View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14688_low_15 (Length: 233)
Name: NF14688_low_15
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14688_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 5329665 - 5329459
Alignment:
| Q |
8 |
aggagcagagaccaatactcaatcaatctcannnnnnncaattctatatgccaccacaaaattagtgttaattatcttgttttaatagatcaaattcatt |
107 |
Q |
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| T |
5329665 |
aggatcagaaaccaatactcaatcaatctcatttttt-caattctatatgcctccacaaaattagtgttaattatcttgtcttaatagatcaaattaatt |
5329567 |
T |
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| Q |
108 |
ccattaacatattatagtgcattttatgtattaatttattgaagatttataaaatgtaccactcttttgcaattataactaatataacataatttgatgg |
207 |
Q |
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| T |
5329566 |
ccattaacatattatagtgcattttatgtattaatttattgaagatttataaaatgtaccactcttttgcaattataactaatataacataatttgatgg |
5329467 |
T |
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| Q |
208 |
tctaaaag |
215 |
Q |
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|||||||| |
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| T |
5329466 |
tctaaaag |
5329459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 5335848 - 5335779
Alignment:
| Q |
144 |
tattgaagatttataaaatgtaccactcttttgcaattataactaatataacataatttgatggtctaaaa |
214 |
Q |
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| T |
5335848 |
tattgaagatttataaa-tataccactcttttccaattgtaaatagtgtaatataatttgatagtctaaaa |
5335779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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