
Alignment:
Q  91 agtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||| ||||||| ||||  |||| ||| ||||||| | |||||||| | || ||||||| ||| ||||||||||||||||    
T  44195600 agtaactttttataaaaacatgtgtatttaatgcattgtaaattgaattatttaacttttgtaaagaataatttcttaatt 44195520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 43238104 - 43238251
Alignment:
Q  41 tagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatg 140  Q
    |||| |||||||||| ||||| ||||| ||||| |||||||| ||||||||||||||||||||| |||||| | |||| |||||||||||||||||| ||    
T  43238104 taggaaaatgttaacgagtgccctaagtgcactctttaagaactttaaatagtaaatttttatggaaaattctacatttaatgcatcgaaaattgaagtg 43238203  T
Q  141 ttaaacttttttaaggaataatttcttaattgggaaactttaaagagt 188  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||    
T  43238204 ttaaacttttttaaggaataatttcttaattgaaaaaccttaaagagt 43238251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 217
Target Start/End: Original strand, 20142407 - 20142579
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 145  Q
    |||||||||| |||  ||| || ||| | |||||| | |||||||| ||||||||||||  |||||||||||| ||||||||||||||| || |||||||    
T  20142407 aaatgttaacgagtattcttagagcattatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgttaaa 20142506  T
Q  146 cttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaagagcctt 217  Q
    |||||| ||  ||||||||||||||||  | || |||||||||| ||||||||||||||||||||||| ||||    
T  20142507 ctttttaaaaaaataatttcttaattgaaataccttaaagagtgtccttaggacactcgttaacaagaccctt 20142579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 64 - 207
Target Start/End: Original strand, 33285911 - 33286054
Alignment:
Q  64 taagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatt 163  Q
    ||||| ||| ||||||| | ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||| ||  |||||||    
T  33285911 taaggacacgttttaaggactttaaatagtaaatttttatgaaaaattgtgtatttaatacatcgaaaattgaaatgttaaattttttcaaaaaataatt 33286010  T
Q  164 tcttaattgggaaactttaaagagtgccttaggacactcgttaa 207  Q
    |||||||||  |||| |||||||||| | || |||||| |||||    
T  33286011 tcttaattgataaaccttaaagagtgtcataagacactagttaa 33286054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 23984354 - 23984252
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||||||||||||||||||||||||||||||| |||| || ||| ||||||||  |||||||||||||||| |||||||||||||||||  |||||||||    
T  23984354 tttaaatagtaaatttttatgaaaaattgtgctttcagtgtatcaaaaattgaggtgttaaacttttttaaagaataatttcttaattgaaaaactttaa 23984255  T
Q  184 aga 186  Q
    |||    
T  23984254 aga 23984252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 14237267 - 14237140
Alignment:
Q  45 gaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaa 144  Q
    ||||| ||||| ||||| || || ||| | |||||| | ||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||    
T  14237267 gaaatattaacgagtgcccttagagcattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaa 14237168  T
Q  145 acttttttaaggaataatttcttaattg 172  Q
    |||||| || |||||||||| |||||||    
T  14237167 acttttatatggaataattttttaattg 14237140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 14855590 - 14855711
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||||||| ||||||||||||||||| ||| ||||  |||||||| |||||||| ||||||||||||| || ||||||||| ||||| ||||||| ||||    
T  14855590 tttaaataataaatttttatgaaaaagtgtccatttgatgcatcgtaaattgaagtgttaaactttttcaaagaataattttttaatagggaaaccttaa 14855689  T
Q  184 agagtg-ccttaggacactcgt 204  Q
    | |||| |||||||||||||||    
T  14855690 aaagtgtccttaggacactcgt 14855711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 210
Target Start/End: Complemental strand, 44042680 - 44042510
Alignment:
Q  40 atagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaat 139  Q
    |||| |||||||||||||||| | |||||  | |||||||  | |||||||||||| |||||||  ||| ||||||||||||||||| | |||||||| |    
T  44042680 atagagaaatgttaacaagtgtt-taaggatattttttaaagattttaaatagtaagtttttatagaaatttgtgcattcaatgcattggaaattgaagt 44042582  T
Q  140 gttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaa 210  Q
     || |||||||| || ||||| ||||||||||  ||| | |||||||||| ||||||| |||||||||||||    
T  44042581 attgaactttttcaatgaatagtttcttaattatgaatccttaaagagtgtccttagggcactcgttaacaa 44042510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 44254095 - 44254267
Alignment:
Q  45 gaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaa 144  Q
    ||||||||||||||||| || | | || ||||||  || |||||||||||| ||||| | |||| || || | ||||||||| | |||||||| | ||      
T  44254095 gaaatgttaacaagtgcccttaagaca-tttttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattggaaattgaagtttttg 44254193  T
Q  145 acttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaagagcctt 217  Q
    |||||||||||||| |||||||| ||| | || | |||||||||| ||||||||||||||||||||||| ||||    
T  44254194 acttttttaaggaagaatttctttattagaaatccttaaagagtgcccttaggacactcgttaacaagaccctt 44254267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 210
Target Start/End: Complemental strand, 10565445 - 10565318
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||| |||||||||||||||| ||| ||||||||||||| |||| |||||| || | ||| ||||||| || ||||| ||||||||||  |||   ||||    
T  10565445 tttagatagtaaatttttatggaaatttgtgcattcaatacatcaaaaattaaagtattagactttttcaatgaatagtttcttaatttagaattcttaa 10565346  T
Q  184 agagtg-ccttaggacactcgttaacaa 210  Q
    ||||||  ||||||||||||||||||||    
T  10565345 agagtgttcttaggacactcgttaacaa 10565318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 4166582 - 4166468
Alignment:
Q  97 tttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttag 195  Q
    |||||||| ||| |||||||||||||| || | |||||||||| || |||||||| || |||||||||||| |||  ||| | |||||||||| ||||||    
T  4166582 tttttatggaaacttgtgcattcaatgtattggaaattgaaatattgaactttttcaatgaataatttcttgattatgaatccttaaagagtgcccttag 4166483  T
Q  196 gacactcgttaacaa 210  Q
    || ||||||||||||    
T  4166482 gaaactcgttaacaa 4166468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 11078174 - 11078116
Alignment:
Q  70 cactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcg 128  Q
    ||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  11078174 cactttttaagaactctaaatagtaaatttttatgaaaaattatgcattcaatgcatcg 11078116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 39691121 - 39691247
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaa 184  Q
    ||||||||||| |||||||||||| ||||| ||||||||||| |||||||||| | ||  |||||||||| ||||||||| |||||  ||||   |||||    
T  39691121 ttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaatgtggaatgcttaaa 39691220  T
Q  185 gagtgcct-taggacactcgttaacaa 210  Q
    ||||| ||  ||| |||||||||||||    
T  39691221 gagtgtctcgagggcactcgttaacaa 39691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 32332940 - 32332824
Alignment:
Q  97 tttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtgcc-ttag 195  Q
    |||||||||||| || | ||||||||||||||||||| ||| | |||||| |||| || ||||||||| |||||| |||| ||||||||||| || |||     
T  32332940 tttttatgaaaacttatacattcaatgcatcgaaaatcgaagtattaaacattttcaatgaataattttttaattaggaatctttaaagagtaccattaa 32332841  T
Q  196 gacactcgttaacaaga 212  Q
     |||||||||| |||||    
T  32332840 aacactcgttagcaaga 32332824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 41106005 - 41106096
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaa 176  Q
    |||||| |||| |||||| ||||||||||| ||||||||||| |||||||||| | ||  |||||||||| || ||||||||||||| ||||    
T  41106005 ttaaatggtaagtttttacgaaaaattgtgaattcaatgcattgaaaattgaactatttgacttttttaatgattaatttcttaatttggaa 41106096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 40464418 - 40464520
Alignment:
Q  88 aatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagag 187  Q
    |||||||||||||||||  || ||||||||||||  |||||||||||||||| |||||| |||| || ||||| ||| ||||||| ||| ||| || |||    
T  40464418 aatagtaaatttttatggtaacttgtgcattcaaaacatcgaaaattgaaatattaaacattttcaatgaatagttttttaattgagaatcttgaacgag 40464517  T
Q  188 tgc 190  Q
    |||    
T  40464518 tgc 40464520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 6904309 - 6904192
Alignment:
Q  43 gggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtt 142  Q
    |||||||| |||  |||||||| |||||||| |||||  | |||| ||||||| |||||||| ||| |||||| |||||||||||| ||||||||   ||    
T  6904309 gggaaatgctaatgagtgctcttagggcactctttaaagactttagatagtaattttttatggaaacttgtgcgttcaatgcatcggaaattgaagcatt 6904210  T
Q  143 aaacttttttaaggaata 160  Q
    ||||||||| || |||||    
T  6904209 aaactttttcaatgaata 6904192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 31265139 - 31265010
