View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14688_low_17 (Length: 223)

Name: NF14688_low_17
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14688_low_17
NF14688_low_17
[»] chr6 (8 HSPs)
chr6 (1-223)||(28016758-28016978)
chr6 (1-191)||(28073913-28074112)
chr6 (105-191)||(27916227-27916314)
chr6 (1-78)||(28034657-28034734)
chr6 (126-191)||(28034583-28034648)
chr6 (1-69)||(28046881-28046949)
chr6 (7-90)||(28001320-28001403)
chr6 (1-41)||(27916344-27916384)
[»] chr7 (1 HSPs)
chr7 (16-68)||(27933875-27933927)
[»] chr5 (2 HSPs)
chr5 (44-96)||(12240114-12240166)
chr5 (52-96)||(24154723-24154767)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28016978 - 28016758
Alignment:
Q  1 ttgacaaaaagataaaatgaaaatgattgcaatttgctctttctatagagcttaggaaaagatcaacaacctaactaaaatcctaactaactaactgaag 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||| |||  ||| |||||||||||||    
T  28016978 ttgacaaaaagataaaatgaaaataattgcaatttgctctttctatagagatgaggaaaagatcaacaacctaactataatgttaattaactaactgaag 28016879  T
Q  101 tttcactaatttctataatttctaataaaccatattgatgaaacatgtttctcagtttctttcaggctatgccagatgattattgctactttatcgaggc 200  Q
    | | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||| | |||||||||||||||||||| |||||||    
T  28016878 tctaactaatttctacaatttctaataaaccatattgatgaaacatgtttctcagtttctaccaggctaggtcagatgattattgctactttttcgaggc 28016779  T
Q  201 tataattatcattatagttgtac 223  Q
       | ||||||||||||||||||    
T  28016778 --aagttatcattatagttgtac 28016758  T

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Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 28074112 - 28073913
Alignment:
Q  1 ttgacaaaaagataaaatgaaaatgattgcaatttgctctttctatagagcttaggaaaagatcaacaacctaactaaaatcctaactaactaac----- 95  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||         
T  28074112 ttgataaaaagataaaatgaaaatgattgcaattttctctttctatagagcttaggaaaagacccacaaactaactaaaatcctaactaactaacaaact 28074013  T
Q  96 ----tgaagtttcactaatttctataatttctaataaaccatattgatgaaacatgtttctcagtttctttcaggctatgccagatgattattgctactt 191  Q
        |||||| | |||||||||| || |||||||||||||||||||||||||||||| | | |||||||  |||||||||||||||||||||||||||||    
T  28074012 gaagtgaagtctaactaatttctgtattttctaataaaccatattgatgaaacatgtattttagtttctagcaggctatgccagatgattattgctactt 28073913  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 27916314 - 27916227
Alignment:
Q  105 actaatttctataatttctaataaaccatattgatgaaacatgtttctcagtttct-ttcaggctatgccagatgattattgctactt 191  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||| || | || || |||||| |||||||||||||    
T  27916314 actaatttctataatttctaataaactatattgatggaacatgtttctccttttctattaatgccataccagattattattgctactt 27916227  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28034734 - 28034657
Alignment:
Q  1 ttgacaaaaagataaaatgaaaatgattgcaatttgctctttctatagagcttaggaaaagatcaacaacctaactaa 78  Q
    |||| ||||||||||| ||||||| ||| ||||||||||||| | ||||||||| | |||||||||||| ||||||||    
T  28034734 ttgataaaaagataaactgaaaattattacaatttgctctttatgtagagcttatggaaagatcaacaaactaactaa 28034657  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 28034648 - 28034583
Alignment:
Q  126 taaaccatattgatgaaacatgtttctcagtttctttcaggctatgccagatgattattgctactt 191  Q
    ||||||||||||||||||||||||||||||||||| | |||||||   ||||||| | ||||||||    
T  28034648 taaaccatattgatgaaacatgtttctcagtttctatgaggctatattagatgataactgctactt 28034583  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 28046949 - 28046881
Alignment:
Q  1 ttgacaaaaagataaaatgaaaatgattgcaatttgctctttctatagagcttaggaaaagatcaacaa 69  Q
    |||| ||||||||||||||||||| ||| || ||| ||||||  ||||||||||||| ||||| |||||    
T  28046949 ttgataaaaagataaaatgaaaattattacactttactctttaaatagagcttaggacaagattaacaa 28046881  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 28001403 - 28001320
Alignment:
Q  7 aaaagataaaatgaaaatgattgcaatttgctctttctatagagcttaggaaaagatcaacaacctaactaaaatcctaactaa 90  Q
    ||||||| |||| ||||| |||  |||||||||||| |||| ||||||| | ||||| ||||| |||| | |||||||||||||    
T  28001403 aaaagatgaaataaaaattattataatttgctctttgtatacagcttagcagaagattaacaatctaattgaaatcctaactaa 28001320  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27916384 - 27916344
Alignment:
Q  1 ttgacaaaaagataaaatgaaaatgattgcaatttgctctt 41  Q
    |||| ||||||||||||| ||||||||| ||||||||||||    
T  27916384 ttgataaaaagataaaattaaaatgattacaatttgctctt 27916344  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 27933927 - 27933875
Alignment:
Q  16 aatgaaaatgattgcaatttgctctttctatagagcttaggaaaagatcaaca 68  Q
    ||||||||||||| || ||| |||||| |||||||||||| ||||||||||||    
T  27933927 aatgaaaatgattacactttactctttatatagagcttagaaaaagatcaaca 27933875  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 12240114 - 12240166
Alignment:
Q  44 tatagagcttaggaaaagatcaacaacctaactaaaatcctaactaactaact 96  Q
    |||| ||||||| | || || ||||| ||||||||||||||||||||||||||    
T  12240114 tataaagcttagaagaaaattaacaaactaactaaaatcctaactaactaact 12240166  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 24154767 - 24154723
Alignment:
Q  52 ttaggaaaagatcaacaacctaactaaaatcctaactaactaact 96  Q
    |||||| ||||| ||||| |||||||||||| |||||||||||||    
T  24154767 ttaggagaagattaacaaactaactaaaatcttaactaactaact 24154723  T

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