View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14688_low_2 (Length: 544)

Name: NF14688_low_2
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14688_low_2
NF14688_low_2
[»] chr4 (11 HSPs)
chr4 (8-528)||(42762164-42762686)
chr4 (304-503)||(42743481-42743680)
chr4 (304-503)||(42752840-42753039)
chr4 (332-503)||(42734830-42735001)
chr4 (343-503)||(42716895-42717055)
chr4 (10-149)||(42743339-42743482)
chr4 (10-149)||(42752698-42752841)
chr4 (310-418)||(42769345-42769453)
chr4 (19-89)||(42735319-42735389)
chr4 (18-89)||(42769075-42769146)
chr4 (8-80)||(42716715-42716787)
[»] chr5 (2 HSPs)
chr5 (304-503)||(23040794-23040993)
chr5 (10-149)||(23040992-23041130)
[»] chr3 (1 HSPs)
chr3 (332-390)||(37108173-37108231)


Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 8 - 528
Target Start/End: Original strand, 42762164 - 42762686
Alignment:
Q  8 gacatcatcagcacttatcaatgggtacaacttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaatttcaaacaagtaattaa 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42762164 gacatcagcagcacttatcaatgggtacaacttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaatttcaaacaagtaattaa 42762263  T
Q  108 ccttactaaaaatattaaaataacaaaggaagttagagatatnnnnnnnttgttccccaaattttacatttctaatgattagcgacataatcaaaaatac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  42762264 ccttactaaaaatattaaaataacaaaggaagttagagatataaaaaaattgttccccaaattttacatttctaatgcttagcgatataatcaaaaatac 42762363  T
Q  208 aaattttgtcttttccatatctgaatttccttacttattttaactttttctatcatatat--gatgatcgttttcaaataaaatattaggtgtaagtaat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||    
T  42762364 aaattttgtcttttccatatctgaatttccttacttattttaactttttctatcatatatatgatgatcgttttcaaataaaatataaggtgtaagtaat 42762463  T
Q  306 aaacaatataccttgagtannnnnnngttaccaagaataacataacttgtgaaatctctatcaattgtgcttgcagcaactgtgagcgtccaaggttcca 405  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42762464 aaacaatataccttgagtatttttttgttaccaagaataacataacttgtgaaatctctatcaattgtgcttgcagcaactgtgagcgtccaaggttcca 42762563  T
Q  406 agttggatacagtgctaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatgaaaagatcctatggaaatactgtt 505  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42762564 agttggatacagtactaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatgaaaagatcctatggaaatactgtt 42762663  T
Q  506 ttgggtatattcttgggctaaac 528  Q
    ||||| |||||||||||||||||    
T  42762664 ttgggaatattcttgggctaaac 42762686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 304 - 503
Target Start/End: Original strand, 42743481 - 42743680
Alignment:
Q  304 ataaacaatataccttgagtannnnnnngttaccaagaataacataacttgtgaaatctctatcaattgtgcttgcagcaactgtgagcgtccaaggttc 403  Q
    |||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42743481 ataaacaatataccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttc 42743580  T
Q  404 caagttggatacagtgctaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatgaaaagatcctatggaaatactg 503  Q
    || ||| | ||||||| |||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  42743581 caggtttgctacagtgttaggagaaggtcctgaatttcctccagcagccacaacaatgatgttgttggcaactgcatggaaagaccctatggaaatactg 42743680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 304 - 503
Target Start/End: Original strand, 42752840 - 42753039
Alignment:
Q  304 ataaacaatataccttgagtannnnnnngttaccaagaataacataacttgtgaaatctctatcaattgtgcttgcagcaactgtgagcgtccaaggttc 403  Q
    |||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42752840 ataaacaatataccttgaatattttcttgttaccaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttc 42752939  T
Q  404 caagttggatacagtgctaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatgaaaagatcctatggaaatactg 503  Q
    || ||| | ||||||| |||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  42752940 caggtttgctacagtgttaggagaaggtcctgaatttcctccagcagccacaacaatgatgttgttggcaactgcatggaaagaccctatggaaatactg 42753039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 332 - 503
Target Start/End: Complemental strand, 42735001 - 42734830
Alignment:
Q  332 gttaccaagaataacataacttgtgaaatctctatcaattgtgcttgcagcaactgtgagcgtccaaggttccaagttggatacagtgctaggaacaggt 431  Q
    ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||  |||| ||||||| ||| | ||||||| ||| |  ||||    
T  42735001 gttaccaagtacaacataacttgtgaagtctctatcaattgtgcttgcagcaactgtgaggatccacggttccatgtttgctacagtgttagaagaaggt 42734902  T
Q  432 cctgaattacctccagaagccacaacaatgatgttgttggcaactgcatgaaaagatcctatggaaatactg 503  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  42734901 cctgaattacctccagaagccacaacaattatgttgttggcaactgcatggaaagaccctatggaaatactg 42734830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 343 - 503
Target Start/End: Original strand, 42716895 - 42717055
Alignment:
Q  343 taacataacttgtgaaatctctatcaattgtgcttgcagcaactgtgagcgtccaaggttccaagttggatacagtgctaggaacaggtcctgaattacc 442  Q
    ||||| |||| ||||| |||||||||||||| |||||||||||||| | |  ||| |||||||||||||||||||| |||||| ||||||||||||| ||    