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgt 141  Q
    |||||||||||||| |||||||   ||||||| |||||||   | ||||||||| |||||||||||| ||||| ||| ||| ||| | |||||||| |||    
T  31265139 agggaaatgttaacgagtgctcccggggcactctttaagagcctaaaatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaattgt 31265040  T
Q  142 taaacttttttaaggaataatttcttaatt 171  Q
    |  |||||||||| |||||| ||| |||||    
T  31265039 ttgacttttttaaagaataacttcctaatt 31265010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 29487065 - 29487195
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtt-aaacttttttaaggaataatttcttaattgggaaacttta 182  Q
    ||||| |||||| ||||||| ||||  |||| ||| ||||||| |||||||||| | || |||||||||||| ||||||||||||||||  |||  || |    
T  29487065 tttaagtagtaactttttataaaaatatgtgtattaaatgcattgaaaattgaactatttaaacttttttaaagaataatttcttaatttagaatattaa 29487164  T
Q  183 aagagtgccttag-gacactcgttaacaaga 212  Q
    ||||||||| | |  ||||||||||||||||    
T  29487165 aagagtgccctggaaacactcgttaacaaga 29487195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 31844285 - 31844352
Alignment:
Q  145 acttttttaaggaataatttcttaattgggaaactttaaagagtgccttaggacactcgttaacaaga 212  Q
    ||||||||||||||||||| |||||||  |||  ||||||||||||| | || |||||||||||||||    
T  31844285 acttttttaaggaataattacttaatttagaatatttaaagagtgccctggggcactcgttaacaaga 31844352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 33650150 - 33649979
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgt 141  Q
    |||||||||||||||||||| || |||||| | ||||  || |||||||||||| ||||| | ||||  | || | ||||||||| | |||||  | | |    
T  33650150 agggaaatgttaacaagtgcccttagggcattgtttagtaactttaaatagtaagtttttgtcaaaatgtatgaaatcaatgcattggaaattagagttt 33650051  T
Q  142 taaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaaga 212  Q
    || |||||||| | |||||||||||| ||| | ||   |||||||||| ||||||| |||||||| ||||||    
T  33650050 tagactttttttaagaataatttctttattagaaattcttaaagagtgtccttagggcactcgttgacaaga 33649979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 41385407 - 41385236
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgt 141  Q
    |||||||||||||| ||||| |   ||||||| ||||||   | ||||||||||| |||| |||||| ||||| | ||||| ||| |||||||||||  |    
T  41385407 agggaaatgttaacgagtgcccccggggcactctttaagggttataaatagtaaaattttgtgaaaatttgtgtaatcaatacattgaaaattgaaacat 41385308  T
Q  142 taaacttttttaaggaataatttcttaattgggaaactttaaagagtgcct-taggacactcgttaacaaga 212  Q
       ||||| |||||||||||||||||| || |||    ||||||| |||||   ||||||||||||||||||    
T  41385307 ctgactttcttaaggaataatttcttattttggattgcttaaagaatgcctcggggacactcgttaacaaga 41385236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 4507898 - 4508048
Alignment:
Q  63 ctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataat 162  Q
    |||||| ||||||||||||| |||| || |||| |||||||| ||| ||  ||||| ||||||||  |||||||||| | |   ||||| ||  |||| |    
T  4507898 ctaaggacactttttaagaactttagatggtaagtttttatggaaacttacgcatttaatgcatcagaaattgaaatatgatgttttttcaataaatagt 4507997  T
Q  163 ttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaaga 212  Q
    ||||||||||   | | |||||||||| ||||||||||||||||| |||||    
T  4507998 ttcttaattgactatccttaaagagtgcccttaggacactcgttagcaaga 4508048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 24457938 - 24457840
Alignment:
Q  73 tttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||||| || |||||||||||| |||||||||||| |||||| || |||||||   |||||||||  ||| ||||||| || ||||| ||| ||||||    
T  24457938 tttttaaaaactttaaatagtaagtttttatgaaaacttgtgcttttaatgcatttgaaattgaaacattagactttttcaatgaatagttttttaatt 24457840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 26750693 - 26750608
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaa-atttttatgaaaaattgtgcattcaatgcat 126  Q
    |||||||||||||| ||||| ||  | ||||| |||||| | |||||||||||| ||||| |||||||||| |||||| |||||||    
T  26750693 agggaaatgttaacgagtgcgctcggagcactctttaagcactttaaatagtaagattttaatgaaaaattatgcattgaatgcat 26750608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 44411051 - 44411156
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 145  Q
    |||||||||  ||||| || |||||||| |||| |   || |||||||||  |||||| ||||  |||||||||||| ||| ||||||||||||||| ||    
T  44411051 aaatgttaatgagtgcccttagggcactctttatgggtttaaaatagtaatattttatcaaaatgtgtgcattcaatacattgaaaattgaaatgtttaa 44411150  T
Q  146 cttttt 151  Q
    ||||||    
T  44411151 cttttt 44411156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 189
Target Start/End: Original strand, 1502682 - 1502782
Alignment:
Q  90 tagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatg-ttaaacttttttaaggaataatttcttaattgggaaactttaaagagt 188  Q
    |||||| |||||||||||| ||| | ||| ||||||| |||||||||| || || || |||||||| |||||||||| |||||  |||  ||||||||||    
T  1502682 tagtaattttttatgaaaatttgcgtatttaatgcattgaaaattgaactgtttgaatttttttaaagaataatttcctaatttagaatgtttaaagagt 1502781  T
Q  189 g 189  Q
    |    
T  1502782 g 1502782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 212
Target Start/End: Complemental strand, 12787967 - 12787819
Alignment:
Q  65 aagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataattt 164  Q
    ||||||||| |||||  | |||| ||||||| |||||||||||| ||||||||| |||| || | ||||||||   ||| ||||||| ||  ||||||||    
T  12787967 aagggcactctttaaatagtttagatagtaagtttttatgaaaatttgtgcatttaatgaattggaaattgaagcattatactttttcaataaataattt 12787868  T
Q  165 cttaattgggaaactttaaagagt-gccttaggacactcgttaacaaga 212  Q
     ||||||  |||   |||||||||   |||| |||||||||||||||||    
T  12787867 tttaatttagaattcttaaagagtattcttaagacactcgttaacaaga 12787819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 30674943 - 30675007
Alignment:
Q  87 aaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttt 151  Q
    |||||||||  ||||||| |||  |||||||||||||||| | ||||||||||||| ||||||||    
T  30674943 aaatagtaatattttatggaaatatgtgcattcaatgcattgtaaattgaaatgtttaacttttt 30675007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 34336479 - 34336607
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||||||||||| ||||| | |||  || || | ||||||||| | |||||||| | ||  |||||||||| |||||||||||| |||  ||| | ||||    
T  34336479 tttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttttgacttttttaaagaataatttctttattaagaatccttaa 34336578  T
Q  184 agagtgccttaggacactcgttaacaaga 212  Q
    ||||||| | ||| || ||||||||||||    
T  34336579 agagtgcataagggcaatcgttaacaaga 34336607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 40914582 - 40914630
Alignment:
Q  89 atagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaa 137  Q
    |||||||||||||||||||| ||||| ||| ||||||| ||||||||||    
T  40914582 atagtaaatttttatgaaaatttgtgaatttaatgcattgaaaattgaa 40914630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 37564342 - 37564425
Alignment:
Q  88 aatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||||||  ||||||||||| ||||| ||| ||| ||| | |||||||| | ||  |||||||||| ||||||||||||||||    
T  37564342 aatagtaaccttttatgaaaacttgtgtatttaatacattggaaattgaactatttgacttttttaaagaataatttcttaatt 37564425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 39312194 - 39312245
Alignment:
Q  116 attcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttctt 167  Q
    ||||||||||||| |||||||| | ||||||||||| || ||||||||||||    
T  39312194 attcaatgcatcggaaattgaagtattaaactttttcaatgaataatttctt 39312245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 40852100 - 40852155
Alignment:
Q  87 aaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtt 142  Q
    ||||||||| ||||||||||||  |||  ||||||||||| |||||||||||||||    
T  40852100 aaatagtaagtttttatgaaaatatgtatattcaatgcattgaaaattgaaatgtt 40852155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 1162747 - 1162824
Alignment:
Q  93 taaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||||||||| |||||||||||||| |||| || ||||| |||| | ||| ||||||||||  ||| |||||||||||    
T  1162747 taaatttttataaaaaattgtgcatttaatgtatggaaaagtgaagtattagacttttttaataaat-atttcttaatt 1162824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 15546810 - 15546764
Alignment:
Q  43 gggaaatgttaacaagtgctctaagggcactttttaagaaatttaaa 89  Q
    ||||||||||| |||||||||| ||||||||| |||||||| |||||    
T  15546810 gggaaatgttagcaagtgctcttagggcacttgttaagaaacttaaa 15546764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 27801189 - 27801283
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaattttt-atgaaaaattgtgcattcaatgcatcgaaaattg 135  Q
