View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14688_low_6 (Length: 322)

Name: NF14688_low_6
Description: NF14688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14688_low_6
NF14688_low_6
[»] chr3 (2 HSPs)
chr3 (1-308)||(44839580-44839887)
chr3 (1-308)||(44851337-44851644)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 44839887 - 44839580
Alignment:
Q  1 cggatgtgagtcaaaagagccatgagacacgaaagaaaagcaaatggttcagaaaattctttgagtatttggataacatgactattgaacagataaatga 100  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44839887 cggatgcgagtcaaaagagccatgagacacgaaagaagagcaaatggttcagaaaattctttgagtatttggataaaatgactattgaacagataaatga 44839788  T
Q  101 accggaaagagagtggcattgtccagcttgtcaaagtggtcctggttctattgattggtacagtggcctgctgcccctgatgaatcatgctaagacaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44839787 accggaaagagagtggcattgtccagcttgtcaaagtggtcctggttctattgattggtacagtggcctgctgcccctgatgaatcatgctaagacaaag 44839688  T
Q  201 ggttcaaagagggtgaaggttcacagggagcttgctgtacttcttgatgaggaattgcgtagaaggggtggtaccgtagttccagctggggaatcatttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44839687 ggttcaaagagggtgaaggttcacagggagcttgctgtacttcttgatgaggaattgcgtagaaggggtggtaccgtagttccagctggggaatcatttg 44839588  T
Q  301 gtaaatgg 308  Q
    ||||||||    
T  44839587 gtaaatgg 44839580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 44851644 - 44851337
Alignment:
Q  1 cggatgtgagtcaaaagagccatgagacacgaaagaaaagcaaatggttcagaaaattctttgagtatttggataacatgactattgaacagataaatga 100  Q
    |||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||| || ||||||||||| |||||||||| |||||||||||    
T  44851644 cggatgcgagtcaaaagagccatgagacacggaagaagagcaaatggttcaaaaagttctttcagaatttggataacctgactattgatcagataaatga 44851545  T
Q  101 accggaaagagagtggcattgtccagcttgtcaaagtggtcctggttctattgattggtacagtggcctgctgcccctgatgaatcatgctaagacaaag 200  Q
    ||| || ||| ||||||| ||||||||||||||| ||||||||||| |||||||||||||||| || |||| ||||||||||||||||||||||||||||    
T  44851544 accagagagacagtggcactgtccagcttgtcaaggtggtcctggtgctattgattggtacagaggtctgcagcccctgatgaatcatgctaagacaaag 44851445  T
Q  201 ggttcaaagagggtgaaggttcacagggagcttgctgtacttcttgatgaggaattgcgtagaaggggtggtaccgtagttccagctggggaatcatttg 300  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||| |||||||||||| ||||||    
T  44851444 ggttcaaaaagggtgaaggttcacagggagcttgctgtacttcttgatgaggaattgcgtagaaggggcactacagtagtcccagctggggaagcatttg 44851345  T
Q  301 gtaaatgg 308  Q
    ||||||||    
T  44851344 gtaaatgg 44851337  T

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