T  42716895 taacaaaactagtgaactctctatcaattgtacttgcagcaactgtaaacacccatggttccaagttggatacagtactaggagcaggtcctgaatttcc 42716994  T
Q  443 tccagaagccacaacaatgatgttgttggcaactgcatgaaaagatcctatggaaatactg 503  Q
    ||||| |||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||    
T  42716995 tccagcagccacaacaattatgttattggcaactgcatggaaagaccctatggaaatactg 42717055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 42743339 - 42743482
Alignment:
Q  10 catcatcagcacttatcaatgggtacaacttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaatttcaaacaagtaattaacc 109  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||| | |||||||||||| ||||||| |    
T  42743339 catcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgctctgaaaggctctctccctaacaatgacaatttcaaacaattaattaaac 42743438  T
Q  110 ttacta----aaaatattaaaataacaaaggaagttagagatat 149  Q
    ||||||    |||  |||||||||||||||||| ||||||||||    
T  42743439 ttactaaattaaagaattaaaataacaaaggaaattagagatat 42743482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 42752698 - 42752841
Alignment:
Q  10 catcatcagcacttatcaatgggtacaacttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaatttcaaacaagtaattaacc 109  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||| | |||||||||||| ||||||| |    
T  42752698 catcagcagcactaatcaatgggtacaacttatgaggcggtaattcatgctctgaaaggctctctccctaacaatgacaatttcaaacaattaattaaac 42752797  T
Q  110 ttacta----aaaatattaaaataacaaaggaagttagagatat 149  Q
    ||||||    |||  |||||||||||||||||| ||||||||||    
T  42752798 ttactaaattaaagaattaaaataacaaaggaaattagagatat 42752841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 418
Target Start/End: Original strand, 42769345 - 42769453
Alignment:
Q  310 aatataccttgagtannnnnnngttaccaagaataacataacttgtgaaatctctatcaattgtgcttgcagcaactgtgagcgtccaaggttccaagtt 409  Q
    |||||||||||||||       |||||||||| |||||||||| ||||| ||||||||  |||| |||||||||||||||| || ||| |||||||||||    
T  42769345 aatataccttgagtattttcttgttaccaagagtaacataactagtgaattctctatccgttgtacttgcagcaactgtgatcgaccacggttccaagtt 42769444  T
Q  410 ggatacagt 418  Q
    |||| ||||    
T  42769445 ggatgcagt 42769453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 42735389 - 42735319
Alignment:
Q  19 cacttatcaatgggtacaacttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaa 89  Q
    |||||||||||||  ||||||||||||||||||| | |  |||||||||||||||||||||||| ||||||    
T  42735389 cacttatcaatggaaacaacttatgaggtggtaagtgagactctgaaaggctagctccctaacattaaaaa 42735319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 42769075 - 42769146
Alignment:
Q  18 gcacttatcaatgggtacaacttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaa 89  Q
    |||||||| |||||||| |||||||||||||| || |    ||||||||||||||||||||| |||| ||||    
T  42769075 gcacttattaatgggtagaacttatgaggtggcaagtgggactctgaaaggctagctccctatcaattaaaa 42769146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 42716715 - 42716787
Alignment:
Q  8 gacatcatcagcacttatcaatgggtacaacttatgaggtggtaattcaagctctgaaaggctagctccctaa 80  Q
    ||||||| || || |||||||||| |||||||||| |||  | ||||| | ||||||||||||||| ||||||    
T  42716715 gacatcagcaccagttatcaatggatacaacttattaggcagcaattccaactctgaaaggctagcaccctaa 42716787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 304 - 503
Target Start/End: Complemental strand, 23040993 - 23040794
Alignment:
Q  304 ataaacaatataccttgagtannnnnnngttaccaagaataacataacttgtgaaatctctatcaattgtgcttgcagcaactgtgagcgtccaaggttc 403  Q
    |||||||||||||||||||||       |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| || |||||||||||    
T  23040993 ataaacaatataccttgagtattttcttgttaccaagaataacatagcttgtgaaatctcgatcaattgtgcttgcagcaactgtaagtgtccaaggttc 23040894  T
Q  404 caagttggatacagtgctaggaacaggtcctgaattacctccagaagccacaacaatgatgttgttggcaactgcatgaaaagatcctatggaaatactg 503  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||  || |||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  23040893 caagttggatacagtactaggatcaggtcctgaatttcctccaccagacacaacaatgatgttgttggcaactgcatggaaagaccctatggaaatactg 23040794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 23041130 - 23040992
Alignment:
Q  10 catcatcagcacttatcaatgggtacaacttatgaggtggtaattcaagctctgaaaggctagctccctaacaataaaaatttcaaacaagtaattaacc 109  Q
    ||||| ||||||| |||||||| |||||||||||  | |||| |||| |||||||||||||   ||||||||||| | | |||||||||| ||||||| |    
T  23041130 catcagcagcactaatcaatggatacaacttatgccgcggtagttcatgctctgaaaggctctttccctaacaatgacagtttcaaacaattaattaaac 23041031  T
Q  110 ttactaaaaatattaaaataacaaaggaagttagagatat 149  Q
    |||||||| | |||||||||||||||||| ||||||||||    
T  23041030 ttactaaaga-attaaaataacaaaggaaattagagatat 23040992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 390
Target Start/End: Original strand, 37108173 - 37108231
Alignment:
Q  332 gttaccaagaataacataacttgtgaaatctctatcaattgtgcttgcagcaactgtga 390  Q
    ||||||||||| ||||||||| | ||| |||||||| |||||||| ||| |||||||||    
T  37108173 gttaccaagaacaacataactagggaactctctatccattgtgctggcaccaactgtga 37108231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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