    |||||||||||||| ||||||||  ||| ||| |||||| | |||||||||||| ||||| || |||| ||||| | | ||||||| ||||||||    
T  27801189 agggaaatgttaacgagtgctcttggggtactctttaagcactttaaatagtaagtttttaataaaaagttgtgtaatgaatgcattgaaaattg 27801283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 41429595 - 41429652
Alignment:
Q  70 cactttttaagaaatttaaatagtaaatt-tttatgaaaaattgtgcattcaatgcat 126  Q
    |||| |||||| |||||||||| ||| || |||||||||||||||| |||||||||||    
T  41429595 cactctttaagcaatttaaatattaatttgtttatgaaaaattgtgtattcaatgcat 41429652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 44960581 - 44960516
Alignment:
Q  66 agggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaa 131  Q
    |||||||| |||||| | ||| ||||||||||||||||||||| || || | ||||||||| ||||    
T  44960581 agggcactctttaagcacttttaatagtaaatttttatgaaaatttatgtaatcaatgcattgaaa 44960516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 45368767 - 45368836
Alignment:
Q  122 tgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtgcc 191  Q
    |||||||||||||||||| || ||||||||||   |||||||||||  || |||| | ||||||||||||    
T  45368767 tgcatcgaaaattgaaatatttaacttttttataaaataatttctttttttggaatccttaaagagtgcc 45368836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 13521861 - 13521809
Alignment:
Q  37 aatatagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaa 89  Q
    |||| ||||||||||||||||||||||| ||||||| |  |||||| ||||||    
T  13521861 aataaagggaaatgttaacaagtgctcttagggcacctgataagaagtttaaa 13521809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 40380123 - 40380195
Alignment:
Q  67 gggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaat 139  Q
    ||||||| ||||| | ||||||| | ||| |||||   ||||||| |||| ||||||||||||||||||||||    
T  40380123 gggcactctttaacacatttaaacaataatttttttaaaaaaattatgcaatcaatgcatcgaaaattgaaat 40380195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 43 - 189
Target Start/End: Original strand, 38949024 - 38949170
Alignment:
Q  43 gggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtt 142  Q
    ||||||||||||| |||| | |||||||||| |||||| | || |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  38949024 gggaaatgttaacgagtgttttaagggcactctttaaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgcatcggaaattgaagtgtt 38949123  T
Q  143 aaacttttttaaggaataatttcttaattgggaaactttaaagagtg 189  Q
    ||| ||||||||| |||||||| |||||||| |||  ||||||||||    
T  38949124 aaatttttttaagaaataattttttaattggaaaatcttaaagagtg 38949170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 39 - 186
Target Start/End: Complemental strand, 38380603 - 38380456
Alignment:
Q  39 tatagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaa 138  Q
    ||||||||||||||||| |  |||||  ||||| | |||||| | ||||||||||||||||||||| |||||| |||||| ||||| ||| ||||||||     
T  38380603 tatagggaaatgttaacgaacgctcttggggcattctttaaggactttaaatagtaaatttttatggaaaattatgcatttaatgcttcggaaattgaag 38380504  T
Q  139 tgttaaacttttttaaggaataatttcttaattgggaaactttaaaga 186  Q
    ||||||||||||| || ||| ||||| |||||||||||||||||||||    
T  38380503 tgttaaactttttcaaagaaaaatttattaattgggaaactttaaaga 38380456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 39804851 - 39804997
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttt-tatgaaaaattgtgcattcaatgcatcgaaaattgaaatg 140  Q
    ||||||||||||||||||||| | |||||| | ||||| || ||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||| ||    
T  39804851 agggaaatgttaacaagtgcttttagggcattctttaa-aactttaaatagtaaattttttatgaaaaattgtgcatttaatgtatcaaaaattgaagtg 39804949  T
Q  141 ttaaacttttttaaggaataatttcttaattgggaaactttaaagagt 188  Q
    ||||| ||||| ||  |||||||| |||||||| |||| |||||||||    
T  39804950 ttaaattttttcaaataataattttttaattggaaaaccttaaagagt 39804997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 41370135 - 41370261
Alignment:
Q  45 gaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaa 144  Q
    ||||||||||||||| ||||   ||||||||||||| | ||| |||||||| |||||||||||| ||||| | ||||||||| |||||||||||| || |    
T  41370135 gaaatgttaacaagttctctcgaggcactttttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatattta 41370234  T
Q  145 acttttttaaggaataatttcttaatt 171  Q
    |||||||| || |||||||||||||||    
T  41370235 acttttttgagaaataatttcttaatt 41370261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 32893111 - 32892986
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaa-cttta 182  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| ||||||||||  ||| ||| |    
T  32893111 tttaaatagtaaacttttatagaaaattgtgcattcaatgcatcgaaaattgaaatgttaaactttttttaaaaataaattcttaattgaaaaaccttaa 32893012  T
Q  183 aagagtg-ccttaggacactcgttaa 207  Q
    ||||||| |||||  |||||||||||    
T  32893011 aagagtgtccttaaaacactcgttaa 32892986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 31655581 - 31655474
Alignment:
Q  106 aaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgt 204  Q
    ||||||||||||||||| ||||| | |||||| |||||||||||||||| ||||||||| ||||||||||||| ||||| |||| ||| ||| |||||||    
T  31655581 aaaattgtgcattcaatacatcggatattgaagtgttaaacttttttaaagaataattttttaattgggaaaccttaaaaagtgccctaagggcactcgt 31655482  T
Q  205 taacaaga 212  Q
    ||||||||    
T  31655481 taacaaga 31655474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 206
Target Start/End: Complemental strand, 7388918 - 7388752
Alignment:
Q  41 tagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatg 140  Q
    |||||||||| |||  ||||| ||  || ||||||||||||| |||| |||||||||||||||| ||| ||||||||| ||||||||| |||||| ||      
T  7388918 tagggaaatgctaatgagtgccctcgggacactttttaagaactttagatagtaaatttttatggaaacttgtgcatttaatgcatcggaaattggaaca 7388819  T
Q  141 ttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgtta 206  Q
    ||| ||||||| || | ||| ||||||||||||||| |||| ||||||| ||||||| |||| ||||    
T  7388818 ttagactttttcaatggatattttcttaattgggaatctttcaagagtgaccttagggcacttgtta 7388752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 19652774 - 19652604
Alignment:
Q  43 gggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtt 142  Q
    ||||||||||||| | |||| | |||||||| |||||  | |||| ||||||| |||||||||||| ||||||||||||||||| | ||||| || | ||    
T  19652774 gggaaatgttaacgaatgcttttagggcactctttaaatattttagatagtaagtttttatgaaaatttgtgcattcaatgcattggaaattaaactatt 19652675  T
Q  143 aaacttttttaaggaataatttcttaattgggaaactttaaagagtgc-cttaggacactcgttaacaaga 212  Q
    | || |||| || ||||||| ||||||||  ||||| ||||||||||| ||||||| ||| ||||||||||    
T  19652674 atacattttcaatgaataatatcttaatttagaaaccttaaagagtgctcttaggatacttgttaacaaga 19652604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 23133038 - 23133148
Alignment:
Q  72 ctttttaagaaatttaaatagtaaat----ttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttctt 167  Q
    |||||||| || |||||||||||||     ||||||  ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  23133038 ctttttaataactttaaatagtaaaaaaaattttatagaaaattgtgtattcaatgcatcggaaattgaagtgttaaacttttttaaggaataatttctt 23133137  T
Q  168 aattgggaaac 178  Q
    ||||| |||||    
T  23133138 aattgagaaac 23133148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 206
Target Start/End: Original strand, 49011879 - 49012012
Alignment:
Q  74 ttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgg 173  Q
    ||||||| | |||||||||||| ||||| |||||| ||||||||| |||||||||||||||||| | |||||||||||||| |||||  ||||| |||      
T  49011879 ttttaaggactttaaatagtaagtttttgtgaaaacttgtgcatttaatgcatcgaaaattgaagtattaaacttttttaatgaatagattcttgattaa 49011978  T
Q  174 gaaactttaaagagtgc-cttaggacactcgtta 206  Q
     || | ||||||||||| |||||| |||||||||    
T  49011979 aaatccttaaagagtgcacttaggtcactcgtta 49012012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 34469556 - 34469632
Alignment:
Q  67 gggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtta 143  Q
    ||||||| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  34469556 gggcactctttaaaaactttaaataataaatttttatgaaaaattgtgcatttaatgcatcggaaattgaaatgtta 34469632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 36721592 - 36721721
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaactttt-ttaaggaataatttcttaattgggaaacttta 182  Q
    |||||||||||| |||||||| ||| ||||| | ||||||||| || ||||||||| ||  |||||| ||||||||||| |||||| || |||   ||||    
T  36721592 tttaaatagtaagtttttatggaaatttgtgtaatcaatgcattgagaattgaaatatttgactttttttaaggaataacttcttatttcggattattta 36721691  T
Q  183 aagagtgccttaggacactcgttaacaaga 212  Q
    |||||||  || ||||||||||||||||||    
T  36721692 aagagtgatttgggacactcgttaacaaga 36721721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 41956440 - 41956520
Alignment:
Q  88 aatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttctta 168  Q
    ||||||||||||||||||||||||||| | ||||||| | |||||||||||| || || ||| |||| ||||| |||||||    
T  41956440 aatagtaaatttttatgaaaaattgtgtaatcaatgcgttgaaaattgaaatatttaaatttcttaaagaatactttctta 41956520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 210
Target Start/End: Complemental strand, 5047343 - 5047177
Alignment:
Q  45 gaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaa 144  Q
    |||||||||||||||| ||| |||| | | ||||  || |||||||||||| ||||| | |||  || || | ||||||||| | |||||||||| ||      
T  5047343 gaaatgttaacaagtgttcttagggtattgtttagtaactttaaatagtaagttttttttaaagtttatgaaatcaatgcattggaaattgaaatttttg 5047244  T
Q  145 acttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaa 210  Q
    |||||| ||| |||||||||||| ||| | || | |||| ||||| ||||||| |||||||||||||    
T  5047243 acttttgtaatgaataatttctttattagaaatccttaatgagtgcccttagggcactcgttaacaa 5047177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 50131101 - 50131031
Alignment:
Q  143 aaacttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaaga 212  Q
    ||||||||| || ||||||||||||||||||||||| ||||||| || ||| ||| |||||||||||||||    
T  50131101 aaactttttcaaagaataatttcttaattgggaaaccttaaagaatgccctcagggcactcgttaacaaga 50131031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 55855254 - 55855178
Alignment:
Q  75 tttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaa 154  Q
    |||||| | |||||||| |||||||||||||||||| ||| ||| ||||  |||||||||||| ||||||||||||||||    
T  55855254 tttaaggactttaaataataaatttttatgaaaaatcgtg-atttaatg--tcgaaaattgaagtgttaaacttttttaa 55855178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 46521604 - 46521465
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||||||| ||||||||| | |||  || || | |||||||||  ||||||| | | || ||||||||||| ||||||||| || ||| |||| | ||||    
T  46521604 tttaaataataaatttttgttaaagtttatgaaatcaatgcattaaaaattggagtttttaacttttttaaagaataatttatttattaggaatccttaa 46521505  T
Q  184 agagtgc-cttaggacactcgttaacaagagcctttaata 222  Q
    ||||||| || ||| ||||||||||||||| |||| ||||    
T  46521504 agagtgctctaagggcactcgttaacaagacccttaaata 46521465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 23135502 - 23135568
Alignment:
Q  147 ttttttaaggaataatttcttaattgggaaactttaaagagtgc-cttaggacactcgttaacaaga 212  Q
    |||||||||||||||||| || ||| | || | ||||||||||| ||||||||||||||||||||||    
T  23135502 ttttttaaggaataatttttttattagaaatccttaaagagtgcacttaggacactcgttaacaaga 23135568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 48098051 - 48097965
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||||||||| ||||||| ||||  |||| ||| |||| || | |||||||| | || ||||||||||| ||||||||||||||||    
T  48098051 ttaaatagtaactttttataaaaacatgtgtatttaatgtattggaaattgaactatttaacttttttaaagaataatttcttaatt 48097965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 51291229 - 51291051
Alignment:
Q  41 tagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatg 140  Q
    ||||||||||||||| ||||| |   ||||||| |||||| |  | |||| ||||  ||||||||||  ||||||||| | ||||| | |||||||| |     
T  51291229 tagggaaatgttaacgagtgccccgggggcactctttaagcacctaaaatggtaagattttatgaaagtttgtgcatttattgcattggaaattgaagtc 51291130  T
Q  141 ttaaacttttttaaggaataatttcttaattgggaaactttaaagagtgcct-taggacactcgttaacaagagccttt 218  Q
    || || | |||||| |||||| ||||| ||| ||||  ||||||||||||||  ||| || |||||||||||| |||||    
T  51291129 tttaattattttaaagaataacttcttcattaggaatgtttaaagagtgcctcgagggcattcgttaacaagacccttt 51291051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 52650697 - 52650783
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||||||||| |||||||||||||||||| | ||| || || |||||||||||  ||  || ||| ||| ||||||||||||||||    
T  52650697 ttaaatagtaattttttatgaaaaattgtgtaatcagtgaattgaaaattgaaaattttgacatttgtaaagaataatttcttaatt 52650783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 31690483 - 31690431
Alignment:
Q  84 tttaaatagtaaattt-ttatgaaaaattgtgcattcaatgcatcgaaaattg 135  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||    
T  31690483 tttaaatagtaaatttcttatgaaaagttgtgtattcaatgcattgaaaattg 31690431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 41415715 - 41415799
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcat 126  Q
    |||||||| ||||| ||||||||| | ||||| ||||||||   | |||||||||||||||| |||||||||  | |||||||||    
T  41415715 agggaaatattaacgagtgctctaggagcactctttaagaaccattaatagtaaatttttataaaaaattgtttaatcaatgcat 41415799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 2063571 - 2063488
Alignment:
Q  88 aatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    |||||||| |||||||||||| ||||| ||| ||| ||| | |||||||| ||||  |||||||||| |||||| ||| |||||    
T  2063571 aatagtaactttttatgaaaatttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatt 2063488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 24981873 - 24981763
Alignment:
Q  103 tgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtgcctta-ggacact 201  Q
    |||||||||||| | |||||||||   || ||| || ||| ||||||||||| ||||| ||||| |||| | || ||||||| |||| || | |||||||    
T  24981873 tgaaaaattgtgtaatcaatgcatttgaatttgtaacgtttaacttttttaaagaatattttctaaatttgaaatctttaaaaagtgtctcagggacact 24981774  T
Q  202 cgttaacaaga 212  Q
    |||||||||||    
T  24981773 cgttaacaaga 24981763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 28695875 - 28695737
Alignment:
Q  75 tttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattggg 174  Q
    ||||| || |||||||||||||||||| | |||  || || | | ||| ||| | |||||||| | ||  ||||||||||  ||||||||||| ||| |     
T  28695875 tttaataactttaaatagtaaatttttgtcaaagtttatgaaattaatacattggaaattgaagtttttgacttttttaaaaaataatttctttattagt 28695776  T
Q  175 aaactttaaagagtgcc-ttaggacactcgttaacaaga 212  Q
    || | |||||||||||| ||||| |||||||||||||||    
T  28695775 aatccttaaagagtgcccttagggcactcgttaacaaga 28695737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 45743414 - 45743328
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||||||||| | |||||||||| ||||| | ||| || || |||||||||||  ||  || ||||||| ||||||||||||||||    
T  45743414 ttaaatagtaactctttatgaaaagttgtgtaatcactgtattgaaaattgaaaactttgacatttttaaagaataatttcttaatt 45743328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 1696180 - 1696277
Alignment:
Q  70 cactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttctt 167  Q
    |||| |||||||  |||||||||||| ||||| ||||||  | || | ||||||||||| |||||||||| ||   |||||||| |||||||| ||||    
T  1696180 cactctttaagacttttaaatagtaactttttttgaaaatgtatgtaatcaatgcatcggaaattgaaatatttgtcttttttatggaataatatctt 1696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 7852532 - 7852601
Alignment:
Q  67 gggcactttttaagaaatttaaatagtaaattttt-atgaaaaattgtgcattcaatgcatcgaaaattg 135  Q
    ||||||| |||||| | |||||||||||| ||||| ||||||| ||||| ||| ||||||| ||||||||    
T  7852532 gggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattgaaaattg 7852601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 38682771 - 38682670
Alignment:
Q  70 cactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaa 169  Q
    |||| |||||||| |||| ||| ||||||||||| |||| ||| | |||  |||||||  |||||||| | ||| || ||||||| ||||| ||||||||    
T  38682771 cactctttaagaactttagatattaaatttttataaaaatttgcgtatttgatgcatcagaaattgaagtattacacatttttaatgaatattttcttaa 38682672  T
Q  170 tt 171  Q
    ||    
T  38682671 tt 38682670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 50086373 - 50086518
Alignment:
Q  43 gggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtt 142  Q
    ||||||||||||| |||||||   ||||||| |||||||| | ||| | ||||   ||||||||||  |||| ||||||||||| ||||||  |||| ||    
T  50086373 gggaaatgttaacgagtgctcccggggcactctttaagaactataagtggtaagcatttatgaaaatatgtgtattcaatgcattgaaaatcaaaatatt 50086472  T
Q  143 aaacttttttaaggaataatttcttaattgggaaactttaaagagt 188  Q
      | |||||||| ||||||||  ||| || ||||  ||||||||||    
T  50086473 tgatttttttaaagaataattgtttattttggaatgtttaaagagt 50086518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 23016260 - 23016320
Alignment:
Q  116 attcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaa 176  Q
    ||||||||||| | |||||||||||||  |||| |||||  ||||||||||||||| ||||    
T  23016260 attcaatgcattggaaattgaaatgtttgacttctttaaataataatttcttaatttggaa 23016320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 25751698 - 25751790
Alignment:
Q  75 tttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttctt 167  Q
    ||||| || |||||||||||| ||||||| |||  || |||| | ||||||| ||||||| || | ||  |||||||||| ||||||||||||    
T  25751698 tttaataactttaaatagtaagtttttattaaagcttatgcaattaatgcattgaaaattaaattttttgacttttttaaagaataatttctt 25751790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 171
Target Start/End: Complemental strand, 40252772 - 40252669
Alignment:
Q  67 gggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttct 166  Q
    |||||||  ||||| | ||||||||||||||||||||| ||| ||||| | |||||| || |||||||||||  || ||| |||||||  || |||| ||    
T  40252772 gggcactggttaaggactttaaatagtaaatttttatg-aaagttgtgtaatcaatgtattgaaaattgaaaactttaacatttttaaataacaattact 40252674  T
Q  167 taatt 171  Q
    |||||    
T  40252673 taatt 40252669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 54495581 - 54495450
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaa--cttt 181  Q
    |||||||||||| ||||||| |||  || || | ||||||||| |||||||| | | || |||||||||||  ||||||||||| |||   |||  ||||    
T  54495581 tttaaatagtaagtttttatcaaagtttatgaaatcaatgcattgaaaattggagtttttaacttttttaaaaaataatttctttattaaaaaaatcttt 54495482  T
Q  182 aaagagt-gccttaggacactcgttaacaaga 212  Q
    ||||| | |||||||  |||||||||||||||    
T  54495481 aaagaatagccttagagcactcgttaacaaga 54495450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 3973950 - 3973784
Alignment:
Q  46 aaatgttaacaagtgctctaagggcact-ttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaa 144  Q
    |||||||||| ||||| ||  ||||||| ||||||| | || |||||||||||||||||| ||||||||||||| ||||||||| ||||||||  ||| |    
T  3973950 aaatgttaacgagtgccct--gggcactcttttaaggacttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagcgttga 3973853  T
Q  145 acttttttaaggaataatttcttaattgggaaactttaaagagtgc-cttaggacactcgttaacaaga 212  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||    
T  3973852 acttttttaaggaataatttcttaattgggaaaccttaaagagtgctcttagggcacttgttaacaaga 3973784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 212
Target Start/End: Original strand, 3995924 - 3996093
Alignment:
Q  43 gggaaatgttaacaagtgctctaagggcact-ttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgt 141  Q
    ||||||||||||| ||||| ||  ||||||| ||||||| | || |||||||||||||||||| ||||||||||||| ||||||||| ||||||||  ||    
T  3995924 gggaaatgttaacgagtgccct--gggcactcttttaaggacttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagcgt 3996021  T
Q  142 taaacttttttaaggaataatttcttaattgggaaactttaaagagtgc-cttaggacactcgttaacaaga 212  Q
    | |||||||||||||||||||| |||||||||||||| ||||||||||| |||||| |||| ||||||||||    
T  3996022 tgaacttttttaaggaataattgcttaattgggaaaccttaaagagtgctcttagggcacttgttaacaaga 3996093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 87 - 212
Target Start/End: Original strand, 4009495 - 4009621
Alignment:
Q  87 aaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaaga 186  Q
    ||||||||||||||| || ||||||||||||| ||||||||| ||||||||  ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  4009495 aaatagtaaatttttgtggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttttaaggaataatttcttaattgggaaaccttaaaga 4009594  T
Q  187 gtgc-cttaggacactcgttaacaaga 212  Q
    |||| |||||| |||| ||||||||||    
T  4009595 gtgctcttagggcacttgttaacaaga 4009621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 49682309 - 49682179
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgt 141  Q
    |||||||||||||| | ||  ||||| | | |||||||| | ||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||||    
T  49682309 agggaaatgttaacgaatgtcctaagagtattttttaaggactttaaatagtaaatttttatagaaaattgtgcattcaatgcttcggaaattgaaatgt 49682210  T
Q  142 taaacttttttaaggaataatttcttaattg 172  Q
    ||||||||||||||||||||||| |||||||    
T  49682209 taaacttttttaaggaataattttttaattg 49682179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 21813124 - 21813256
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 145  Q
    |||||||||  ||||  ||||||||||| |||||| | ||||||||||||||||||||| |||||| |||||||||||||||| || || || |||||||    
T  21813124 aaatgttaatgagtgtcctaagggcactctttaaggattttaaatagtaaatttttatggaaaattatgcattcaatgcatcggaatttaaagtgttaaa 21813223  T
Q  146 cttttttaaggaataatttcttaattgggaaac 178  Q
    |||||| || ||||||||||||||||| |||||    
T  21813224 ctttttcaatgaataatttcttaattgagaaac 21813256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 34285487 - 34285330
Alignment:
Q  43 gggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtt 142  Q
    ||||||||||||| ||||||||||||| ||| ||||| || |||||||||||||||||||| |||| ||||||||| |||     | || ||||| ||||    
T  34285487 gggaaatgttaacgagtgctctaagggtactctttaataactttaaatagtaaatttttataaaaatttgtgcatttaat-----ggaagttgaagtgtt 34285393  T
Q  143 aaacttttttaaggaata-atttcttaattgggaaactttaaagagtg-ccttaggacactcg 203  Q
    |||||||||||| ||||| |||| ||||||||||| | |||||||||| ||| ||||||||||    
T  34285392 aaacttttttaaagaatatattttttaattgggaagccttaaagagtgccctaaggacactcg 34285330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 217
Target Start/End: Original strand, 7278144 - 7278305
Alignment:
Q  57 agtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaagg 156  Q
    ||||| |||||||||||  ||||||| |||||||||||| |||||||  ||| ||||||||| ||||||| | |||| ||||| |||| ||||| ||| |    
T  7278144 agtgccctaagggcactccttaagaactttaaatagtaagtttttatcgaaacttgtgcattgaatgcattggaaatcgaaatattaagcttttctaatg 7278243  T
Q  157 aataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaagagcctt 217  Q
    |||| |||| |||||| | | | |||||||||| ||||||| ||||||||| ||||| ||||    
T  7278244 aatagtttcgtaattgagtatccttaaagagtgcccttagggcactcgttagcaagaccctt 7278305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 32606388 - 32606493
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||  ||||| ||   ||||||| |||||||  |||| |||     
T  32606388 tttaaataataaatttttatgaaaaattatgcattcaatgcatcggaaattgaaatgttaacttttttcaaaatataattttttaattgaaaaaccttat 32606487  T
Q  184 agagtg 189  Q
    ||||||    
T  32606488 agagtg 32606493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 31294447 - 31294370
Alignment:
Q  107 aaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaa 184  Q
    |||| ||||||||||||||||| ||||| || ||||||||||||| || |||||||||||||||| | |||| |||||    
T  31294447 aaatggtgcattcaatgcatcggaaattaaagtgttaaactttttcaaagaataatttcttaattagaaaaccttaaa 31294370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 39145067 - 39144981
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    |||||||| |||||||| ||  |||||| |||||||||||||||| |||||||| ||||||| ||||||||  || ||||||||||||    
T  39145067 tttaaataataaatttt-atagaaaattatgcattcaatgcatcggaaattgaagtgttaaaattttttaaaaaacaatttcttaatt 39144981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 48811365 - 48811461
Alignment:
Q  75 tttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||| || ||| |||||||| |||||||||||||||||| | ||||||||| |||| ||| ||  ||| |||||||||| ||||| ||||| ||||    
T  48811365 tttaaaaacttttaatagtaagtttttatgaaaaattgtgtaatcaatgcattgaaatttgtaacattagacttttttaatgaatattttctaaatt 48811461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 29484855 - 29484929
Alignment:
Q  97 tttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    |||||||  ||||||||| |||||||  || |||||||||| ||||| | |||||||| ||||||||||||||||    
T  29484855 tttttatagaaaattgtgtattcaatttattgaaaattgaagtgttagatttttttaaagaataatttcttaatt 29484929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 46895923 - 46895989
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttt 151  Q
    ||||||||||| ||||||| |||| || ||||||||||||||| ||||||||| | || ||||||||    
T  46895923 ttaaatagtaagtttttataaaaatttatgcattcaatgcatcaaaaattgaagtctttaacttttt 46895989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 32734719 - 32734654
Alignment:
Q  146 cttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaa 210  Q
    ||||||||| |||||||||||| ||| |||| | |||||||||| ||||||| |||||||||||||    
T  32734719 cttttttaaagaataatttctttattaggaatccttaaagagtgcccttagggcactcgttaacaa 32734654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 36494271 - 36494174
Alignment:
Q  89 atagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaactttttt-aaggaataatttcttaattgggaaactttaaag 185  Q
    ||||||| |||||||| ||| ||||||||||||| ||| | |||||||| | ||| | |||||| || ||||| ||||||||||||||| | ||||||    
T  36494271 atagtaagtttttatggaaacttgtgcattcaatacattggaaattgaagtattagatttttttcaatgaatagtttcttaattgggaatccttaaag 36494174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 48551137 - 48551053
Alignment:
Q  87 aaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||||||| ||||||| |||||||||| | ||  ||||| |||||||||||  ||  || ||||||| ||||||||||||||||    
T  48551137 aaatagtaactttttataaaaaattgtgtaatcggtgcattgaaaattgaaaactttgacatttttaaagaataatttcttaatt 48551053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 51039847 - 51039768
Alignment:
Q  92 gtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||||||||||||||| || || ||||||| ||| |||||||||| | ||  |||||||||  ||||||||| ||||||    
T  51039847 gtaaatttttatgaaaatttatgtattcaattcattgaaaattgaactatttgacttttttatagaataattttttaatt 51039768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 9596264 - 9596306
Alignment:
Q  40 atagggaaatgttaacaagtgctctaagggcactttttaagaa 82  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||    
T  9596264 atagggaaatgctaacaagtgctcttagggcacttgttaagaa 9596306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 19898098 - 19898163
Alignment:
Q  74 ttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaat 139  Q
    ||||||||  |||| || |||||||||||||||||  |||| | ||||||||| ||||||||||||    
T  19898098 ttttaagacctttacattgtaaatttttatgaaaatatgtgtaatcaatgcattgaaaattgaaat 19898163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 25299057 - 25299126
Alignment:
Q  98 ttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttctt 167  Q
    ||||||||||  ||||||||| | ||||| |||||||||||| || |  |||||||| ||||||||||||    
T  25299057 ttttatgaaagtttgtgcatttattgcattgaaaattgaaatctttactttttttaaagaataatttctt 25299126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 29212818 - 29212713
Alignment:
Q  66 agggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttc 165  Q
    |||||||| |||||  | |||| ||| |||||||||||  ||| ||||||||||||| ||||  ||||||||   ||| ||||||| || ||||| ||||    
T  29212818 agggcactctttaaagactttagatattaaatttttatagaaacttgtgcattcaatacatcataaattgaagcattagactttttcaatgaatagtttc 29212719  T
Q  166 ttaatt 171  Q
    ||||||    
T  29212718 ttaatt 29212713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 43804065 - 43803992
Alignment:
Q  88 aatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataa 161  Q
    |||||||| |||||||||||| ||||| ||| ||| ||| | |||||||| ||||  |||||||||| ||||||    
T  43804065 aatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataa 43803992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 46547791 - 46547856
Alignment:
Q  89 atagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaa 154  Q
    ||||||| ||||||||||||||| || ||||||||||| | |||||||| | ||  ||||||||||    
T  46547791 atagtaattttttatgaaaaattatgtattcaatgcattggaaattgaattatttgacttttttaa 46547856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 47930195 - 47930114
Alignment:
Q  70 cactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttt 151  Q
    |||||||||||  |||| | | ||||||||||||||||| ||||| ||| |||| || ||||||| |||| || ||||||||    
T  47930195 cactttttaagggatttgattggtaaatttttatgaaaatttgtgtatttaatgtattgaaaattaaaatatttaacttttt 47930114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 52299081 - 52299036
Alignment:
Q  145 acttttttaaggaataatttcttaattgggaaactttaaagagtgc 190  Q
    ||||||||||||||||||||||| ||| |||| | |||||||||||    
T  52299081 acttttttaaggaataatttctttattaggaatccttaaagagtgc 52299036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 6771980 - 6771802
Alignment:
Q  41 tagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatg 140  Q
    ||||||||||||| | ||| | |||||| |||| |||||| | ||||||||||||||||||||| |||||||||||||||||  |||| |||||||||||    
T  6771980 tagggaaatgttagcgagtaccctaaggacactctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatatatcggaaattgaaatg 6771881  T
Q  141 ttaaacttttttaaggaataatttcttaattgggaaactttaaagagtgcctt-aggacactcgttaacaagagccttt 218  Q
     | |  ||||| || ||||||||||||||||| ||||| |||||||||| ||| |||||||||||||| |||| |||||    
T  6771880 gtgagttttttcaaagaataatttcttaattgagaaaccttaaagagtgtcttaaggacactcgttaagaagacccttt 6771802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 217
Target Start/End: Original strand, 44319823 - 44319995
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 145  Q
    |||||||||| |||  ||| || ||| | |||||| | |||||||| ||||||||||||  |||||||||||| ||||||||||||||| || |||||||    
T  44319823 aaatgttaacgagtattcttagagcattatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgttaaa 44319922  T
Q  146 cttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaagagcctt 217  Q
    |||||| ||  ||||||||||||||||  | || |||||||||| ||||||||||||||||||||||| ||||    
T  44319923 ctttttaaaaaaataatttcttaattgaaataccttaaagagtgtccttaggacactcgttaacaagaccctt 44319995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 218
Target Start/End: Complemental strand, 6775331 - 6775196
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||||||||||||| |||||| ||||||||||||||||||||||| ||||| ||||  | |  ||||| || ||||||||| ||||||| ||||| ||||    
T  6775331 tttaaatagtaaatatttatggaaaattgtgcattcaatgcatcggaaattcaaatagtgagatttttcaaagaataatttattaattgagaaaccttaa 6775232  T
Q  184 agagtg-ccttaggacactcgttaacaagagccttt 218  Q
    |||||| ||| ||||||||| ||||||||| |||||    
T  6775231 agagtgccctaaggacactccttaacaagacccttt 6775196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 5495959 - 5496080
Alignment:
Q  64 taagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatt 163  Q
    |||| ||||| |||||| | ||| ||||||||   |||||| ||| ||||||||||||||||||||||||| || |||||||| |||| |||||||||||    
T  5495959 taagagcactctttaaggactttgaatagtaa---tttatggaaagttgtgcattcaatgcatcgaaaattaaagtgttaaacattttcaaggaataatt 5496055  T
Q  164 tcttaattgggaaactttaaagagt 188  Q
    ||||||||| ||||| |||||||||    
T  5496056 tcttaattgagaaaccttaaagagt 5496080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 26310 - 26213
Alignment:
Q  75 tttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattg 172  Q
    |||||||| |||||||| ||||||||||||  ||||||| |||| ||||||||||||||| || ||||||||||||  || |||||||||||||||||    
T  26310 tttaagaactttaaataataaatttttatgggaaattgtacatttaatgcatcgaaaattaaagtgttaaacttttgcaaagaataatttcttaattg 26213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 31902740 - 31902839
Alignment:
Q  69 gcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttctta 168  Q
    ||||| |||||| | ||||||||||||||||||||| ||||||||| | |||||| || |||||||||||| ||  ||||| ||||||||||||||||||    
T  31902740 gcactctttaaggactttaaatagtaaatttttatggaaaattgtgtagtcaatgtattgaaaattgaaatatttgactttcttaaggaataatttctta 31902839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 20397437 - 20397542
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 145  Q
    |||| |||||||||| ||| ||| |||| |||||| | || |||||||||  |||||||||||  |||||||||||||||| ||||||||||||||| ||    
T  20397437 aaatattaacaagtgttcttaggacactctttaaggatttaaaatagtaatattttatgaaaatgtgtgcattcaatgcattgaaaattgaaatgtttaa 20397536  T
Q  146 cttttt 151  Q
    ||||||    
T  20397537 cttttt 20397542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 18926425 - 18926301
Alignment:
Q  86 taaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaag 185  Q
    ||||| |||| |||||||||||| ||||| ||||||||||| |||||||||| | ||  || ||||||| |||||||||| | |||   ||   ||||||    
T  18926425 taaatggtaactttttatgaaaagttgtgtattcaatgcattgaaaattgaactatttcacctttttaaagaataatttcatgatttaaaatgcttaaag 18926326  T
Q  186 agtgccttaggacactcgttaacaa 210  Q
    |||||| ||||||||||||||||||    
T  18926325 agtgccctaggacactcgttaacaa 18926301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 33899742 - 33899871
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||||||| ||| ||||| | |||| || || | ||||| ||| |||||||||||| |   | ||||||||||||||||||||| ||| |||| ||||||    
T  33899742 tttaaatattaagtttttgttaaaatttatgaaatcaatacattgaaaattgaaatttgtgatttttttaaggaataatttctttattaggaatctttaa 33899841  T
Q  184 agagtg-ccttaggacactcgttaacaaga 212  Q
    |||||| |||||  ||||||||||||||||    
T  33899842 agagtgcccttactacactcgttaacaaga 33899871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 191
Target Start/End: Original strand, 26402788 - 26402895
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||||||||||| ||||| | |||| || || | |||||| || |||||||||| | ||  ||||||||||||||||||||||| ||| |||| | ||||    
T  26402788 tttaaatagtaagtttttgtcaaaatttatgaaatcaatgtattgaaaattgaagtttttgacttttttaaggaataatttctttattaggaatccttaa 26402887  T
Q  184 agagtgcc 191  Q
    ||||||||    
T  26402888 agagtgcc 26402895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 3298332 - 3298230
Alignment:
Q  70 cactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaa 169  Q
    |||| |||||||| |||| ||  |||||||||||| ||| ||  ||||||||||||||  |||||||||| | || |||||| || ||||| ||||||||    
T  3298332 cactctttaagaactttagatgttaaatttttatggaaacttaagcattcaatgcatcagaaattgaaatatgaagctttttcaatgaatagtttcttaa 3298233  T
Q  170 ttg 172  Q
    |||    
T  3298232 ttg 3298230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 26239503 - 26239589
Alignment:
Q  41 tagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaattttt-atgaaaaattgtgcattcaatgcat 126  Q
    ||||||||||||||||||||||   |||| ||| |||||  | |||||||||||| ||||| ||||||||||||  |||||||||||    
T  26239503 tagggaaatgttaacaagtgcttctagggtactctttaaacactttaaatagtaagtttttaatgaaaaattgtatattcaatgcat 26239589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 5248601 - 5248746
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 145  Q
    |||| ||||||||||| || |||||| | ||||  || |||||||||||| ||||| | |||  || || | ||||||||| | |||||| | | || ||    
T  5248601 aaatattaacaagtgcccttagggcattgtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattggagtttttaa 5248700  T
Q  146 cttttttaaggaataatttcttaattgggaaactttaaagagtgcc 191  Q
    | ||||||| |||||||||||| ||| |||| | ||||||||||||    
T  5248701 catttttaaagaataatttctttattaggaatccttaaagagtgcc 5248746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 26803984 - 26804105
Alignment:
Q  43 gggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtt 142  Q
    ||||||||||||||||||| || |||||| | ||||| || |||||||||||| ||||| | |||  || |  | ||||||||| | |||||||| | ||    
T  26803984 gggaaatgttaacaagtgcccttagggcattgtttaataactttaaatagtaagtttttgtcaaagtttataaaatcaatgcattggaaattgaagtttt 26804083  T
Q  143 aaacttttttaaggaataattt 164  Q
      |||||||||| |||||||||    
T  26804084 tgacttttttaaagaataattt 26804105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 10031886 - 10031994
Alignment:
Q  43 gggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgtt 142  Q
    |||||||||||||||||| | || ||||||| |||||| | | |||||||||  | ||||||||||| |||| | ||||||||| | |||| ||||  ||    
T  10031886 gggaaatgttaacaagtgttttaggggcactctttaaggactataaatagtatgtatttatgaaaaagtgtgtaatcaatgcattggaaatcgaaacatt 10031985  T
Q  143 aaacttttt 151  Q
     ||||||||    
T  10031986 taacttttt 10031994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 13040300 - 13040332
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgca 116  Q
    |||||||||||||||||||||||||||||||||    
T  13040300 tttaaatagtaaatttttatgaaaaattgtgca 13040332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 27076088 - 27076266
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaa-atttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaa 144  Q
    |||||||||||||||  |||||   ||| |||||||  || ||||||||| | |||||| ||||  ||||||||||||| || ||||||||||||||| |    
T  27076088 aaatgttaacaagtgtcctaagattactctttaagagtttaaaatagtaagaattttataaaaatgtgtgcattcaatgaattgaaaattgaaatgttta 27076187  T
Q  145 acttttttaa----------ggaataatttcttaattgggaaactttaaagagtgc-cttaggacactcgttaacaaga 212  Q
     |||||| ||          ||||||||||||| |||  ||| | ||||||||||| || |||||||||||||||||||    
T  27076188 gctttttaaataaatgcatcggaataatttctttatttagaatccttaaagagtgctctaaggacactcgttaacaaga 27076266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 27202213 - 27202035
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaa-atttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaa 144  Q
    |||||||||||||||  |||||   ||| |||||||  || ||||||||| | |||||| ||||  ||||||||||||| || ||||||||||||||| |    
T  27202213 aaatgttaacaagtgtcctaagattactctttaagagtttaaaatagtaagaattttataaaaatgtgtgcattcaatgaattgaaaattgaaatgttta 27202114  T
Q  145 acttttttaa----------ggaataatttcttaattgggaaactttaaagagtgc-cttaggacactcgttaacaaga 212  Q
     |||||| ||          ||||||||||||| |||  ||| | ||||||||||| || |||||||||||||||||||    
T  27202113 gctttttaaataaatgcatcggaataatttctttatttagaatccttaaagagtgctctaaggacactcgttaacaaga 27202035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 46726232 - 46726109
Alignment:
Q  88 aatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagag 187  Q
    |||||||||||||||||||||| | || | ||||||||| |||| ||| ||  ||  |||||||||| ||||| ||| | |||| || | | ||||||||    
T  46726232 aatagtaaatttttatgaaaaactatgtaatcaatgcattgaaatttgtaacatttgacttttttaaagaatattttttaaatttggtatccttaaagag 46726133  T
Q  188 tgccttaggacactcgttaacaag 211  Q
    ||||   || ||||||||||||||    
T  46726132 tgcccgggggcactcgttaacaag 46726109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 47754471 - 47754534
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatga 105  Q
    |||||||||||||| ||||| |   ||||||| |||||||  ||||||||||||||||||||||    
T  47754471 agggaaatgttaacgagtgcccctggggcactctttaagacctttaaatagtaaatttttatga 47754534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 19620091 - 19620005
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaatt 171  Q
    ||||||||||| |||||||||||| ||||  | ||| ||||| | |||||||||  ||  || ||||||| ||||||||||||||||    
T  19620091 ttaaatagtaactttttatgaaaagttgtataatcagtgcattggaaattgaaaactttgacatttttaaagaataatttcttaatt 19620005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 24557871 - 24557746
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 145  Q
    |||||||||||| || |||||| | ||| |||||  | |||| | ||||| ||||| || ||| |||||||| ||||| || |||||||||| | ||| |    
T  24557871 aaatgttaacaaatgttctaagagtactctttaaagattttagaaagtaagtttttgtgtaaa-ttgtgcatacaatgtattgaaaattgaagtattaga 24557773  T
Q  146 cttttttaaggaataatttcttaattg 172  Q
    |||||||||  |||||||| |||||||    
T  24557772 cttttttaataaataattttttaattg 24557746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 40722469 - 40722375
Alignment:
Q  74 ttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttctta 168  Q
    ||||||||  |||||||||||| ||||||||  || ||||| | | ||||||| |||||||||||| ||  ||||| |||| |||||| ||||||    
T  40722469 ttttaagagttttaaatagtaagtttttatggtaatttgtgtaattaatgcattgaaaattgaaatatttgactttcttaaagaataaattctta 40722375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 41898396 - 41898266
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgt 141  Q
    ||||||||| || | |||||||| ||| || || |||| || | || ||| |||||| ||||| ||| |||| |||| ||||||||| |||||||| | |    
T  41898396 agggaaatgctagcgagtgctcttaggacatttgttaataactgtagataataaattgttatggaaacttgtacatttaatgcatcggaaattgaattat 41898297  T
Q  142 taaacttttttaaggaataatttcttaattg 172  Q
    | |||||||| || ||| | |||||||||||    
T  41898296 tgaactttttcaatgaaaagtttcttaattg 41898266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 114
Target Start/End: Original strand, 14651345 - 14651426
Alignment:
Q  34 tttaatatagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaattttt-atgaaaaattgtg 114  Q
    |||||||||||||||||||||| ||||| ||  ||||||| |||||| | || ||||||||  ||||| ||||||| |||||    
T  14651345 tttaatatagggaaatgttaacgagtgccctcggggcactctttaagcacttaaaatagtaggtttttaatgaaaagttgtg 14651426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 28663127 - 28663196
Alignment:
Q  67 gggcactttttaagaaatttaaatagtaaattttta-tgaaaaattgtgcattcaatgcatcgaaaattg 135  Q
    ||||||| |||||| | ||||||||||||  ||||| |||||||||||| ||| ||||||| ||||||||    
T  28663127 gggcactctttaagcactttaaatagtaaggttttaatgaaaaattgtgtattgaatgcattgaaaattg 28663196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 43210966 - 43211093
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||| |||||||||||| | ||||| ||||||||| ||||||| | || || || | |||||||||||  |  |||| ||| |||||||  |||  ||||    
T  43210966 tttagatagtaaatttt-acgaaaacttgtgcatttaatgcattggaa-ttaaagtattaaactttttagataaatagttttttaattgaaaaatcttaa 43211063  T
Q  184 agagtgcc-ttaggacactcgttaacaaga 212  Q
    |||||||| |||||||||||||||||||||    
T  43211064 agagtgcccttaggacactcgttaacaaga 43211093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 43234933 - 43234873
Alignment:
Q  41 tagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaattttta 102  Q
    ||||||||||||||| ||||| ||  ||||||| |||||| | |||||||||||||||||||    
T  43234933 tagggaaatgttaacgagtgccctc-gggcactctttaagcactttaaatagtaaattttta 43234873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 5013 - 5145
Alignment:
Q  87 aaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaaga 186  Q
    |||||||||||||||||| |||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |    
T  5013 aaatagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaattgggaaaccttaaaaa 5112  T
Q  187 gtg-ccttaggacactcgttaacaagagccttt 218  Q
    |||  |||| | |||| |||||||||| |||||    
T  5113 gtgttcttaaggcacttgttaacaagacccttt 5145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 122429 - 122578
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgt 141  Q
    |||||||||||||| |||||  | |||||| | |||||| | ||||| |||||| |||||||| ||||||||||||| ||||||||| ||||| || |||    
T  122429 agggaaatgttaacgagtgcctttagggcattctttaaggattttaagtagtaattttttatggaaaattgtgcatttaatgcatcggaaattaaagtgt 122528  T
Q  142 taaacttttttaaggaataatttcttaattgggaaactttaaagagtgcc 191  Q
    |||||||||| || ||||||||||||||||| ||||  ||||||||||||    
T  122529 taaactttttcaaagaataatttcttaattgagaaatcttaaagagtgcc 122578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 188
Target Start/End: Original strand, 29988321 - 29988437
Alignment:
Q  70 cactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaa 169  Q
    |||| |||||| | ||||||||||||||||||||| |||||||  |||||||| |||| ||||||||||  ||| |||||||||| ||||||||||||||    
T  29988321 cactctttaaggactttaaatagtaaatttttatggaaaattgaacattcaatacatcaaaaattgaaa--ttatacttttttaaagaataatttcttaa 29988418  T
Q  170 ttgggaaactttaaagagt 188  Q
    ||| ||||| |||||||||    
T  29988419 ttgagaaaccttaaagagt 29988437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 34530341 - 34530440
Alignment:
Q  37 aatatagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattga 136  Q
    ||||||||||||||||||| ||||| ||||| ||| | |||||| | |||||||||||  |||||||| |||||||| |||||||| ||| |||||||||    
T  34530341 aatatagggaaatgttaacgagtgccctaagagcattctttaagcactttaaatagtatgtttttatggaaaattgtacattcaatacattgaaaattga 34530440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 1479081 - 1479149
Alignment:
Q  67 gggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattg 135  Q
    ||||||| |||||| | ||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||    
T  1479081 gggcactctttaagcactttaaatggtaaatttttatgtaaaattgtgtattcaatgcattgaaaattg 1479149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 5678477 - 5678562
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaa 169  Q
    |||| |||||||||||||||  ||| || |  |||||||| || |||||||||| | |||||||||||||| ||||||||||||||    
T  5678477 tttagatagtaaatttttatagaaatttatatattcaatgtattgaaaattgaagtattaaacttttttaatgaataatttcttaa 5678562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 206
Target Start/End: Original strand, 10570954 - 10571071
Alignment:
Q  90 tagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtg 189  Q
    ||||||||||||||  ||| |||| ||||||||||||| ||||||||| | || ||| |||| || ||||| ||||||||||  ||| | ||||||||||    
T  10570954 tagtaaatttttatagaaatttgttcattcaatgcatcaaaaattgaagtattgaacattttcaatgaatagtttcttaattaagaatccttaaagagtg 10571053  T
Q  190 -ccttaggacactcgtta 206  Q
     ||||| || ||||||||    
T  10571054 tccttatgaaactcgtta 10571071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 10245808 - 10245857
Alignment:
Q  73 tttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaat 122  Q
    |||||||||| |||| |||||||||||||||| |||||||| ||||||||    
T  10245808 tttttaagaattttagatagtaaatttttatggaaaattgtacattcaat 10245857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 25028688 - 25028809
Alignment:
Q  68 ggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttctt 167  Q
    |||||| |||||||   ||||||  ||| ||||||| ||||  |||| ||||||||||| |||||||||| ||||  |||||||||| |||||||||  |    
T  25028688 ggcactctttaagagtcttaaattttaactttttataaaaacgtgtgtattcaatgcattgaaaattgaactgtttgacttttttaaagaataattttct 25028787  T
Q  168 aattgggaaactttaaagagtg 189  Q
    ||||  |||  |||||||||||    
T  25028788 aattttgaatgtttaaagagtg 25028809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 212
Target Start/End: Complemental strand, 29408103 - 29407974
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaa 183  Q
    |||||||||||| ||||| | |||| || || | |||||||||   |||||| | | ||  |||||||||| |||||||||||| ||| |||| | ||||    
T  29408103 tttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattagaaattggagtttttgacttttttaaagaataatttctttattaggaatccttaa 29408004  T
Q  184 agagtg-ccttaggacactcgttaacaaga 212  Q
    |||||| ||||| | |||||||||||||||    
T  29408003 agagtgcccttaaggcactcgttaacaaga 29407974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 2350388 - 2350320
Alignment:
Q  70 cactttttaagaaatttaaatagtaaattttt--atgaaaaattgtgcattcaatgcatcgaaaattga 136  Q
    |||| ||||| ||||||| |||||||||||||  || |||| |||| |||||||| |||||||||||||    
T  2350388 cactatttaaaaaatttatatagtaaatttttttataaaaacttgtacattcaatacatcgaaaattga 2350320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 13396960 - 13397045
Alignment:
Q  106 aaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaa-taatttcttaattgggaaactttaaagagtgc 190  Q
    |||||||||||||  ||||||   |||||||||| ||| ||||||||||  || | |||||||||||| ||| |||||||||||||    
T  13396960 aaaattgtgcatttgatgcattagaaattgaaatattacacttttttaataaagttatttcttaattgtgaatctttaaagagtgc 13397045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 27778869 - 27778805
Alignment:
Q  69 gcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaatt 134  Q
    ||||| |||||| | ||||||| |||||||||||||||||| |||| ||| ||||||| |||||||    
T  27778869 gcactctttaagcactttaaatggtaaatttttatgaaaaa-tgtgtattgaatgcattgaaaatt 27778805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 6586424 - 6586476
Alignment:
Q  85 ttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaa 137  Q
    ||||||||||| |||||||||||| || ||  |||||||||||| ||||||||    
T  6586424 ttaaatagtaactttttatgaaaatttatgttttcaatgcatcggaaattgaa 6586476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 8552946 - 8552894
Alignment:
Q  42 agggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagta 94  Q
    ||||||||| |||| ||||| ||||||||||||||||| ||  ||||||||||    
T  8552946 agggaaatgctaacgagtgccctaagggcactttttaacaaccttaaatagta 8552894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 22695487 - 22695543
Alignment:
Q  84 tttaaatagtaaatttttatgaaaaat-tgtgcattcaatgcatcgaaaattgaaat 139  Q
    ||||||| |||| ||||||| |||||| |||| | ||||||||||||||||||||||    
T  22695487 tttaaatggtaactttttattaaaaatatgtgtaatcaatgcatcgaaaattgaaat 22695543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 215
Target Start/End: Complemental strand, 13603 - 13433
Alignment:
Q  46 aaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 145  Q
    ||||| |||| |||||  |||||||||| |||||  | || | ||||||  |||||||| ||| |||||||||||| |||||| |||||||| | ||| |    
T  13603 aaatgctaacgagtgccttaagggcactctttaaagacttgagatagtaggtttttatggaaacttgtgcattcaaagcatcggaaattgaagtattaga 13504  T
Q  146 cttttttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaagagcc 215  Q
    |||||| || ||||| |||||||||| |||| |||||||||||| ||||||| ||||| ||| ||||||||    
T  13503 ctttttcaatgaatagtttcttaattaggaatctttaaagagtgcccttagggcactcattagcaagagcc 13433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 21335 - 21274
Alignment:
Q  150 tttaaggaataatttcttaattgggaaactttaaagagtg-ccttaggacactcgttaacaa 210  Q
    |||||||||||||||||||||||| |||| |||||||||| | |||||||||||||||||||    
T  21335 tttaaggaataatttcttaattggaaaaccttaaagagtgtcattaggacactcgttaacaa 21274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 134
Target Start/End: Complemental strand, 21365 - 21334
Alignment:
Q  103 tgaaaaattgtgcattcaatgcatcgaaaatt 134  Q
    ||||||||||||||||||||||||||||||||    
T  21365 tgaaaaattgtgcattcaatgcatcgaaaatt 21334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 20294 - 20184
Alignment:
Q  41 tagggaaatgttaacaagtgctctaagggcactttttaagaaatttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatg 140  Q
    |||| |||| ||||| ||||| || |||||||| |||| |   || |||||||||  |||||||||||  ||||||||||||||||   |||||||||||    
T  20294 taggaaaattttaacgagtgcccttagggcactctttatgggtttaaaatagtaatattttatgaaaatgtgtgcattcaatgcatttgaaattgaaatg 20195  T
Q  141 ttaaacttttt 151  Q
    || ||||||||    
T  20194 tttaacttttt 20184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 48845 - 48755
Alignment:
Q  118 tcaatgcatcgaaaattgaaatgttaaacttttttaaggaataatttcttaattgggaaactttaaagagtgc-cttaggacactcgttaa 207  Q
    ||||||||| |||||||||| | ||  | |||||||| |||||||||||| ||| | || | ||||||||||| |||||||||||||||||    
T  48845 tcaatgcattgaaaattgaagtttttgatttttttaaagaataatttctttattagaaatcattaaagagtgctcttaggacactcgttaa 48755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 6273 - 6318
Alignment:
Q  93 taaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaa 138  Q
    |||||||||||  ||| |||||||||||||||||| ||||||||||    
T  6273 taaatttttatataaatttgtgcattcaatgcatccaaaattgaaa 6318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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